Wall clock time and date at job start Tue Mar 31 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99930 * 2 1 4 4 H 1.48500 * 109.47407 * 270.00480 * 3 2 1 5 5 H 1.48499 * 109.47054 * 30.00496 * 3 2 1 6 6 H 1.48507 * 109.47204 * 150.00242 * 3 2 1 7 7 C 1.37874 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99979 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00242 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47581 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47581 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99595 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00302 * 180.02562 * 11 10 9 14 14 C 1.45206 * 117.00077 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46777 * 179.97438 * 14 13 11 16 16 H 1.08993 * 110.31197 * 305.70043 * 15 14 13 17 17 C 1.54542 * 110.33800 * 183.52807 * 15 14 13 18 18 C 1.54702 * 104.05197 * 217.43396 * 17 15 14 19 19 C 1.53648 * 103.82035 * 0.58586 * 18 17 15 20 20 C 1.53464 * 110.67014 * 262.79706 * 19 18 17 21 21 C 1.55079 * 103.98851 * 215.69085 * 20 19 18 22 22 C 1.54959 * 102.85505 * 37.24482 * 21 20 19 23 23 C 1.53063 * 110.90678 * 143.63976 * 19 18 17 24 24 O 1.43557 * 105.98928 * 22.93374 * 19 18 17 25 25 H 0.97002 * 119.99990 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47017 * 59.99790 * 9 7 2 27 27 H 1.09000 * 109.47368 * 300.00765 * 9 7 2 28 28 H 1.09009 * 109.46302 * 60.00405 * 10 9 7 29 29 H 1.08995 * 109.47159 * 300.00733 * 10 9 7 30 30 H 1.09000 * 109.47070 * 300.00162 * 14 13 11 31 31 H 1.09001 * 109.46626 * 60.00180 * 14 13 11 32 32 H 1.09002 * 110.51199 * 336.06959 * 17 15 14 33 33 H 1.08993 * 110.51756 * 98.79230 * 17 15 14 34 34 H 1.08995 * 110.55385 * 119.17307 * 18 17 15 35 35 H 1.09004 * 110.55338 * 241.85927 * 18 17 15 36 36 H 1.09000 * 110.52601 * 334.31173 * 20 19 18 37 37 H 1.08994 * 110.52818 * 97.06536 * 20 19 18 38 38 H 1.09003 * 110.73526 * 278.89703 * 21 20 19 39 39 H 1.09005 * 110.89198 * 155.65980 * 21 20 19 40 40 H 1.09008 * 110.48188 * 203.82960 * 22 21 20 41 41 H 1.08993 * 110.59702 * 81.25201 * 22 21 20 42 42 H 1.08999 * 110.09186 * 240.05274 * 23 19 18 43 43 H 1.09002 * 110.09288 * 1.58876 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5284 -2.6366 -0.0009 12 8 6.1326 -1.5901 -0.0005 13 8 6.1996 -3.7990 -0.0014 14 6 7.6496 -3.7230 -0.0007 15 6 8.2344 -5.1369 -0.0006 16 1 7.8274 -5.7146 0.8292 17 6 9.7761 -5.0805 0.0892 18 6 10.2482 -6.2357 -0.8250 19 6 8.9401 -6.8352 -1.3639 20 6 8.5272 -8.0628 -0.5407 21 6 7.8980 -9.0205 -1.5856 22 6 8.7901 -8.8029 -2.8339 23 6 9.1054 -7.2907 -2.8159 24 8 7.9553 -5.7962 -1.2568 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6804 0.8889 27 1 3.8745 -0.6800 -0.8910 28 1 3.6578 -3.1505 -0.8909 29 1 3.6584 -3.1502 0.8891 30 1 7.9860 -3.1903 -0.8902 31 1 7.9851 -3.1914 0.8898 32 1 10.1456 -4.1245 -0.2818 33 1 10.1053 -5.2463 1.1149 34 1 10.8586 -5.8519 -1.6423 35 1 10.8029 -6.9769 -0.2496 36 1 9.3997 -8.5231 -0.0771 37 1 7.7926 -7.7864 0.2155 38 1 6.8660 -8.7391 -1.7949 39 1 7.9533 -10.0553 -1.2474 40 1 8.2476 -9.0686 -3.7414 41 1 9.7082 -9.3851 -2.7553 42 1 8.4068 -6.7547 -3.4583 43 1 10.1287 -7.1167 -3.1487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:12 Heat of formation + Delta-G solvation = -157.609005 kcal Electronic energy + Delta-G solvation = -22221.431274 eV Core-core repulsion = 18844.636874 eV Total energy + Delta-G solvation = -3376.794400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.75285 -39.88832 -36.80045 -35.86595 -33.59202 -32.53217 -31.47658 -30.67584 -29.12365 -27.20080 -26.03385 -23.50625 -21.76576 -21.70640 -20.64824 -20.00007 -19.71279 -17.53799 -17.01182 -16.61686 -16.32571 -16.03638 -15.66624 -15.36581 -14.61815 -14.20032 -14.06088 -13.80475 -13.66881 -13.23343 -12.84035 -12.60884 -12.44551 -12.14056 -11.96144 -11.90532 -11.53198 -11.46767 -11.38301 -11.35594 -11.00405 -10.96012 -10.85837 -10.71583 -10.43164 -10.28968 -10.12676 -9.89557 -9.83828 -9.66205 -9.23413 -8.53772 -6.05274 -4.04904 2.73717 2.98967 3.35885 3.42560 3.49975 3.51935 4.11595 4.18947 4.40943 4.48059 4.48310 4.63159 4.70048 4.86767 4.94019 5.04371 5.14047 5.20855 5.25575 5.29505 5.32280 5.38425 5.44427 5.50342 5.51528 5.59465 5.63462 5.67115 5.70735 5.78978 5.84217 5.96731 6.04133 6.07239 6.08008 6.52258 6.77135 6.83604 7.26798 7.33935 7.73171 8.25216 8.49582 8.97416 9.56615 11.07390 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030648 B = 0.002983 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.371565 B = 9383.224721 C = 9911.361151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.458 3.542 12 O -0.514 6.514 13 O -0.356 6.356 14 C 0.070 3.930 15 C 0.077 3.923 16 H 0.081 0.919 17 C -0.149 4.149 18 C -0.141 4.141 19 C 0.096 3.904 20 C -0.140 4.140 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.115 4.115 24 O -0.345 6.345 25 H 0.264 0.736 26 H 0.025 0.975 27 H 0.021 0.979 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.098 -18.089 -1.616 29.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.039 4.039 10 C -0.133 4.133 11 C 0.302 3.698 12 O -0.402 6.402 13 O -0.274 6.274 14 C -0.004 4.004 15 C 0.019 3.981 16 H 0.098 0.902 17 C -0.187 4.187 18 C -0.179 4.179 19 C 0.056 3.944 20 C -0.178 4.178 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.152 4.152 24 O -0.264 6.264 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 22.985 -17.604 -1.770 29.006 hybrid contribution 0.652 1.004 0.164 1.208 sum 23.638 -16.600 -1.606 28.929 Atomic orbital electron populations 1.69905 1.06270 1.27042 1.50733 1.24954 0.94727 0.99196 0.94262 0.86799 0.80566 0.83410 0.78786 1.20163 1.21340 1.18605 1.21040 0.88867 0.94804 1.51688 0.90635 1.19480 0.96885 0.89695 0.97889 1.21532 0.83446 1.03433 1.04872 1.24741 0.92777 0.80922 0.71332 1.90613 1.70729 1.33157 1.45700 1.86596 1.20336 1.35931 1.84492 1.23001 0.78622 0.95718 1.03046 1.23053 0.93823 0.92630 0.88589 0.90154 1.22946 0.94460 1.00115 1.01132 1.22997 0.97528 0.97724 0.99651 1.22403 0.87438 0.88541 0.96009 1.22813 1.01111 0.95581 0.98249 1.22511 0.99717 0.98930 0.94905 1.22395 0.99680 0.95455 0.98599 1.22134 1.02281 0.96198 0.94607 1.89204 1.52708 1.46648 1.37877 0.92620 0.95638 0.96058 0.88287 0.88340 0.90679 0.90116 0.90172 0.89939 0.90410 0.90193 0.90851 0.90683 0.90943 0.91551 0.91356 0.91618 0.90180 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.44 27.47 -169.99 -4.67 17.77 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 7 C -0.53 -15.09 9.66 -34.44 -0.33 -15.42 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.00 -0.05 3.33 -27.89 -0.09 -0.14 16 10 C -0.10 -1.94 5.75 -27.89 -0.16 -2.10 16 11 C 0.46 8.95 7.96 36.00 0.29 9.23 16 12 O -0.51 -11.31 15.73 -18.76 -0.30 -11.61 16 13 O -0.36 -6.04 10.22 -40.46 -0.41 -6.46 16 14 C 0.07 0.96 5.07 37.16 0.19 1.15 16 15 C 0.08 0.85 3.23 -25.92 -0.08 0.77 16 16 H 0.08 0.85 7.45 -51.93 -0.39 0.46 16 17 C -0.15 -1.19 6.65 -25.03 -0.17 -1.36 16 18 C -0.14 -1.04 6.13 -25.50 -0.16 -1.20 16 19 C 0.10 0.89 1.05 -90.01 -0.09 0.79 16 20 C -0.14 -1.15 5.91 -25.39 -0.15 -1.30 16 21 C -0.12 -0.97 6.92 -24.60 -0.17 -1.14 16 22 C -0.12 -0.88 6.85 -24.91 -0.17 -1.05 16 23 C -0.11 -0.96 6.29 -25.92 -0.16 -1.12 16 24 O -0.35 -4.40 10.69 -35.32 -0.38 -4.78 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 27 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 28 H 0.10 1.90 8.14 -51.92 -0.42 1.47 16 29 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 30 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 31 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 32 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.53 7.50 -51.93 -0.39 0.14 16 35 H 0.08 0.46 7.42 -51.93 -0.39 0.08 16 36 H 0.07 0.48 7.45 -51.93 -0.39 0.10 16 37 H 0.07 0.68 7.19 -51.93 -0.37 0.31 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.79 7.99 -51.93 -0.41 0.37 16 43 H 0.07 0.51 7.35 -51.93 -0.38 0.12 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -33.22 343.55 -8.45 -41.66 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -7.28 Total: -3.73 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -1.36 Total: -10.90 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.77 Total: -27.14 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.09 Total: -22.84 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.22 -8.45 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.945 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds