Wall clock time and date at job start Tue Mar 31 2020 06:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52956 * 109.35613 * 2 1 4 4 C 1.53235 * 109.40238 * 183.66685 * 3 2 1 5 5 C 1.51264 * 108.53841 * 305.37185 * 4 3 2 6 6 C 1.33086 * 120.85330 * 231.36897 * 5 4 3 7 7 C 1.46951 * 119.99723 * 347.81852 * 6 5 4 8 8 O 1.21533 * 119.99959 * 353.01529 * 7 6 5 9 9 O 1.34798 * 119.99788 * 173.01996 * 7 6 5 10 10 C 1.45197 * 116.99733 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46902 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.46925 * 64.99676 * 11 10 9 13 13 C 1.42902 * 113.99963 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47352 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99740 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00212 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00082 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99773 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47214 * 89.99969 * 18 16 14 20 20 H 1.48502 * 109.46973 * 209.99735 * 18 16 14 21 21 H 1.48500 * 109.47478 * 329.99644 * 18 16 14 22 22 C 1.51276 * 118.29869 * 51.34831 * 5 4 3 23 23 C 1.52959 * 109.41370 * 120.32237 * 2 1 3 24 24 H 1.09002 * 109.47355 * 299.82416 * 1 2 3 25 25 H 1.09006 * 109.47241 * 59.82273 * 1 2 3 26 26 H 1.09001 * 109.47595 * 179.82147 * 1 2 3 27 27 H 1.09001 * 109.41391 * 240.17878 * 2 1 3 28 28 H 1.08997 * 109.48466 * 303.64540 * 3 2 1 29 29 H 1.08999 * 109.47993 * 63.69304 * 3 2 1 30 30 H 1.09005 * 109.62159 * 185.65830 * 4 3 2 31 31 H 1.08999 * 109.78123 * 65.18120 * 4 3 2 32 32 H 1.07997 * 119.99997 * 167.81823 * 6 5 4 33 33 H 1.09004 * 109.46903 * 299.99093 * 10 9 7 34 34 H 1.08999 * 109.47609 * 59.99879 * 10 9 7 35 35 H 1.09005 * 109.46910 * 184.99406 * 11 10 9 36 36 H 1.08994 * 109.47194 * 305.00006 * 11 10 9 37 37 H 1.09002 * 109.47104 * 299.99868 * 13 12 11 38 38 H 1.08994 * 109.47015 * 60.00044 * 13 12 11 39 39 H 0.97003 * 119.99874 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.62829 * 188.93253 * 22 5 4 41 41 H 1.09007 * 109.62008 * 68.36506 * 22 5 4 42 42 H 1.09007 * 109.47756 * 296.34201 * 23 2 1 43 43 H 1.08995 * 109.48324 * 56.38418 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0369 1.4431 0.0000 4 6 3.5665 1.4453 -0.0924 5 6 4.1172 0.5912 1.0279 6 6 5.0606 1.0586 1.8420 7 6 5.7700 2.3013 1.5074 8 8 5.5877 2.8340 0.4304 9 8 6.6231 2.8503 2.3951 10 6 7.2883 4.0781 1.9975 11 6 8.2093 4.5476 3.1255 12 8 9.2567 3.5938 3.3133 13 6 10.1782 3.9390 4.3494 14 6 11.2346 2.8698 4.4590 15 1 11.2054 2.0126 3.8027 16 6 12.2389 2.9864 5.3964 17 7 13.1605 2.0531 5.4923 18 14 12.2898 4.4694 6.5311 19 1 11.5138 4.1770 7.7629 20 1 13.6989 4.7676 6.8928 21 1 11.6974 5.6424 5.8395 22 6 3.5678 -0.8078 1.1997 23 6 2.0384 -0.7283 1.2453 24 1 -0.3634 0.5111 0.8916 25 1 -0.3634 0.5166 -0.8884 26 1 -0.3634 -1.0276 -0.0032 27 1 1.8922 -0.5112 -0.8919 28 1 1.6203 1.9748 -0.8554 29 1 1.7277 1.9370 0.9212 30 1 3.9378 2.4652 0.0082 31 1 3.8786 1.0352 -1.0529 32 1 5.3048 0.5247 2.7484 33 1 7.8775 3.8973 1.0984 34 1 6.5422 4.8464 1.7946 35 1 8.6405 5.5140 2.8641 36 1 7.6354 4.6430 4.0472 37 1 10.6503 4.8926 4.1130 38 1 9.6454 4.0222 5.2966 39 1 13.8669 2.1349 6.1521 40 1 3.9402 -1.2356 2.1305 41 1 3.8774 -1.4284 0.3587 42 1 1.7291 -0.1829 2.1370 43 1 1.6227 -1.7355 1.2724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815209841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:10 Heat of formation + Delta-G solvation = -155.371696 kcal Electronic energy + Delta-G solvation = -21592.362684 eV Core-core repulsion = 18215.665301 eV Total energy + Delta-G solvation = -3376.697383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58523 -39.70744 -38.76384 -37.42489 -34.90254 -34.74357 -31.99562 -31.95854 -30.22921 -29.45196 -26.07634 -24.12101 -24.00090 -23.78382 -22.55313 -21.23149 -19.66615 -19.11033 -18.80597 -17.90456 -17.21111 -17.00583 -16.54843 -16.29636 -15.85060 -15.32463 -15.26402 -14.96547 -14.85452 -14.61282 -14.19290 -14.11033 -13.79278 -13.46132 -13.41237 -13.26490 -12.99041 -12.64706 -12.57698 -12.47615 -12.28521 -12.02224 -11.91290 -11.83275 -11.69225 -11.55066 -11.36975 -11.15785 -10.94431 -10.62834 -10.42029 -10.13655 -8.37822 -6.46494 0.06857 1.33868 1.37608 1.48319 1.74341 1.89421 2.29551 2.94069 2.95102 3.56591 3.67916 3.89772 3.91546 3.94119 4.03446 4.10773 4.19329 4.36901 4.38697 4.45516 4.46298 4.49378 4.56046 4.67474 4.69830 4.79421 4.86763 4.95404 4.98451 5.02483 5.07565 5.15277 5.17377 5.22078 5.33806 5.39303 5.41523 5.44293 5.58595 5.73008 5.90312 6.57114 6.68597 6.76045 7.17618 8.79465 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034416 B = 0.002589 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.368799 B =10812.600665 C =11244.549541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.106 4.106 4 C -0.128 4.128 5 C 0.007 3.993 6 C -0.234 4.234 7 C 0.490 3.510 8 O -0.533 6.533 9 O -0.360 6.360 10 C 0.074 3.926 11 C 0.050 3.950 12 O -0.408 6.408 13 C 0.178 3.822 14 C -0.549 4.549 15 H 0.026 0.974 16 C 0.010 3.990 17 N -0.943 5.943 18 Si 0.960 3.040 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.242 1.242 22 C -0.094 4.094 23 C -0.109 4.109 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.273 0.727 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.332 -0.797 -8.986 28.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.144 4.144 4 C -0.164 4.164 5 C 0.006 3.994 6 C -0.253 4.253 7 C 0.340 3.660 8 O -0.427 6.427 9 O -0.277 6.277 10 C 0.001 3.999 11 C -0.026 4.026 12 O -0.328 6.328 13 C 0.102 3.898 14 C -0.587 4.587 15 H 0.045 0.955 16 C -0.188 4.188 17 N -0.582 5.582 18 Si 0.780 3.220 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.165 1.165 22 C -0.131 4.131 23 C -0.147 4.147 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.166 0.834 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -27.182 -0.838 -9.294 28.739 hybrid contribution 0.802 0.569 0.501 1.104 sum -26.380 -0.269 -8.792 27.808 Atomic orbital electron populations 1.21810 0.94231 1.02299 1.01930 1.21190 0.96288 0.95220 0.98745 1.21636 0.92952 0.97458 1.02327 1.21625 0.96500 1.01619 0.96694 1.23192 0.88794 0.95750 0.91666 1.21773 1.02874 0.95864 1.04811 1.22051 0.77185 0.84987 0.81761 1.90653 1.63045 1.64301 1.24712 1.86692 1.54151 1.40800 1.46063 1.23214 0.94715 0.84262 0.97732 1.22765 0.88647 0.92929 0.98293 1.87927 1.39942 1.47934 1.57006 1.20374 0.87520 0.95292 0.86569 1.21167 1.10418 1.07372 1.19710 0.95547 1.25907 0.93931 1.00351 0.98566 1.70040 1.15255 1.36268 1.36607 0.85551 0.78534 0.78965 0.78928 1.18344 1.19841 1.16500 1.21119 0.96847 0.90677 1.04449 1.21653 0.93015 1.01846 0.98147 0.92792 0.92435 0.91797 0.90617 0.90737 0.92348 0.88801 0.89891 0.83400 0.91500 0.87159 0.88998 0.91644 0.96295 0.96750 0.91751 0.89373 0.88063 0.91827 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.18 71.98 0.66 -0.68 16 2 C -0.10 -1.08 2.62 -10.82 -0.03 -1.11 16 3 C -0.11 -1.57 5.21 30.66 0.16 -1.41 16 4 C -0.13 -2.56 5.29 30.11 0.16 -2.40 16 5 C 0.01 0.13 5.39 -17.24 -0.09 0.04 16 6 C -0.23 -5.88 9.78 23.40 0.23 -5.65 16 7 C 0.49 15.50 7.76 70.10 0.54 16.05 16 8 O -0.53 -17.69 13.01 19.73 0.26 -17.44 16 9 O -0.36 -12.65 10.20 -54.44 -0.56 -13.21 16 10 C 0.07 2.32 5.86 71.98 0.42 2.74 16 11 C 0.05 1.70 6.33 71.98 0.46 2.15 16 12 O -0.41 -19.59 10.30 -145.56 -1.50 -21.09 16 13 C 0.18 9.01 4.76 71.24 0.34 9.35 16 14 C -0.55 -34.10 9.99 25.60 0.26 -33.85 16 15 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 16 C 0.01 0.62 5.47 84.65 0.46 1.08 16 17 N -0.94 -59.95 13.96 21.45 0.30 -59.65 16 18 Si 0.96 43.31 27.47 68.60 1.88 45.19 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 22 C -0.09 -1.26 6.04 30.11 0.18 -1.08 16 23 C -0.11 -1.18 5.21 30.66 0.16 -1.02 16 24 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 2.40 4.79 -17.33 -0.08 2.32 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.15 3.38 7.96 -2.91 -0.02 3.36 16 33 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 38 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 39 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 40 H 0.09 1.08 7.92 -2.39 -0.02 1.06 16 41 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -74.90 350.36 5.13 -69.77 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.84 Total: 12.20 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 3.91 Total: -15.78 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.30 Total: -59.65 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -1.80 Total: -51.73 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -74.90 5.13 -69.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815209841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.599 kcal (2) G-P(sol) polarization free energy of solvation -74.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds