Wall clock time and date at job start Tue Mar 31 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00281 * 2 1 4 4 H 1.48496 * 109.47036 * 269.99715 * 3 2 1 5 5 H 1.48500 * 109.46747 * 30.00023 * 3 2 1 6 6 H 1.48501 * 109.46984 * 149.99531 * 3 2 1 7 7 C 1.37878 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99572 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00337 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47082 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46776 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00325 * 359.97438 * 11 10 9 13 13 O 1.34238 * 119.99710 * 179.97438 * 11 10 9 14 14 C 1.45197 * 116.99433 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46672 * 179.97438 * 14 13 11 16 16 O 1.20755 * 120.00257 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00004 * 179.97438 * 15 14 13 18 18 C 1.53003 * 109.47328 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47126 * 180.02562 * 18 17 15 20 20 C 1.54961 * 110.92578 * 71.54077 * 19 18 17 21 21 C 1.54270 * 104.16191 * 156.29427 * 20 19 18 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 0.96999 * 119.99790 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46610 * 59.99787 * 9 7 2 26 26 H 1.09002 * 109.46748 * 300.00501 * 9 7 2 27 27 H 1.08995 * 109.47421 * 60.00027 * 10 9 7 28 28 H 1.09002 * 109.46949 * 299.99721 * 10 9 7 29 29 H 1.09008 * 109.47399 * 60.00538 * 14 13 11 30 30 H 1.08994 * 109.47946 * 300.00073 * 14 13 11 31 31 H 1.09001 * 109.47076 * 60.00766 * 17 15 14 32 32 H 1.09000 * 109.47029 * 300.00318 * 17 15 14 33 33 H 1.08995 * 109.46922 * 60.00027 * 18 17 15 34 34 H 1.09000 * 109.47141 * 300.00024 * 18 17 15 35 35 H 1.09001 * 110.67554 * 308.23161 * 19 18 17 36 36 H 1.08997 * 110.47708 * 37.64024 * 20 19 18 37 37 H 1.09002 * 110.53308 * 274.97416 * 20 19 18 38 38 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 39 39 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 40 40 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 41 41 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 42 42 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 43 43 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5284 -2.6367 0.0022 12 8 6.1326 -1.5904 0.0026 13 8 6.1995 -3.7992 0.0028 14 6 7.6495 -3.7232 0.0034 15 6 8.2255 -5.1158 0.0047 16 8 7.4899 -6.0735 0.0046 17 6 9.7195 -5.3133 0.0050 18 6 10.0361 -6.8103 0.0057 19 6 11.5529 -7.0107 0.0066 20 6 12.1609 -6.6284 1.3797 21 6 13.4823 -7.4220 1.4415 22 6 13.3220 -8.6197 0.4889 23 6 11.9080 -8.5132 -0.1189 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8888 27 1 3.6585 -3.1503 -0.8892 28 1 3.6577 -3.1506 0.8908 29 1 7.9852 -3.1908 0.8935 30 1 7.9860 -3.1913 -0.8865 31 1 10.1470 -4.8509 0.8946 32 1 10.1471 -4.8523 -0.8854 33 1 9.6087 -7.2724 -0.8841 34 1 9.6085 -7.2716 0.8958 35 1 12.0175 -6.4358 -0.7945 36 1 11.4960 -6.9309 2.1886 37 1 12.3568 -5.5571 1.4261 38 1 13.6591 -7.7744 2.4577 39 1 14.3108 -6.7936 1.1151 40 1 14.0722 -8.5720 -0.3004 41 1 13.4217 -9.5533 1.0425 42 1 11.9190 -8.8164 -1.1658 43 1 11.2029 -9.1225 0.4464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:16 Heat of formation + Delta-G solvation = -162.045063 kcal Electronic energy + Delta-G solvation = -21101.447553 eV Core-core repulsion = 17724.460791 eV Total energy + Delta-G solvation = -3376.986762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45746 -39.55334 -38.53910 -36.20159 -33.67307 -33.63456 -31.49796 -30.14714 -29.10005 -27.93618 -26.23545 -23.66357 -21.84897 -20.75280 -20.31038 -19.97555 -19.66220 -17.63003 -16.85504 -16.76934 -16.40872 -16.26122 -15.58776 -15.55568 -14.83540 -14.39766 -14.29576 -14.08790 -13.70807 -13.61710 -13.10607 -12.75419 -12.49885 -12.38836 -12.27641 -11.79161 -11.60920 -11.48614 -11.47584 -11.26781 -11.04035 -10.97294 -10.82755 -10.81135 -10.66105 -10.35434 -10.22011 -10.08599 -9.83106 -9.63317 -9.26776 -8.56536 -6.07715 -4.07736 1.68605 2.60951 2.67083 3.33209 3.40160 3.48736 3.80526 4.12450 4.22452 4.31966 4.45197 4.57181 4.68916 4.82167 4.95442 4.99899 5.04126 5.08807 5.13987 5.20790 5.24295 5.26731 5.28030 5.34644 5.40105 5.48473 5.56154 5.66575 5.72005 5.76588 5.85238 5.96640 5.98600 6.00485 6.06316 6.41347 6.69625 7.21308 7.24837 7.29117 7.69433 8.12072 8.46274 8.94839 9.53717 11.04858 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.054956 B = 0.002194 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.372840 B =12760.367951 C =13099.129951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.458 3.542 12 O -0.511 6.511 13 O -0.347 6.347 14 C 0.010 3.990 15 C 0.353 3.647 16 O -0.427 6.427 17 C -0.164 4.164 18 C -0.104 4.104 19 C -0.093 4.093 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.121 4.121 24 H 0.264 0.736 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.135 -14.911 0.797 31.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.039 4.039 10 C -0.133 4.133 11 C 0.303 3.697 12 O -0.399 6.399 13 O -0.264 6.264 14 C -0.065 4.065 15 C 0.226 3.774 16 O -0.297 6.297 17 C -0.201 4.201 18 C -0.141 4.141 19 C -0.112 4.112 20 C -0.161 4.161 21 C -0.164 4.164 22 C -0.164 4.164 23 C -0.159 4.159 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 27.788 -15.013 0.804 31.594 hybrid contribution 0.596 1.180 -0.020 1.322 sum 28.384 -13.833 0.784 31.584 Atomic orbital electron populations 1.69905 1.06264 1.27067 1.50566 1.24960 0.94736 0.99196 0.94242 0.86795 0.80553 0.83421 0.78763 1.20166 1.21305 1.18631 1.21034 0.88810 0.94849 1.51851 0.90598 1.19490 0.96974 0.89537 0.97920 1.21567 0.83029 1.03568 1.05097 1.24885 0.92863 0.80755 0.71246 1.90619 1.70582 1.33028 1.45641 1.86682 1.18930 1.36059 1.84722 1.23353 0.80357 0.97875 1.04927 1.24557 0.91652 0.89324 0.71902 1.90444 1.62647 1.43197 1.33450 1.22065 0.93258 0.99626 1.05182 1.21418 0.95012 0.94042 1.03636 1.22185 0.94799 0.96452 0.97745 1.22495 0.96523 0.99832 0.97215 1.22131 0.97824 0.96852 0.99572 1.22130 0.97188 0.98354 0.98680 1.22412 0.96508 0.96087 1.00867 0.92589 0.95581 0.96035 0.88143 0.88128 0.88133 0.88118 0.88006 0.88029 0.91055 0.91025 0.90455 0.91409 0.91590 0.91985 0.91977 0.92000 0.91985 0.91687 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.53 -14.95 9.66 -34.44 -0.33 -15.29 16 8 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 9 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 10 C -0.10 -1.89 5.75 -27.89 -0.16 -2.05 16 11 C 0.46 8.56 7.96 36.01 0.29 8.85 16 12 O -0.51 -10.59 15.73 -18.75 -0.29 -10.88 16 13 O -0.35 -5.70 9.76 -45.94 -0.45 -6.15 16 14 C 0.01 0.12 5.88 36.01 0.21 0.33 16 15 C 0.35 3.77 7.24 -29.03 -0.21 3.56 16 16 O -0.43 -6.22 16.12 -13.71 -0.22 -6.44 16 17 C -0.16 -1.08 5.53 -27.88 -0.15 -1.23 16 18 C -0.10 -0.74 4.01 -26.73 -0.11 -0.85 16 19 C -0.09 -0.55 2.86 -88.59 -0.25 -0.80 16 20 C -0.12 -0.69 5.71 -25.03 -0.14 -0.83 16 21 C -0.13 -0.68 6.80 -25.61 -0.17 -0.86 16 22 C -0.13 -0.69 6.80 -25.62 -0.17 -0.86 16 23 C -0.12 -0.72 6.27 -25.07 -0.16 -0.88 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 26 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 27 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 28 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 29 H 0.10 1.05 8.13 -51.92 -0.42 0.63 16 30 H 0.10 1.05 8.13 -51.93 -0.42 0.62 16 31 H 0.10 0.50 7.66 -51.93 -0.40 0.10 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.07 0.59 7.96 -51.93 -0.41 0.18 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.41 7.95 -51.93 -0.41 -0.01 16 37 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -33.74 355.41 -8.54 -42.28 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -7.48 Total: -5.67 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.56 Total: -9.08 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.77 Total: -26.87 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.96 Total: -23.47 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.74 -8.54 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.761 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds