Wall clock time and date at job start Tue Mar 31 2020 06:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48502 * 109.47113 * 270.00501 * 3 2 1 5 5 H 1.48502 * 109.46921 * 29.99915 * 3 2 1 6 6 H 1.48498 * 109.47275 * 150.00280 * 3 2 1 7 7 C 1.37883 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99537 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00337 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.42896 * 113.99830 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47172 * 179.97438 * 11 10 9 13 13 O 1.45208 * 109.46666 * 64.99892 * 12 11 10 14 14 C 1.34232 * 116.99618 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00236 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00079 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.46862 * 300.00390 * 16 14 13 18 18 C 1.53006 * 109.47239 * 59.99547 * 16 14 13 19 19 C 1.52998 * 109.46818 * 120.00270 * 18 16 14 20 20 C 1.52998 * 109.46998 * 299.99953 * 19 18 16 21 21 C 1.52996 * 109.47303 * 60.00342 * 20 19 18 22 22 C 1.52997 * 109.47466 * 179.97438 * 16 14 13 23 23 C 1.53000 * 109.47060 * 180.02562 * 22 16 14 24 24 C 1.52992 * 109.47451 * 60.00299 * 19 18 16 25 25 H 0.97001 * 120.00209 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47085 * 59.99265 * 9 7 2 27 27 H 1.09000 * 109.46750 * 299.99528 * 9 7 2 28 28 H 1.08995 * 109.47362 * 59.99944 * 11 10 9 29 29 H 1.08997 * 109.47074 * 299.99530 * 11 10 9 30 30 H 1.08998 * 109.46939 * 305.00172 * 12 11 10 31 31 H 1.08996 * 109.47314 * 184.99353 * 12 11 10 32 32 H 1.09002 * 109.46898 * 0.02562 * 18 16 14 33 33 H 1.08995 * 109.47367 * 240.00690 * 18 16 14 34 34 H 1.09002 * 109.46792 * 180.02562 * 19 18 16 35 35 H 1.08998 * 109.47779 * 300.00041 * 20 19 18 36 36 H 1.09004 * 109.47105 * 180.02562 * 20 19 18 37 37 H 1.08996 * 109.47452 * 239.99542 * 21 20 19 38 38 H 1.09000 * 109.47054 * 119.99702 * 21 20 19 39 39 H 1.09002 * 109.47153 * 59.99773 * 22 16 14 40 40 H 1.09004 * 109.46724 * 180.02562 * 23 22 16 41 41 H 1.09001 * 109.47194 * 299.99650 * 23 22 16 42 42 H 1.09005 * 109.47280 * 59.99704 * 24 19 18 43 43 H 1.09000 * 109.47344 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5413 -0.0001 11 6 5.4123 -2.6542 -0.0001 12 6 5.8069 -4.1325 0.0004 13 8 5.3725 -4.7497 -1.2401 14 6 5.6434 -6.0548 -1.3989 15 8 6.2245 -6.6612 -0.5303 16 6 5.2237 -6.7634 -2.6609 17 1 4.1406 -6.7043 -2.7676 18 6 5.8918 -6.0979 -3.8658 19 6 6.7633 -7.1220 -4.5956 20 6 7.8382 -7.6484 -3.6426 21 6 7.1701 -8.3138 -2.4377 22 6 5.6502 -8.2309 -2.5878 23 6 5.2246 -8.9501 -3.8694 24 6 5.8918 -8.2850 -5.0737 25 1 -0.4850 0.8400 0.0004 26 1 3.8745 -0.6808 0.8905 27 1 3.8751 -0.6797 -0.8895 28 1 5.8151 -2.1707 0.8898 29 1 5.8150 -2.1706 -0.8901 30 1 5.3311 -4.6352 0.8424 31 1 6.8897 -4.2195 0.0898 32 1 6.5131 -5.2696 -3.5251 33 1 5.1261 -5.7229 -4.5447 34 1 7.2397 -6.6478 -5.4537 35 1 8.4593 -6.8199 -3.3020 36 1 8.4594 -8.3777 -4.1627 37 1 7.4737 -7.8014 -1.5249 38 1 7.4736 -9.3594 -2.3855 39 1 5.1745 -8.7052 -1.7294 40 1 5.5281 -9.9957 -3.8171 41 1 4.1414 -8.8915 -3.9764 42 1 5.1259 -7.9100 -5.7527 43 1 6.5125 -9.0144 -5.5940 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815251002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:34 Heat of formation + Delta-G solvation = -156.030047 kcal Electronic energy + Delta-G solvation = -22664.127833 eV Core-core repulsion = 19287.401902 eV Total energy + Delta-G solvation = -3376.725931 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37113 -39.42854 -37.16720 -36.07086 -32.72135 -31.92216 -31.53954 -30.99046 -30.11277 -27.59926 -24.41482 -22.74390 -22.58670 -22.06223 -21.85092 -20.67475 -17.75096 -17.18204 -16.99328 -16.72199 -16.55074 -16.05639 -15.81287 -15.25244 -14.77464 -14.67116 -14.14062 -13.25301 -13.16552 -12.97413 -12.55942 -12.50173 -12.34754 -12.27825 -12.23984 -12.21121 -12.16685 -11.86123 -11.70853 -11.14953 -10.96768 -10.86365 -10.68073 -10.56804 -10.41331 -10.09303 -10.03823 -9.88705 -9.68926 -9.22001 -8.91881 -8.52076 -6.13364 -4.12743 2.30970 2.77481 3.23145 3.30117 3.30954 4.22052 4.33367 4.37198 4.42673 4.48268 4.84066 4.94174 5.02137 5.06225 5.09867 5.12921 5.15458 5.17639 5.17826 5.23555 5.33144 5.38400 5.44813 5.56510 5.69005 5.77104 5.79306 5.87310 5.87474 5.95544 6.01767 6.07046 6.12264 6.13365 6.23222 6.27447 6.54224 6.67757 6.95294 7.55983 7.88400 7.95424 8.62178 8.97966 9.45335 10.99657 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028215 B = 0.003253 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.125175 B = 8605.811477 C = 8903.421368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.375 6.375 11 C 0.058 3.942 12 C 0.074 3.926 13 O -0.340 6.340 14 C 0.466 3.534 15 O -0.512 6.512 16 C -0.076 4.076 17 H 0.110 0.890 18 C -0.104 4.104 19 C -0.088 4.088 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.068 4.068 23 C -0.113 4.113 24 C -0.114 4.114 25 H 0.267 0.733 26 H 0.004 0.996 27 H 0.001 0.999 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.144 -15.628 -9.038 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.294 6.294 11 C -0.020 4.020 12 C 0.000 4.000 13 O -0.256 6.256 14 C 0.310 3.690 15 O -0.402 6.402 16 C -0.095 4.095 17 H 0.128 0.872 18 C -0.142 4.142 19 C -0.106 4.106 20 C -0.153 4.153 21 C -0.165 4.165 22 C -0.087 4.087 23 C -0.151 4.151 24 C -0.152 4.152 25 H 0.077 0.923 26 H 0.021 0.979 27 H 0.018 0.982 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.020 -15.798 -8.751 24.141 hybrid contribution 0.554 1.234 0.211 1.369 sum 16.574 -14.564 -8.540 23.659 Atomic orbital electron populations 1.69872 1.06065 1.27124 1.50236 1.24769 0.94816 0.98755 0.94612 0.86843 0.80318 0.83728 0.78800 1.19873 1.20753 1.19118 1.20882 0.88199 0.95381 1.51327 0.89929 1.20631 0.96323 0.79272 0.94448 1.87977 1.16663 1.29736 1.95073 1.22394 0.86109 0.92936 1.00546 1.23155 0.98996 0.93151 0.84710 1.86608 1.73404 1.24380 1.41194 1.23711 0.75727 0.80910 0.88689 1.90561 1.39038 1.66913 1.43660 1.21093 1.02967 0.94827 0.90612 0.87192 1.21537 0.99527 0.97680 0.95457 1.21071 0.95913 0.95748 0.97878 1.21581 0.97289 1.00078 0.96370 1.21792 0.94160 1.01027 0.99507 1.20859 0.97000 0.92425 0.98403 1.21531 1.00413 0.99188 0.93927 1.21545 0.98935 0.97288 0.97424 0.92323 0.97862 0.98174 0.91900 0.93092 0.90406 0.90445 0.91020 0.90256 0.90773 0.92309 0.92087 0.89432 0.92169 0.90343 0.91533 0.91632 0.91714 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.96 55.43 0.77 -26.83 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -15.54 9.99 -34.44 -0.34 -15.89 16 8 H 0.08 2.71 8.06 -52.48 -0.42 2.28 16 9 C 0.17 4.28 4.76 36.00 0.17 4.45 16 10 O -0.38 -8.83 10.30 -38.80 -0.40 -9.23 16 11 C 0.06 1.00 6.33 37.16 0.24 1.24 16 12 C 0.07 1.14 5.85 37.16 0.22 1.36 16 13 O -0.34 -5.60 10.00 -42.03 -0.42 -6.03 16 14 C 0.47 6.82 6.69 36.00 0.24 7.06 16 15 O -0.51 -8.18 13.41 -18.75 -0.25 -8.43 16 16 C -0.08 -0.87 2.67 -91.77 -0.24 -1.11 16 17 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.10 -1.05 5.32 -26.73 -0.14 -1.19 16 19 C -0.09 -0.74 3.19 -90.63 -0.29 -1.03 16 20 C -0.12 -1.03 5.71 -26.73 -0.15 -1.18 16 21 C -0.13 -1.30 5.39 -26.76 -0.14 -1.44 16 22 C -0.07 -0.69 2.36 -90.65 -0.21 -0.91 16 23 C -0.11 -0.91 5.70 -26.78 -0.15 -1.07 16 24 C -0.11 -0.86 5.71 -26.79 -0.15 -1.02 16 25 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 26 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 27 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 31 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 32 H 0.07 0.78 7.49 -51.93 -0.39 0.39 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 1.09 5.52 -51.93 -0.29 0.80 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 337.23 15.07 5.08 5.08 Total: -1.00 -32.77 337.23 -8.32 -41.10 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -7.37 Total: -3.56 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.07 Total: -8.70 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.77 Total: -26.83 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -1.07 Total: -23.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.77 -8.32 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815251002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.931 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds