Wall clock time and date at job start Tue Mar 31 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00171 * 2 1 4 4 H 1.48498 * 109.46924 * 269.99816 * 3 2 1 5 5 H 1.48494 * 109.46851 * 30.00093 * 3 2 1 6 6 H 1.48500 * 109.47177 * 150.00078 * 3 2 1 7 7 C 1.37878 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00293 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99826 * 359.97438 * 7 2 1 10 10 O 1.42893 * 109.46860 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99931 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46956 * 179.97438 * 11 10 9 13 13 O 1.45192 * 109.47302 * 65.00277 * 12 11 10 14 14 C 1.34798 * 117.00185 * 180.02562 * 13 12 11 15 15 O 1.21539 * 119.99836 * 359.97438 * 14 13 12 16 16 C 1.46946 * 120.00492 * 179.97438 * 14 13 12 17 17 C 1.33075 * 120.00407 * 186.62886 * 16 14 13 18 18 C 1.50705 * 119.99889 * 16.61517 * 17 16 14 19 19 C 1.52997 * 109.47240 * 253.96649 * 18 17 16 20 20 C 1.53005 * 109.47022 * 180.02562 * 19 18 17 21 21 C 1.52990 * 109.47115 * 59.99744 * 20 19 18 22 22 C 1.52992 * 109.47644 * 300.00265 * 21 20 19 23 23 C 1.53002 * 109.47403 * 59.99890 * 22 21 20 24 24 H 0.97002 * 119.99899 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47252 * 60.00015 * 9 7 2 26 26 H 1.08997 * 109.46828 * 299.99754 * 9 7 2 27 27 H 1.09001 * 109.46892 * 59.99631 * 11 10 9 28 28 H 1.08995 * 109.46859 * 299.99382 * 11 10 9 29 29 H 1.08998 * 109.47015 * 304.99597 * 12 11 10 30 30 H 1.09001 * 109.46595 * 185.00538 * 12 11 10 31 31 H 1.08006 * 119.99708 * 6.35444 * 16 14 13 32 32 H 1.08004 * 120.00231 * 196.61928 * 17 16 14 33 33 H 1.09003 * 109.46961 * 13.97091 * 18 17 16 34 34 H 1.09002 * 109.47125 * 299.99730 * 19 18 17 35 35 H 1.08998 * 109.47073 * 60.00348 * 19 18 17 36 36 H 1.09002 * 109.46745 * 299.99711 * 20 19 18 37 37 H 1.09000 * 109.46739 * 180.02562 * 20 19 18 38 38 H 1.09010 * 109.47276 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.47341 * 60.00332 * 21 20 19 40 40 H 1.09003 * 109.47187 * 300.00015 * 22 21 20 41 41 H 1.09001 * 109.47911 * 180.02562 * 22 21 20 42 42 H 1.08992 * 109.47338 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.46847 * 59.99917 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9562 -0.0006 13 8 3.4000 -5.8886 1.2394 14 6 4.3991 -6.7793 1.3986 15 8 4.6348 -7.5907 0.5249 16 6 5.2034 -6.7695 2.6284 17 6 6.2707 -7.5576 2.7319 18 6 6.8775 -8.1704 1.4960 19 6 6.5311 -9.6597 1.4423 20 6 7.1478 -10.2818 0.1879 21 6 8.6678 -10.1129 0.2294 22 6 9.0143 -8.6237 0.2831 23 6 8.3977 -8.0015 1.5375 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 0.9444 -4.9827 -0.8897 28 1 0.9452 -4.9822 0.8903 29 1 3.3208 -5.7958 -0.8430 30 1 2.1818 -6.9375 -0.0899 31 1 4.9309 -6.1193 3.4467 32 1 6.7019 -7.7583 3.7016 33 1 6.4804 -7.6728 0.6112 34 1 6.9284 -10.1572 2.3271 35 1 5.4482 -9.7800 1.4132 36 1 6.7509 -9.7843 -0.6970 37 1 6.9006 -11.3427 0.1495 38 1 9.1073 -10.5566 -0.6642 39 1 9.0647 -10.6104 1.1143 40 1 8.6175 -8.1262 -0.6019 41 1 10.0972 -8.5033 0.3122 42 1 8.6441 -6.9404 1.5755 43 1 8.7945 -8.4990 2.4225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815212364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:03 Heat of formation + Delta-G solvation = -140.952867 kcal Electronic energy + Delta-G solvation = -21786.678066 eV Core-core repulsion = 18410.605931 eV Total energy + Delta-G solvation = -3376.072136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.40380 -38.76277 -37.03740 -36.00393 -33.97089 -32.76312 -30.89696 -30.47436 -29.59902 -26.93898 -24.50012 -22.73452 -22.55540 -22.27309 -21.54689 -20.06414 -19.47558 -17.63131 -16.52270 -16.41154 -16.15680 -15.35816 -15.16745 -14.76060 -14.58679 -14.36605 -14.27283 -13.99413 -13.65628 -13.25984 -12.98918 -12.73244 -12.56503 -12.34130 -12.03959 -11.88105 -11.50856 -11.33279 -11.29292 -10.91422 -10.84137 -10.76967 -10.72513 -10.51989 -10.35775 -10.21122 -10.06198 -9.80562 -9.37826 -9.12202 -8.86665 -8.20499 -6.11514 -4.13100 1.04756 2.94121 2.99377 3.30585 3.35412 3.41183 4.33230 4.40481 4.55153 4.62317 4.73287 4.82530 4.93826 5.07466 5.13958 5.25064 5.26333 5.28600 5.34885 5.35472 5.40380 5.49097 5.49997 5.61802 5.81468 5.83514 5.89351 5.94515 5.96446 5.97324 6.04129 6.08124 6.15607 6.20783 6.22815 6.42032 6.75563 7.06322 7.40611 7.78684 7.94749 8.13275 8.53590 8.99647 9.51635 11.00086 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.002787 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.452171 B =10043.304315 C =10550.603802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.338 6.338 14 C 0.489 3.511 15 O -0.511 6.511 16 C -0.195 4.195 17 C -0.049 4.049 18 C -0.087 4.087 19 C -0.097 4.097 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.113 4.113 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.049 -20.413 4.252 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.254 6.254 14 C 0.336 3.664 15 O -0.403 6.403 16 C -0.214 4.214 17 C -0.067 4.067 18 C -0.105 4.105 19 C -0.135 4.135 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.114 -20.464 3.974 25.175 hybrid contribution -0.100 0.907 -0.024 0.913 sum 14.014 -19.557 3.950 24.382 Atomic orbital electron populations 1.69961 1.06107 1.27186 1.50575 1.24952 0.94993 0.99456 0.95125 0.86323 0.79686 0.82180 0.78236 1.20460 1.21058 1.19587 1.21056 0.94106 0.89306 1.50806 0.91510 1.20235 0.88757 0.83524 0.95489 1.87919 1.35304 1.12621 1.95218 1.22324 0.93321 0.85495 1.00497 1.23173 0.93632 0.98647 0.84356 1.86707 1.43605 1.53722 1.41381 1.21622 0.79509 0.78314 0.86952 1.90757 1.67488 1.38451 1.43616 1.22056 0.98464 1.03713 0.97153 1.23874 0.92524 0.90808 0.99497 1.20919 0.94739 0.97269 0.97599 1.21343 1.00983 0.93596 0.97544 1.21500 0.95088 1.00201 0.98742 1.21542 0.96326 0.96352 1.01446 1.21504 0.99957 0.95836 0.98326 1.21595 0.94437 1.00764 0.98235 0.92636 0.97621 0.97500 0.92019 0.93233 0.90588 0.90523 0.83990 0.85041 0.87135 0.92672 0.91490 0.91613 0.92303 0.92293 0.92247 0.91813 0.92089 0.91895 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -15.34 9.43 -34.44 -0.32 -15.66 16 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 9 C 0.19 5.38 5.69 36.01 0.20 5.58 16 10 O -0.39 -9.65 10.30 -38.79 -0.40 -10.05 16 11 C 0.06 1.15 6.33 37.16 0.24 1.38 16 12 C 0.08 1.23 5.86 37.16 0.22 1.45 16 13 O -0.34 -5.85 10.20 -43.54 -0.44 -6.29 16 14 C 0.49 7.34 7.66 34.26 0.26 7.60 16 15 O -0.51 -8.02 12.38 -19.29 -0.24 -8.25 16 16 C -0.20 -2.26 10.12 -37.85 -0.38 -2.65 16 17 C -0.05 -0.46 8.81 -36.10 -0.32 -0.78 16 18 C -0.09 -0.89 1.64 -91.77 -0.15 -1.04 16 19 C -0.10 -0.93 4.92 -26.73 -0.13 -1.06 16 20 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 21 C -0.12 -0.93 5.92 -26.74 -0.16 -1.09 16 22 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 23 C -0.11 -0.96 5.19 -26.73 -0.14 -1.10 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.11 1.45 5.33 -51.93 -0.28 1.17 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.75 7.50 -51.93 -0.39 0.36 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 353.08 15.07 5.32 5.32 Total: -1.00 -32.44 353.08 -8.54 -40.98 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -7.40 Total: -4.19 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.10 Total: -8.21 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -1.08 Total: -24.59 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.44 -8.54 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815212364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.970 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds