Wall clock time and date at job start Tue Mar 31 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46851 * 269.99273 * 3 2 1 5 5 H 1.48490 * 109.47377 * 29.99322 * 3 2 1 6 6 H 1.48505 * 109.47178 * 149.99742 * 3 2 1 7 7 C 1.37879 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99912 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.46777 * 65.00539 * 12 11 10 14 14 C 1.34796 * 116.99752 * 179.97438 * 13 12 11 15 15 O 1.21530 * 120.00500 * 0.02562 * 14 13 12 16 16 C 1.46952 * 119.99798 * 179.97438 * 14 13 12 17 17 C 1.33083 * 120.00204 * 180.02562 * 16 14 13 18 18 C 1.50696 * 120.00386 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47449 * 240.00159 * 18 17 16 20 20 C 1.52997 * 109.47325 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47005 * 60.00114 * 20 19 18 22 22 C 1.53004 * 109.47201 * 300.00090 * 21 20 19 23 23 C 1.52997 * 109.47072 * 59.99498 * 22 21 20 24 24 H 0.96999 * 120.00107 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46969 * 60.00161 * 9 7 2 26 26 H 1.08999 * 109.47318 * 300.00071 * 9 7 2 27 27 H 1.09000 * 109.46865 * 60.00255 * 11 10 9 28 28 H 1.08994 * 109.47229 * 300.00235 * 11 10 9 29 29 H 1.09000 * 109.47486 * 305.00590 * 12 11 10 30 30 H 1.09001 * 109.47362 * 184.99867 * 12 11 10 31 31 H 1.07998 * 119.99957 * 0.02562 * 16 14 13 32 32 H 1.07998 * 119.99839 * 0.02562 * 17 16 14 33 33 H 1.09006 * 109.47010 * 0.02562 * 18 17 16 34 34 H 1.08997 * 109.46762 * 300.00079 * 19 18 17 35 35 H 1.08998 * 109.46923 * 59.99675 * 19 18 17 36 36 H 1.08997 * 109.47553 * 300.00505 * 20 19 18 37 37 H 1.09000 * 109.47576 * 180.02562 * 20 19 18 38 38 H 1.09004 * 109.47529 * 179.97438 * 21 20 19 39 39 H 1.09006 * 109.47202 * 59.99733 * 21 20 19 40 40 H 1.09006 * 109.46751 * 299.99920 * 22 21 20 41 41 H 1.08998 * 109.47138 * 180.02562 * 22 21 20 42 42 H 1.09005 * 109.46781 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.46988 * 60.00567 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0004 13 8 3.4000 -5.8886 1.2407 14 6 4.3983 -6.7801 1.4003 15 8 4.6341 -7.5914 0.5268 16 6 5.2024 -6.7702 2.6303 17 6 6.1885 -7.6500 2.7878 18 6 7.0127 -7.6403 4.0494 19 6 8.4803 -7.3889 3.6978 20 6 9.3170 -7.3784 4.9787 21 6 9.1859 -8.7296 5.6846 22 6 7.7182 -8.9810 6.0361 23 6 6.8815 -8.9914 4.7553 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 0.9446 -4.9827 -0.8887 28 1 0.9451 -4.9822 0.8913 29 1 3.3209 -5.7958 -0.8418 30 1 2.1818 -6.9376 -0.0887 31 1 4.9932 -6.0490 3.4065 32 1 6.3979 -8.3710 2.0115 33 1 6.6564 -6.8499 4.7101 34 1 8.8363 -8.1796 3.0373 35 1 8.5738 -6.4262 3.1953 36 1 8.9610 -6.5876 5.6389 37 1 10.3626 -7.1989 4.7283 38 1 9.7824 -8.7223 6.5969 39 1 9.5420 -9.5205 5.0244 40 1 7.3621 -8.1901 6.6963 41 1 7.6249 -9.9433 6.5394 42 1 5.8359 -9.1709 5.0058 43 1 7.2376 -9.7823 4.0951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815212363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:57 Heat of formation + Delta-G solvation = -171.097613 kcal Electronic energy + Delta-G solvation = -21148.631116 eV Core-core repulsion = 17771.251806 eV Total energy + Delta-G solvation = -3377.379310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43832 -39.67924 -38.77022 -37.47479 -35.02282 -34.95083 -31.86809 -31.61707 -30.71537 -29.03278 -25.67663 -24.55515 -23.56184 -23.42579 -22.44017 -20.80195 -20.42546 -18.93353 -18.69190 -17.91367 -17.61883 -17.01971 -16.41602 -16.32052 -16.21351 -15.33341 -15.23164 -15.06438 -14.93610 -14.43510 -14.23635 -13.77865 -13.58535 -13.36135 -13.28277 -13.05928 -12.95959 -12.92940 -12.70895 -12.45725 -12.03056 -12.00408 -11.95798 -11.75806 -11.70044 -11.35436 -11.29868 -11.23093 -11.03188 -10.90456 -10.42508 -10.28951 -8.33310 -6.45652 0.06015 1.39897 1.42743 1.54951 1.68824 1.90741 2.34001 3.00469 3.04445 3.48408 3.76270 3.89445 3.90936 3.93297 4.07396 4.08230 4.27719 4.37312 4.39033 4.40181 4.47605 4.60321 4.61487 4.64642 4.64941 4.76677 4.83727 4.94020 5.07315 5.15795 5.17881 5.23354 5.27735 5.28692 5.36471 5.40698 5.44366 5.44596 5.53125 5.61131 5.93736 6.48197 6.67625 6.78142 7.25873 8.78936 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018763 B = 0.002609 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.902029 B =10728.253004 C =11792.917730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.207 3.793 10 O -0.410 6.410 11 C 0.054 3.946 12 C 0.078 3.922 13 O -0.357 6.357 14 C 0.491 3.509 15 O -0.547 6.547 16 C -0.210 4.210 17 C -0.023 4.023 18 C -0.064 4.064 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.110 4.110 24 H 0.272 0.728 25 H -0.007 1.007 26 H -0.010 1.010 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.151 0.849 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.047 -19.135 11.650 27.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.132 3.868 10 O -0.330 6.330 11 C -0.023 4.023 12 C 0.004 3.996 13 O -0.273 6.273 14 C 0.339 3.661 15 O -0.441 6.441 16 C -0.229 4.229 17 C -0.042 4.042 18 C -0.082 4.082 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.148 4.148 24 H 0.080 0.920 25 H 0.011 0.989 26 H 0.008 0.992 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.169 0.831 32 H 0.142 0.858 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.112 -19.210 11.379 27.533 hybrid contribution -0.532 0.760 -0.491 1.050 sum 15.579 -18.450 10.888 26.489 Atomic orbital electron populations 1.70058 1.07678 1.28726 1.50346 1.25960 0.96014 1.03363 0.93851 0.85176 0.78360 0.76969 0.78868 1.19255 1.19731 1.18966 1.21380 0.94056 0.90932 1.52483 0.92247 1.19887 0.88577 0.84376 0.93922 1.87866 1.35585 1.14226 1.95334 1.22651 0.94459 0.83310 1.01890 1.23196 0.93131 0.99214 0.84037 1.86690 1.44186 1.54723 1.41740 1.22163 0.78528 0.77173 0.88197 1.90789 1.69144 1.39409 1.44739 1.22040 0.99342 1.05521 0.96002 1.24045 0.89914 0.92655 0.97559 1.20537 0.94932 1.00084 0.92696 1.21556 0.92815 1.02169 0.98484 1.21529 0.99880 0.98004 0.96174 1.21566 0.96478 0.97177 1.00586 1.21530 0.95029 1.02323 0.96662 1.21548 1.00697 0.95376 0.97172 0.91954 0.98942 0.99230 0.89866 0.92512 0.91117 0.87330 0.83115 0.85789 0.89363 0.91225 0.92079 0.91809 0.91258 0.91326 0.91799 0.91767 0.91033 0.91603 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.98 44.71 29.54 68.60 2.03 46.73 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -33.42 9.43 25.60 0.24 -33.17 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.81 5.69 71.24 0.41 12.22 16 10 O -0.41 -20.74 10.30 -145.57 -1.50 -22.24 16 11 C 0.05 2.02 6.33 71.98 0.46 2.48 16 12 C 0.08 2.56 5.86 71.98 0.42 2.98 16 13 O -0.36 -12.71 10.20 -54.41 -0.56 -13.27 16 14 C 0.49 15.52 7.91 70.10 0.55 16.08 16 15 O -0.55 -19.02 16.01 19.74 0.32 -18.71 16 16 C -0.21 -4.97 9.76 23.40 0.23 -4.74 16 17 C -0.02 -0.43 8.35 24.53 0.20 -0.23 16 18 C -0.06 -0.88 2.48 -11.54 -0.03 -0.90 16 19 C -0.11 -1.43 5.19 30.59 0.16 -1.27 16 20 C -0.12 -1.25 5.92 30.59 0.18 -1.07 16 21 C -0.12 -1.11 5.92 30.60 0.18 -0.93 16 22 C -0.12 -1.14 5.92 30.59 0.18 -0.95 16 23 C -0.11 -1.27 5.19 30.59 0.16 -1.11 16 24 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.15 3.15 7.87 -2.91 -0.02 3.13 16 32 H 0.12 2.43 7.49 -2.91 -0.02 2.41 16 33 H 0.09 1.18 7.81 -2.38 -0.02 1.16 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -70.87 359.62 5.33 -65.54 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 0.95 Total: 7.41 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 3.81 Total: -9.77 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.28 Total: -55.69 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -1.74 Total: -54.21 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.87 5.33 -65.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815212363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.561 kcal (2) G-P(sol) polarization free energy of solvation -70.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds