Wall clock time and date at job start Tue Mar 31 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00171 * 2 1 4 4 H 1.48498 * 109.46924 * 269.99816 * 3 2 1 5 5 H 1.48494 * 109.46851 * 30.00093 * 3 2 1 6 6 H 1.48500 * 109.47177 * 150.00078 * 3 2 1 7 7 C 1.37878 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00293 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99826 * 359.97438 * 7 2 1 10 10 O 1.42893 * 109.46860 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99931 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46956 * 179.97438 * 11 10 9 13 13 O 1.45192 * 109.47302 * 65.00277 * 12 11 10 14 14 C 1.34798 * 117.00185 * 180.02562 * 13 12 11 15 15 O 1.21539 * 119.99836 * 359.97438 * 14 13 12 16 16 C 1.46946 * 120.00492 * 179.97438 * 14 13 12 17 17 C 1.33075 * 120.00407 * 186.62886 * 16 14 13 18 18 C 1.50705 * 119.99889 * 16.61517 * 17 16 14 19 19 C 1.52997 * 109.47240 * 253.96649 * 18 17 16 20 20 C 1.53005 * 109.47022 * 180.02562 * 19 18 17 21 21 C 1.52990 * 109.47115 * 59.99744 * 20 19 18 22 22 C 1.52992 * 109.47644 * 300.00265 * 21 20 19 23 23 C 1.53002 * 109.47403 * 59.99890 * 22 21 20 24 24 H 0.97002 * 119.99899 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47252 * 60.00015 * 9 7 2 26 26 H 1.08997 * 109.46828 * 299.99754 * 9 7 2 27 27 H 1.09001 * 109.46892 * 59.99631 * 11 10 9 28 28 H 1.08995 * 109.46859 * 299.99382 * 11 10 9 29 29 H 1.08998 * 109.47015 * 304.99597 * 12 11 10 30 30 H 1.09001 * 109.46595 * 185.00538 * 12 11 10 31 31 H 1.08006 * 119.99708 * 6.35444 * 16 14 13 32 32 H 1.08004 * 120.00231 * 196.61928 * 17 16 14 33 33 H 1.09003 * 109.46961 * 13.97091 * 18 17 16 34 34 H 1.09002 * 109.47125 * 299.99730 * 19 18 17 35 35 H 1.08998 * 109.47073 * 60.00348 * 19 18 17 36 36 H 1.09002 * 109.46745 * 299.99711 * 20 19 18 37 37 H 1.09000 * 109.46739 * 180.02562 * 20 19 18 38 38 H 1.09010 * 109.47276 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.47341 * 60.00332 * 21 20 19 40 40 H 1.09003 * 109.47187 * 300.00015 * 22 21 20 41 41 H 1.09001 * 109.47911 * 180.02562 * 22 21 20 42 42 H 1.08992 * 109.47338 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.46847 * 59.99917 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9562 -0.0006 13 8 3.4000 -5.8886 1.2394 14 6 4.3991 -6.7793 1.3986 15 8 4.6348 -7.5907 0.5249 16 6 5.2034 -6.7695 2.6284 17 6 6.2707 -7.5576 2.7319 18 6 6.8775 -8.1704 1.4960 19 6 6.5311 -9.6597 1.4423 20 6 7.1478 -10.2818 0.1879 21 6 8.6678 -10.1129 0.2294 22 6 9.0143 -8.6237 0.2831 23 6 8.3977 -8.0015 1.5375 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 0.9444 -4.9827 -0.8897 28 1 0.9452 -4.9822 0.8903 29 1 3.3208 -5.7958 -0.8430 30 1 2.1818 -6.9375 -0.0899 31 1 4.9309 -6.1193 3.4467 32 1 6.7019 -7.7583 3.7016 33 1 6.4804 -7.6728 0.6112 34 1 6.9284 -10.1572 2.3271 35 1 5.4482 -9.7800 1.4132 36 1 6.7509 -9.7843 -0.6970 37 1 6.9006 -11.3427 0.1495 38 1 9.1073 -10.5566 -0.6642 39 1 9.0647 -10.6104 1.1143 40 1 8.6175 -8.1262 -0.6019 41 1 10.0972 -8.5033 0.3122 42 1 8.6441 -6.9404 1.5755 43 1 8.7945 -8.4990 2.4225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815212364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:02 Heat of formation + Delta-G solvation = -158.843697 kcal Electronic energy + Delta-G solvation = -21787.453871 eV Core-core repulsion = 18410.605931 eV Total energy + Delta-G solvation = -3376.847940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53841 -39.62964 -38.69516 -37.38411 -34.96198 -34.82551 -31.83994 -31.59689 -30.62786 -29.03390 -25.55599 -24.55206 -23.56647 -23.42621 -22.69640 -20.86755 -20.41053 -18.81353 -18.63990 -17.88691 -17.25487 -17.00970 -16.40438 -16.25911 -16.09192 -15.44555 -15.19048 -15.03535 -14.77439 -14.33524 -14.27620 -13.97557 -13.68934 -13.51991 -13.21983 -13.04587 -12.93093 -12.76682 -12.71315 -12.44541 -12.28244 -12.00968 -11.98891 -11.68804 -11.49832 -11.30176 -11.22999 -10.96702 -10.93030 -10.80489 -10.29596 -10.21170 -8.33781 -6.46254 0.12417 1.39512 1.42444 1.54655 1.80589 1.94033 2.33665 3.00008 3.04862 3.61574 3.80141 3.87142 3.92637 3.92855 4.08805 4.20878 4.33022 4.40322 4.42064 4.48321 4.53007 4.62798 4.65339 4.66270 4.70474 4.80631 4.83122 4.92499 5.09660 5.14795 5.15641 5.22616 5.26347 5.28578 5.37756 5.42571 5.49572 5.52091 5.52843 5.77264 5.93214 6.47949 6.76203 6.79879 7.25374 8.78528 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.002787 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.452171 B =10043.304315 C =10550.603802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.053 3.947 12 C 0.081 3.919 13 O -0.362 6.362 14 C 0.481 3.519 15 O -0.526 6.526 16 C -0.222 4.222 17 C -0.020 4.020 18 C -0.093 4.093 19 C -0.094 4.094 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.109 4.109 24 H 0.272 0.728 25 H -0.008 1.008 26 H -0.011 1.011 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.156 0.844 32 H 0.173 0.827 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.955 -20.854 5.439 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.023 4.023 12 C 0.007 3.993 13 O -0.279 6.279 14 C 0.330 3.670 15 O -0.419 6.419 16 C -0.241 4.241 17 C -0.038 4.038 18 C -0.111 4.111 19 C -0.131 4.131 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.146 4.146 24 H 0.081 0.919 25 H 0.010 0.990 26 H 0.007 0.993 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.173 0.827 32 H 0.190 0.810 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.018 -20.933 5.156 26.858 hybrid contribution -0.681 0.904 -0.418 1.207 sum 15.338 -20.029 4.738 25.668 Atomic orbital electron populations 1.70058 1.07697 1.28741 1.50331 1.25962 0.96009 1.03369 0.93819 0.85174 0.78362 0.76947 0.78880 1.19236 1.19703 1.18960 1.21384 0.94059 0.90937 1.52525 0.92244 1.19878 0.88574 0.84402 0.93867 1.87864 1.35580 1.14235 1.95321 1.22649 0.94561 0.83380 1.01732 1.23107 0.93055 0.98952 0.84185 1.86696 1.44632 1.55003 1.41569 1.22311 0.79161 0.77655 0.87922 1.90758 1.67712 1.38942 1.44439 1.22159 0.99644 1.06124 0.96171 1.24282 0.90775 0.87941 1.00761 1.20907 0.96095 0.97445 0.96656 1.21306 0.99792 0.93282 0.98721 1.21499 0.96153 1.00419 0.97549 1.21523 0.95134 0.96089 1.02493 1.21529 1.00743 0.96064 0.97520 1.21580 0.92851 1.00936 0.99259 0.91939 0.98993 0.99293 0.90060 0.92640 0.91335 0.87550 0.82656 0.80974 0.90578 0.90409 0.93597 0.93960 0.91347 0.91743 0.90657 0.93731 0.90627 0.92225 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.98 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -33.56 9.43 25.60 0.24 -33.32 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.89 5.69 71.24 0.41 12.30 16 10 O -0.41 -20.86 10.30 -145.57 -1.50 -22.36 16 11 C 0.05 2.03 6.33 71.98 0.46 2.49 16 12 C 0.08 2.66 5.86 71.98 0.42 3.08 16 13 O -0.36 -12.82 10.20 -54.44 -0.56 -13.37 16 14 C 0.48 14.73 7.66 70.10 0.54 15.26 16 15 O -0.53 -17.01 12.38 19.71 0.24 -16.77 16 16 C -0.22 -5.00 10.12 23.40 0.24 -4.77 16 17 C -0.02 -0.33 8.81 24.53 0.22 -0.11 16 18 C -0.09 -1.79 1.64 -11.54 -0.02 -1.81 16 19 C -0.09 -1.67 4.92 30.59 0.15 -1.52 16 20 C -0.12 -2.04 5.92 30.59 0.18 -1.86 16 21 C -0.11 -1.58 5.92 30.59 0.18 -1.39 16 22 C -0.12 -1.83 5.92 30.59 0.18 -1.65 16 23 C -0.11 -1.63 5.19 30.60 0.16 -1.47 16 24 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 27 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.08 2.05 5.33 -2.39 -0.01 2.04 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 1.01 7.50 -2.39 -0.02 0.99 16 36 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.43 353.08 5.27 -66.16 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.96 Total: 9.27 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 3.81 Total: -13.90 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.28 Total: -55.85 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -1.81 Total: -52.50 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -71.43 5.27 -66.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815212364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.682 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds