Wall clock time and date at job start Tue Mar 31 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46851 * 269.99273 * 3 2 1 5 5 H 1.48490 * 109.47377 * 29.99322 * 3 2 1 6 6 H 1.48505 * 109.47178 * 149.99742 * 3 2 1 7 7 C 1.37879 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99912 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.46777 * 65.00539 * 12 11 10 14 14 C 1.34796 * 116.99752 * 179.97438 * 13 12 11 15 15 O 1.21530 * 120.00500 * 0.02562 * 14 13 12 16 16 C 1.46952 * 119.99798 * 179.97438 * 14 13 12 17 17 C 1.33083 * 120.00204 * 180.02562 * 16 14 13 18 18 C 1.50696 * 120.00386 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47449 * 240.00159 * 18 17 16 20 20 C 1.52997 * 109.47325 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47005 * 60.00114 * 20 19 18 22 22 C 1.53004 * 109.47201 * 300.00090 * 21 20 19 23 23 C 1.52997 * 109.47072 * 59.99498 * 22 21 20 24 24 H 0.96999 * 120.00107 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46969 * 60.00161 * 9 7 2 26 26 H 1.08999 * 109.47318 * 300.00071 * 9 7 2 27 27 H 1.09000 * 109.46865 * 60.00255 * 11 10 9 28 28 H 1.08994 * 109.47229 * 300.00235 * 11 10 9 29 29 H 1.09000 * 109.47486 * 305.00590 * 12 11 10 30 30 H 1.09001 * 109.47362 * 184.99867 * 12 11 10 31 31 H 1.07998 * 119.99957 * 0.02562 * 16 14 13 32 32 H 1.07998 * 119.99839 * 0.02562 * 17 16 14 33 33 H 1.09006 * 109.47010 * 0.02562 * 18 17 16 34 34 H 1.08997 * 109.46762 * 300.00079 * 19 18 17 35 35 H 1.08998 * 109.46923 * 59.99675 * 19 18 17 36 36 H 1.08997 * 109.47553 * 300.00505 * 20 19 18 37 37 H 1.09000 * 109.47576 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47529 * 179.97438 * 21 20 19 39 39 H 1.09006 * 109.47202 * 59.99733 * 21 20 19 40 40 H 1.09006 * 109.46751 * 299.99920 * 22 21 20 41 41 H 1.08998 * 109.47138 * 180.02562 * 22 21 20 42 42 H 1.09005 * 109.46781 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.46988 * 60.00567 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0004 13 8 3.4000 -5.8886 1.2407 14 6 4.3983 -6.7801 1.4003 15 8 4.6341 -7.5914 0.5268 16 6 5.2024 -6.7702 2.6303 17 6 6.1885 -7.6500 2.7878 18 6 7.0127 -7.6403 4.0494 19 6 8.4803 -7.3889 3.6978 20 6 9.3170 -7.3784 4.9787 21 6 9.1859 -8.7296 5.6846 22 6 7.7182 -8.9810 6.0361 23 6 6.8815 -8.9914 4.7553 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 0.9446 -4.9827 -0.8887 28 1 0.9451 -4.9822 0.8913 29 1 3.3209 -5.7958 -0.8418 30 1 2.1818 -6.9376 -0.0887 31 1 4.9932 -6.0490 3.4065 32 1 6.3979 -8.3710 2.0115 33 1 6.6564 -6.8499 4.7101 34 1 8.8363 -8.1796 3.0373 35 1 8.5738 -6.4262 3.1953 36 1 8.9610 -6.5876 5.6389 37 1 10.3626 -7.1989 4.7283 38 1 9.7824 -8.7223 6.5969 39 1 9.5420 -9.5205 5.0244 40 1 7.3621 -8.1901 6.6963 41 1 7.6249 -9.9433 6.5394 42 1 5.8359 -9.1709 5.0058 43 1 7.2376 -9.7823 4.0951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815212363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:58 Heat of formation + Delta-G solvation = -153.102981 kcal Electronic energy + Delta-G solvation = -21147.850810 eV Core-core repulsion = 17771.251806 eV Total energy + Delta-G solvation = -3376.599004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18924 -39.06001 -37.07441 -36.00040 -34.21261 -32.76065 -31.10921 -30.56206 -29.68921 -26.93873 -24.67272 -22.91724 -22.54021 -22.22804 -21.38801 -20.20323 -19.50697 -17.75885 -16.66174 -16.39921 -16.25714 -15.65772 -15.26857 -14.77991 -14.54990 -14.52997 -14.43074 -14.25229 -13.63201 -13.12692 -12.86749 -12.74266 -12.69318 -12.55257 -12.16278 -11.89424 -11.50383 -11.42304 -11.37839 -10.92106 -10.85187 -10.84164 -10.77249 -10.65784 -10.65069 -10.34707 -10.27643 -10.03237 -9.60640 -9.12052 -8.86576 -8.20314 -6.11299 -4.12860 1.05872 2.86543 3.02592 3.30744 3.35562 3.41332 4.25232 4.33311 4.33881 4.41924 4.72244 4.74709 4.81812 4.90378 4.95878 5.12089 5.12948 5.15663 5.17998 5.25237 5.26919 5.30264 5.48533 5.49485 5.67332 5.67713 5.77155 5.77644 5.83102 5.88623 5.92024 5.95204 6.03483 6.06961 6.20837 6.25297 6.62985 7.06506 7.40793 7.78887 7.91234 8.13445 8.53707 8.99865 9.51817 11.00290 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.002609 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.902029 B =10728.253004 C =11792.917730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.075 3.925 13 O -0.336 6.336 14 C 0.493 3.507 15 O -0.524 6.524 16 C -0.186 4.186 17 C -0.055 4.055 18 C -0.066 4.066 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.112 4.112 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.728 -19.027 10.793 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.001 3.999 13 O -0.252 6.252 14 C 0.340 3.660 15 O -0.416 6.416 16 C -0.205 4.205 17 C -0.073 4.073 18 C -0.084 4.084 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.149 4.149 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.145 0.855 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.795 -19.076 10.518 26.333 hybrid contribution -0.138 0.858 -0.238 0.901 sum 14.657 -18.218 10.280 25.542 Atomic orbital electron populations 1.69961 1.06100 1.27184 1.50578 1.24955 0.94999 0.99461 0.95134 0.86320 0.79679 0.82171 0.78234 1.20464 1.21062 1.19588 1.21054 0.94105 0.89300 1.50793 0.91510 1.20241 0.88761 0.83519 0.95506 1.87921 1.35306 1.12614 1.95222 1.22323 0.93270 0.85466 1.00552 1.23209 0.93649 0.98737 0.84314 1.86699 1.43338 1.53724 1.41440 1.21550 0.79030 0.78059 0.87385 1.90812 1.68534 1.38561 1.43673 1.22032 0.98247 1.03446 0.96740 1.23813 0.91582 0.94723 0.97215 1.20470 0.95028 0.99125 0.93809 1.21552 0.93188 1.02450 0.97828 1.21535 0.99826 0.97603 0.96756 1.21563 0.96503 0.97555 1.00268 1.21534 0.95135 1.01827 0.97204 1.21549 1.00434 0.96190 0.96752 0.92640 0.97612 0.97472 0.91945 0.93183 0.90507 0.90455 0.84247 0.85483 0.89779 0.91509 0.91364 0.91747 0.91786 0.92074 0.91978 0.91772 0.91843 0.91524 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -15.35 9.43 -34.44 -0.32 -15.68 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.38 5.69 36.01 0.20 5.59 16 10 O -0.39 -9.69 10.30 -38.79 -0.40 -10.09 16 11 C 0.06 1.16 6.33 37.16 0.24 1.39 16 12 C 0.07 1.24 5.86 37.16 0.22 1.46 16 13 O -0.34 -5.96 10.20 -43.54 -0.44 -6.40 16 14 C 0.49 7.79 7.91 34.26 0.27 8.06 16 15 O -0.52 -9.12 16.01 -19.29 -0.31 -9.43 16 16 C -0.19 -2.23 9.76 -37.85 -0.37 -2.60 16 17 C -0.05 -0.54 8.35 -36.10 -0.30 -0.84 16 18 C -0.07 -0.50 2.48 -91.78 -0.23 -0.73 16 19 C -0.11 -0.80 5.19 -26.73 -0.14 -0.94 16 20 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 21 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 22 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 23 C -0.11 -0.74 5.19 -26.73 -0.14 -0.88 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.14 1.49 7.87 -52.49 -0.41 1.08 16 32 H 0.13 1.31 7.49 -52.49 -0.39 0.91 16 33 H 0.08 0.63 7.81 -51.93 -0.41 0.22 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -33.12 359.62 -8.68 -41.80 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -7.52 Total: -5.76 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.14 Total: -6.23 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -1.15 Total: -25.92 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.12 -8.68 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815212363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.300 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds