Wall clock time and date at job start Tue Mar 31 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99946 * 2 1 4 4 H 1.48497 * 109.47063 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46596 * 299.99772 * 3 2 1 6 6 H 1.48493 * 109.47095 * 59.99832 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99905 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47110 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.20823 * 120.00098 * 359.97438 * 11 10 9 13 13 O 1.34234 * 119.99549 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99753 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47251 * 179.97438 * 14 13 11 16 16 O 1.20758 * 119.99781 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00108 * 179.97438 * 15 14 13 18 18 C 1.50474 * 109.62566 * 90.96325 * 17 15 14 19 19 C 1.54071 * 112.50056 * 213.85445 * 18 17 15 20 20 C 1.54063 * 112.81676 * 318.28858 * 19 18 17 21 21 C 1.50476 * 112.49675 * 318.27911 * 20 19 18 22 22 C 1.54245 * 108.51279 * 94.15799 * 21 20 19 23 23 C 1.45537 * 112.40728 * 280.00235 * 22 21 20 24 24 H 0.97000 * 120.00003 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47733 * 59.99339 * 9 7 2 26 26 H 1.08999 * 109.46760 * 299.99098 * 9 7 2 27 27 H 1.08999 * 109.46986 * 59.99885 * 10 9 7 28 28 H 1.08995 * 109.46767 * 299.99907 * 10 9 7 29 29 H 1.09005 * 109.47761 * 59.99227 * 14 13 11 30 30 H 1.09002 * 109.46857 * 299.99884 * 14 13 11 31 31 H 1.08997 * 109.62579 * 330.38568 * 17 15 14 32 32 H 1.08996 * 108.87573 * 334.63884 * 18 17 15 33 33 H 1.08998 * 108.87259 * 93.18017 * 18 17 15 34 34 H 1.08994 * 108.81493 * 197.42170 * 19 18 17 35 35 H 1.09007 * 108.81008 * 79.14598 * 19 18 17 36 36 H 1.09002 * 108.87867 * 197.50178 * 20 19 18 37 37 H 1.09000 * 108.87817 * 79.05963 * 20 19 18 38 38 H 1.08996 * 109.62739 * 213.86202 * 21 20 19 39 39 H 1.08997 * 109.62762 * 334.25700 * 21 20 19 40 40 H 1.09006 * 108.89114 * 40.75619 * 22 21 20 41 41 H 1.09001 * 108.89095 * 159.24371 * 22 21 20 42 42 H 1.08998 * 108.89158 * 182.69134 * 23 22 21 43 43 H 1.08997 * 108.89737 * 301.27941 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2835 -4.9671 0.0020 13 8 2.1630 -6.1296 0.0018 14 6 1.3722 -7.3473 0.0018 15 6 2.2902 -8.5425 0.0019 16 8 3.4874 -8.3842 0.0015 17 6 1.7142 -9.9351 0.0025 18 6 1.5427 -10.4117 -1.4144 19 6 0.3112 -11.3216 -1.5854 20 6 0.1463 -12.3272 -0.4299 21 6 1.4551 -12.9367 -0.0059 22 6 2.0199 -12.1146 1.1706 23 6 2.6790 -10.8945 0.7290 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8894 29 1 0.7436 -7.3725 -0.8884 30 1 0.7430 -7.3719 0.8916 31 1 0.7497 -9.9321 0.5101 32 1 1.4346 -9.5455 -2.0671 33 1 2.4331 -10.9665 -1.7100 34 1 0.4088 -11.8732 -2.5203 35 1 -0.5816 -10.6984 -1.6391 36 1 -0.5267 -13.1232 -0.7485 37 1 -0.2967 -11.8140 0.4237 38 1 1.2935 -13.9668 0.3115 39 1 2.1559 -12.9163 -0.8405 40 1 1.2024 -11.8512 1.8417 41 1 2.7385 -12.7265 1.7159 42 1 3.0965 -10.3847 1.5972 43 1 3.4906 -11.1574 0.0505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:00 Heat of formation + Delta-G solvation = -158.650850 kcal Electronic energy + Delta-G solvation = -21849.253937 eV Core-core repulsion = 18472.414359 eV Total energy + Delta-G solvation = -3376.839578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67682 -39.77997 -38.16704 -36.05029 -33.59745 -32.93223 -32.78049 -31.22004 -29.25969 -26.18313 -25.31032 -25.00163 -22.35467 -21.22877 -20.40898 -19.89474 -19.22911 -17.47041 -16.66993 -16.52303 -16.43579 -15.83255 -15.49809 -15.08455 -14.63705 -14.50585 -14.46503 -14.15425 -13.85656 -13.44317 -13.24294 -12.56518 -12.44727 -12.40351 -12.25531 -12.18504 -11.71043 -11.22100 -11.16568 -11.03748 -10.98026 -10.88302 -10.77059 -10.63110 -10.57235 -10.53636 -10.06194 -10.03293 -9.76577 -9.46508 -9.16658 -8.38625 -6.02324 -4.06975 1.72418 2.75210 2.75820 3.30890 3.38205 3.42284 3.84792 4.16447 4.23379 4.44457 4.49860 4.63955 4.73958 4.79790 4.93782 4.96243 5.01325 5.07832 5.08984 5.16419 5.33315 5.40236 5.48472 5.51667 5.59594 5.63556 5.76419 5.77531 5.81244 5.84188 5.90413 5.99211 6.05146 6.11896 6.19382 6.56690 6.87119 7.29267 7.65793 7.71885 7.97062 8.21056 8.37360 9.00260 9.57221 11.08754 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.045870 B = 0.002535 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.267686 B =11040.543091 C =11347.369664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.457 3.543 12 O -0.505 6.505 13 O -0.349 6.349 14 C 0.011 3.989 15 C 0.360 3.640 16 O -0.425 6.425 17 C -0.126 4.126 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.103 4.103 24 H 0.261 0.739 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -27.076 -0.446 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.140 4.140 11 C 0.301 3.699 12 O -0.392 6.392 13 O -0.267 6.267 14 C -0.064 4.064 15 C 0.232 3.768 16 O -0.295 6.295 17 C -0.145 4.145 18 C -0.146 4.146 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.141 4.141 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.906 -26.896 -0.448 26.968 hybrid contribution 0.038 0.906 0.000 0.906 sum 1.944 -25.991 -0.447 26.067 Atomic orbital electron populations 1.70004 1.06095 1.26661 1.50086 1.25027 0.94868 0.99369 0.95116 0.86477 0.80057 0.83504 0.77612 1.19624 1.20963 1.20955 1.21197 0.93157 0.90591 1.51613 0.92203 1.19034 0.93215 0.89277 0.98904 1.21790 1.00708 0.87278 1.04232 1.24925 0.87989 0.85583 0.71449 1.90635 1.15791 1.87580 1.45162 1.86682 1.41005 1.14104 1.84921 1.23319 0.94815 0.83344 1.04902 1.24564 0.89765 0.90869 0.71597 1.90425 1.17533 1.88296 1.33284 1.21429 1.01531 0.92325 0.99201 1.21246 0.99651 0.99662 0.94035 1.21908 0.97613 0.97181 0.98643 1.21377 0.97617 0.98335 0.98603 1.21366 0.97321 0.98705 0.98325 1.20499 1.00682 0.96345 0.98053 1.20363 0.97724 0.95199 1.00773 0.92901 0.95563 0.95548 0.88789 0.88789 0.88146 0.88107 0.88014 0.91653 0.90984 0.91776 0.91754 0.92198 0.91887 0.91966 0.91487 0.91917 0.91842 0.91619 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 10 C -0.10 -2.14 5.75 -27.88 -0.16 -2.30 16 11 C 0.46 9.12 7.96 36.01 0.29 9.40 16 12 O -0.51 -11.28 15.73 -18.75 -0.29 -11.58 16 13 O -0.35 -6.10 9.76 -45.93 -0.45 -6.55 16 14 C 0.01 0.15 5.87 36.01 0.21 0.36 16 15 C 0.36 4.25 5.94 -29.03 -0.17 4.08 16 16 O -0.43 -6.52 16.46 -13.71 -0.23 -6.75 16 17 C -0.13 -1.03 2.13 -92.39 -0.20 -1.22 16 18 C -0.11 -0.79 4.88 -27.43 -0.13 -0.93 16 19 C -0.12 -0.69 5.86 -25.62 -0.15 -0.84 16 20 C -0.12 -0.68 5.31 -27.44 -0.15 -0.82 16 21 C -0.12 -0.67 5.60 -27.34 -0.15 -0.82 16 22 C -0.12 -0.73 5.26 -29.60 -0.16 -0.89 16 23 C -0.10 -0.81 4.19 -29.60 -0.12 -0.94 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 28 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 29 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.10 1.18 8.13 -51.93 -0.42 0.76 16 31 H 0.10 0.68 6.98 -51.93 -0.36 0.32 16 32 H 0.06 0.51 7.70 -51.93 -0.40 0.11 16 33 H 0.07 0.53 6.63 -51.93 -0.34 0.19 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.35 6.64 -51.93 -0.34 0.01 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.39 6.99 -51.93 -0.36 0.03 16 40 H 0.06 0.37 7.47 -51.93 -0.39 -0.02 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.58 7.89 -51.93 -0.41 0.17 16 43 H 0.07 0.59 7.47 -51.93 -0.39 0.20 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -33.34 346.94 -8.64 -41.97 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -7.19 Total: -4.79 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.42 Total: -7.76 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.97 Total: -24.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.34 -8.64 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.678 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds