Wall clock time and date at job start Tue Mar 31 2020 05:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46684 * 179.97438 * 4 3 2 6 6 N 1.29014 * 126.43954 * 269.68745 * 5 4 3 7 7 N 1.28737 * 108.81027 * 179.83675 * 6 5 4 8 8 N 1.28841 * 109.39593 * 0.44217 * 7 6 5 9 9 C 1.31070 * 107.99132 * 359.73295 * 8 7 6 10 10 C 1.50696 * 126.66193 * 179.97438 * 9 8 7 11 11 O 1.45201 * 109.47018 * 270.04098 * 10 9 8 12 12 C 1.34229 * 116.99990 * 180.02562 * 11 10 9 13 13 O 1.20827 * 120.00279 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99964 * 180.02562 * 12 11 10 15 15 C 1.53008 * 109.46861 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.46861 * 179.97438 * 15 14 12 17 17 H 1.08010 * 119.99686 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99940 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99527 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00073 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47294 * 89.99814 * 20 18 16 22 22 H 1.48505 * 109.46935 * 209.99914 * 20 18 16 23 23 H 1.48498 * 109.47086 * 329.99549 * 20 18 16 24 24 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 25 25 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 26 26 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 28 28 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 30 30 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 32 32 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 33 33 H 1.08999 * 109.47475 * 30.04141 * 10 9 8 34 34 H 1.09005 * 109.47216 * 150.04438 * 10 9 8 35 35 H 1.08998 * 109.47218 * 299.99764 * 14 12 11 36 36 H 1.08994 * 109.47338 * 59.99693 * 14 12 11 37 37 H 1.08993 * 109.46890 * 299.99300 * 15 14 12 38 38 H 1.08989 * 109.47113 * 60.00153 * 15 14 12 39 39 H 0.97006 * 119.99744 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0581 2.8239 0.0000 6 7 4.3193 3.5439 -1.0382 7 7 4.7227 4.7028 -0.6488 8 7 4.7355 4.7410 0.6389 9 6 4.3242 3.5782 1.0826 10 6 4.1782 3.1658 2.5246 11 8 5.4222 2.5778 2.9882 12 6 5.4590 2.1545 4.2615 13 8 4.4838 2.2711 4.9653 14 6 6.7165 1.5340 4.8132 15 6 6.4925 1.1411 6.2750 16 6 7.7499 0.5200 6.8266 17 1 8.6215 0.4154 6.1973 18 6 7.7876 0.0851 8.1344 19 7 8.8847 -0.4574 8.6155 20 14 6.2799 0.2653 9.2224 21 1 5.4354 -0.9504 9.1035 22 1 6.7062 0.4357 10.6347 23 1 5.4996 1.4539 8.7941 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 -0.8900 30 1 1.6764 1.9564 0.8900 31 1 3.9329 0.9289 0.8909 32 1 3.9336 0.9287 -0.8892 33 1 3.9418 4.0404 3.1306 34 1 3.3751 2.4341 2.6137 35 1 6.9682 0.6460 4.2333 36 1 7.5339 2.2523 4.7509 37 1 6.2406 2.0288 6.8552 38 1 5.6754 0.4226 6.3369 39 1 8.9112 -0.7637 9.5356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:34 Heat of formation + Delta-G solvation = 10.052978 kcal Electronic energy + Delta-G solvation = -21573.426794 eV Core-core repulsion = 18132.655171 eV Total energy + Delta-G solvation = -3440.771623 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.50790 -40.38835 -37.40155 -36.68844 -34.71901 -33.75884 -33.34180 -31.53905 -30.25092 -28.45464 -26.35918 -25.42750 -23.61124 -22.45547 -21.89034 -21.75369 -20.04757 -17.99981 -17.84292 -17.19611 -16.86556 -16.63850 -16.31618 -16.12078 -14.62849 -14.59600 -14.51307 -14.15138 -13.95900 -13.41496 -13.23560 -12.95528 -12.75521 -12.55599 -12.53417 -12.26297 -12.05165 -11.73233 -11.58366 -11.42887 -11.25492 -11.11643 -11.10163 -10.92153 -10.62885 -10.46000 -10.27111 -10.05756 -9.81388 -9.34620 -8.62801 -6.13870 -4.14685 0.74321 1.53592 1.84864 2.40966 2.77431 3.28180 3.36126 3.43679 3.60499 3.73821 3.99350 4.11741 4.34027 4.39405 4.50162 4.63574 4.71161 4.87458 4.93232 4.99695 5.09617 5.17203 5.19942 5.20560 5.27720 5.38922 5.53196 5.60168 5.73204 5.77319 5.84046 5.86694 6.21748 6.51723 7.11670 7.19895 7.61297 7.90896 8.28844 8.38591 8.87961 9.47194 10.98627 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.003470 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.047611 B = 8067.303142 C = 9027.401959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.138 4.138 4 C 0.106 3.894 5 N -0.292 5.292 6 N -0.087 5.087 7 N -0.075 5.075 8 N -0.279 5.279 9 C 0.184 3.816 10 C 0.147 3.853 11 O -0.359 6.359 12 C 0.463 3.537 13 O -0.503 6.503 14 C -0.094 4.094 15 C -0.002 4.002 16 C -0.530 4.530 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.261 1.261 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.027 0.973 38 H 0.022 0.978 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.543 1.349 -18.161 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.177 4.177 4 C -0.015 4.015 5 N -0.095 5.095 6 N -0.072 5.072 7 N -0.068 5.068 8 N -0.130 5.130 9 C -0.094 4.094 10 C 0.069 3.931 11 O -0.276 6.276 12 C 0.307 3.693 13 O -0.389 6.389 14 C -0.131 4.131 15 C -0.039 4.039 16 C -0.568 4.568 17 H 0.094 0.906 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.186 1.186 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.046 0.954 38 H 0.040 0.960 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.432 2.249 -18.798 24.425 hybrid contribution -1.044 -0.672 1.188 1.718 sum -16.476 1.577 -17.611 24.168 Atomic orbital electron populations 1.21752 0.94884 1.02276 1.02150 1.21451 0.96830 0.94514 1.03149 1.22071 0.91881 0.99553 1.04182 1.22501 0.96400 0.75358 1.07265 1.48639 1.42156 1.14684 1.04045 1.78880 1.15492 1.00225 1.12628 1.78673 1.14464 1.10163 1.03542 1.75062 1.16469 1.17881 1.03590 1.25476 1.01908 0.88750 0.93261 1.20936 0.86832 1.00824 0.84475 1.86644 1.36974 1.71912 1.32040 1.24921 0.91923 0.74525 0.77910 1.90654 1.37275 1.52476 1.58492 1.21623 0.90703 1.01061 0.99758 1.19502 0.98191 0.97425 0.88790 1.21002 0.97973 1.40227 0.97557 0.90619 1.24955 0.96001 0.94270 0.97831 1.69902 1.27161 1.40724 1.15883 0.86803 0.83489 0.79514 0.79782 1.20158 1.21245 1.18569 0.92419 0.92566 0.92096 0.91095 0.90944 0.90235 0.90655 0.86671 0.86401 0.86780 0.88469 0.88116 0.87891 0.95438 0.95981 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.33 16 2 C -0.12 -0.51 5.93 -26.73 -0.16 -0.66 16 3 C -0.14 -0.70 5.54 -26.73 -0.15 -0.85 16 4 C 0.11 0.64 6.06 -4.04 -0.02 0.61 16 5 N -0.29 -3.00 3.35 -58.27 -0.19 -3.20 16 6 N -0.09 -1.10 13.29 60.35 0.80 -0.29 16 7 N -0.07 -1.11 13.43 60.35 0.81 -0.30 16 8 N -0.28 -4.09 12.36 32.70 0.40 -3.68 16 9 C 0.18 2.20 7.77 -155.43 -1.21 0.99 16 10 C 0.15 1.62 5.60 36.00 0.20 1.82 16 11 O -0.36 -4.95 10.20 -39.26 -0.40 -5.35 16 12 C 0.46 7.55 7.96 36.01 0.29 7.84 16 13 O -0.50 -9.32 15.73 -18.75 -0.29 -9.61 16 14 C -0.09 -1.67 5.75 -27.88 -0.16 -1.83 16 15 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 16 C -0.53 -14.35 9.66 -34.44 -0.33 -14.69 16 17 H 0.08 2.16 7.99 -52.48 -0.42 1.74 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 20 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.12 0.59 7.75 -51.93 -0.40 0.18 16 32 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.11 1.23 8.13 -51.93 -0.42 0.81 16 34 H 0.10 0.83 7.80 -51.93 -0.41 0.42 16 35 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 38 H 0.02 0.51 7.53 -51.94 -0.39 0.12 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -33.28 339.61 -4.82 -38.11 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -5.81 Total: -6.05 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.37 Total: -5.29 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 2.60 Total: -33.59 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.70 Total: -14.96 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.28 -4.82 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.161 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds