Wall clock time and date at job start Tue Mar 31 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52956 * 109.35613 * 2 1 4 4 C 1.53235 * 109.40238 * 183.66685 * 3 2 1 5 5 C 1.51264 * 108.53841 * 305.37185 * 4 3 2 6 6 C 1.33086 * 120.85330 * 231.36897 * 5 4 3 7 7 C 1.46951 * 119.99723 * 347.81852 * 6 5 4 8 8 O 1.21533 * 119.99959 * 353.01529 * 7 6 5 9 9 O 1.34798 * 119.99788 * 173.01996 * 7 6 5 10 10 C 1.45197 * 116.99733 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46902 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.46925 * 64.99676 * 11 10 9 13 13 C 1.42902 * 113.99963 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47352 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99740 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00212 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00082 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99773 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47214 * 89.99969 * 18 16 14 20 20 H 1.48502 * 109.46973 * 209.99735 * 18 16 14 21 21 H 1.48500 * 109.47478 * 329.99644 * 18 16 14 22 22 C 1.51276 * 118.29869 * 51.34831 * 5 4 3 23 23 C 1.52959 * 109.41370 * 120.32237 * 2 1 3 24 24 H 1.09002 * 109.47355 * 299.82416 * 1 2 3 25 25 H 1.09006 * 109.47241 * 59.82273 * 1 2 3 26 26 H 1.09001 * 109.47595 * 179.82147 * 1 2 3 27 27 H 1.09001 * 109.41391 * 240.17878 * 2 1 3 28 28 H 1.08997 * 109.48466 * 303.64540 * 3 2 1 29 29 H 1.08999 * 109.47993 * 63.69304 * 3 2 1 30 30 H 1.09005 * 109.62159 * 185.65830 * 4 3 2 31 31 H 1.08999 * 109.78123 * 65.18120 * 4 3 2 32 32 H 1.07997 * 119.99997 * 167.81823 * 6 5 4 33 33 H 1.09004 * 109.46903 * 299.99093 * 10 9 7 34 34 H 1.08999 * 109.47609 * 59.99879 * 10 9 7 35 35 H 1.09005 * 109.46910 * 184.99406 * 11 10 9 36 36 H 1.08994 * 109.47194 * 305.00006 * 11 10 9 37 37 H 1.09002 * 109.47104 * 299.99868 * 13 12 11 38 38 H 1.08994 * 109.47015 * 60.00044 * 13 12 11 39 39 H 0.97003 * 119.99874 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.62829 * 188.93253 * 22 5 4 41 41 H 1.09007 * 109.62008 * 68.36506 * 22 5 4 42 42 H 1.09007 * 109.47756 * 296.34201 * 23 2 1 43 43 H 1.08995 * 109.48324 * 56.38418 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0369 1.4431 0.0000 4 6 3.5665 1.4453 -0.0924 5 6 4.1172 0.5912 1.0279 6 6 5.0606 1.0586 1.8420 7 6 5.7700 2.3013 1.5074 8 8 5.5877 2.8340 0.4304 9 8 6.6231 2.8503 2.3951 10 6 7.2883 4.0781 1.9975 11 6 8.2093 4.5476 3.1255 12 8 9.2567 3.5938 3.3133 13 6 10.1782 3.9390 4.3494 14 6 11.2346 2.8698 4.4590 15 1 11.2054 2.0126 3.8027 16 6 12.2389 2.9864 5.3964 17 7 13.1605 2.0531 5.4923 18 14 12.2898 4.4694 6.5311 19 1 11.5138 4.1770 7.7629 20 1 13.6989 4.7676 6.8928 21 1 11.6974 5.6424 5.8395 22 6 3.5678 -0.8078 1.1997 23 6 2.0384 -0.7283 1.2453 24 1 -0.3634 0.5111 0.8916 25 1 -0.3634 0.5166 -0.8884 26 1 -0.3634 -1.0276 -0.0032 27 1 1.8922 -0.5112 -0.8919 28 1 1.6203 1.9748 -0.8554 29 1 1.7277 1.9370 0.9212 30 1 3.9378 2.4652 0.0082 31 1 3.8786 1.0352 -1.0529 32 1 5.3048 0.5247 2.7484 33 1 7.8775 3.8973 1.0984 34 1 6.5422 4.8464 1.7946 35 1 8.6405 5.5140 2.8641 36 1 7.6354 4.6430 4.0472 37 1 10.6503 4.8926 4.1130 38 1 9.6454 4.0222 5.2966 39 1 13.8669 2.1349 6.1521 40 1 3.9402 -1.2356 2.1305 41 1 3.8774 -1.4284 0.3587 42 1 1.7291 -0.1829 2.1370 43 1 1.6227 -1.7355 1.2724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815209841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:11 Heat of formation + Delta-G solvation = -135.699398 kcal Electronic energy + Delta-G solvation = -21591.509629 eV Core-core repulsion = 18215.665301 eV Total energy + Delta-G solvation = -3375.844328 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.44784 -38.89248 -37.18724 -36.10079 -33.96737 -32.68968 -31.32111 -30.50882 -29.27795 -27.57474 -25.27730 -23.32284 -22.73890 -21.88258 -21.45735 -20.52944 -18.79386 -17.65324 -16.93980 -16.44695 -16.10713 -15.37974 -15.29990 -14.73107 -14.68126 -14.60542 -14.39841 -14.00543 -13.75312 -13.12499 -13.04390 -12.81945 -12.69840 -12.43917 -12.35470 -12.03371 -11.84923 -11.68085 -11.36268 -11.21902 -11.08270 -10.93505 -10.82659 -10.62224 -10.54752 -10.43177 -9.87258 -9.65865 -9.26092 -9.20030 -8.89824 -8.50197 -6.11758 -4.10972 1.04713 2.86699 2.98555 3.24411 3.31227 3.32200 4.33393 4.34801 4.39000 4.47442 4.50441 4.66738 4.74021 4.99472 5.06643 5.13297 5.17672 5.19205 5.19705 5.27615 5.32161 5.41053 5.43596 5.52080 5.60084 5.67828 5.71390 5.76597 5.79528 5.84869 5.87289 5.96078 5.97468 6.09769 6.27405 6.33114 6.56232 6.76609 6.97258 7.57756 7.91524 7.97753 8.64099 8.99858 9.46976 11.01250 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034416 B = 0.002589 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.368799 B =10812.600665 C =11244.549541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.111 4.111 4 C -0.125 4.125 5 C -0.016 4.016 6 C -0.204 4.204 7 C 0.496 3.504 8 O -0.517 6.517 9 O -0.338 6.338 10 C 0.075 3.925 11 C 0.057 3.943 12 O -0.375 6.375 13 C 0.168 3.832 14 C -0.519 4.519 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.266 1.266 22 C -0.093 4.093 23 C -0.112 4.112 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.004 0.996 38 H 0.001 0.999 39 H 0.267 0.733 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.350 -1.940 -9.609 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.148 4.148 4 C -0.161 4.161 5 C -0.017 4.017 6 C -0.223 4.223 7 C 0.345 3.655 8 O -0.410 6.410 9 O -0.253 6.253 10 C 0.001 3.999 11 C -0.020 4.020 12 O -0.294 6.294 13 C 0.093 3.907 14 C -0.557 4.557 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.533 5.533 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.130 4.130 23 C -0.150 4.150 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.174 -1.979 -9.895 27.121 hybrid contribution 0.253 1.031 0.837 1.352 sum -24.920 -0.948 -9.058 26.533 Atomic orbital electron populations 1.21836 0.95196 1.01639 1.01827 1.21192 0.95519 0.96395 0.98483 1.21661 0.94857 0.96130 1.02190 1.21646 0.94777 1.03047 0.96634 1.22810 0.90769 0.94826 0.93271 1.21720 1.01152 0.96251 1.03153 1.21513 0.77497 0.84426 0.82095 1.90656 1.62466 1.63595 1.24274 1.86702 1.53506 1.40071 1.45044 1.23150 0.94267 0.83575 0.98915 1.22404 0.89809 0.92904 0.96916 1.87983 1.38615 1.45339 1.57499 1.20635 0.88017 0.96726 0.85338 1.20881 1.07768 1.07281 1.19763 0.89926 1.24774 0.95055 0.96355 0.96847 1.69877 1.14358 1.33600 1.35473 0.86836 0.77748 0.83515 0.81550 1.19893 1.20763 1.19126 1.20989 0.95987 0.92607 1.03450 1.21644 0.94139 1.00818 0.98359 0.92689 0.92682 0.92728 0.91024 0.91438 0.91942 0.86416 0.90215 0.84111 0.90353 0.90375 0.91853 0.93076 0.97846 0.98168 0.92349 0.90186 0.89387 0.91552 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.18 37.15 0.34 -0.51 16 2 C -0.10 -0.66 2.62 -90.67 -0.24 -0.89 16 3 C -0.11 -0.89 5.21 -26.63 -0.14 -1.03 16 4 C -0.12 -1.27 5.29 -27.48 -0.15 -1.42 16 5 C -0.02 -0.16 5.39 -100.58 -0.54 -0.71 16 6 C -0.20 -2.52 9.78 -37.85 -0.37 -2.89 16 7 C 0.50 7.64 7.76 34.26 0.27 7.91 16 8 O -0.52 -8.37 13.01 -19.29 -0.25 -8.62 16 9 O -0.34 -5.81 10.20 -43.55 -0.44 -6.26 16 10 C 0.07 1.18 5.86 37.16 0.22 1.40 16 11 C 0.06 1.01 6.33 37.16 0.24 1.24 16 12 O -0.38 -8.94 10.30 -38.81 -0.40 -9.34 16 13 C 0.17 4.31 4.76 36.01 0.17 4.48 16 14 C -0.52 -15.63 9.99 -34.44 -0.34 -15.97 16 15 H 0.08 2.73 8.06 -52.49 -0.42 2.31 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.89 -27.76 13.96 55.43 0.77 -26.99 16 18 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 22 C -0.09 -0.71 6.04 -27.49 -0.17 -0.88 16 23 C -0.11 -0.74 5.21 -26.64 -0.14 -0.88 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.12 1.48 4.79 -52.87 -0.25 1.22 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.14 1.58 7.96 -52.49 -0.42 1.16 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 38 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 39 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16 41 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -33.26 350.36 -8.02 -41.28 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -7.36 Total: -3.97 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.95 Total: -8.13 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.99 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -1.09 Total: -24.22 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.26 -8.02 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815209841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.420 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds