Wall clock time and date at job start Tue Mar 31 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48502 * 109.47113 * 270.00501 * 3 2 1 5 5 H 1.48502 * 109.46921 * 29.99915 * 3 2 1 6 6 H 1.48498 * 109.47275 * 150.00280 * 3 2 1 7 7 C 1.37883 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99537 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00337 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.42896 * 113.99830 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47172 * 179.97438 * 11 10 9 13 13 O 1.45208 * 109.46666 * 64.99892 * 12 11 10 14 14 C 1.34232 * 116.99618 * 180.02562 * 13 12 11 15 15 O 1.20826 * 120.00236 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00079 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.46862 * 300.00390 * 16 14 13 18 18 C 1.53006 * 109.47239 * 59.99547 * 16 14 13 19 19 C 1.52998 * 109.46818 * 120.00270 * 18 16 14 20 20 C 1.52998 * 109.46998 * 299.99953 * 19 18 16 21 21 C 1.52996 * 109.47303 * 60.00342 * 20 19 18 22 22 C 1.52997 * 109.47466 * 179.97438 * 16 14 13 23 23 C 1.53000 * 109.47060 * 180.02562 * 22 16 14 24 24 C 1.52992 * 109.47451 * 60.00299 * 19 18 16 25 25 H 0.97001 * 120.00209 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47085 * 59.99265 * 9 7 2 27 27 H 1.09000 * 109.46750 * 299.99528 * 9 7 2 28 28 H 1.08995 * 109.47362 * 59.99944 * 11 10 9 29 29 H 1.08997 * 109.47074 * 299.99530 * 11 10 9 30 30 H 1.08998 * 109.46939 * 305.00172 * 12 11 10 31 31 H 1.08996 * 109.47314 * 184.99353 * 12 11 10 32 32 H 1.09002 * 109.46898 * 0.02562 * 18 16 14 33 33 H 1.08995 * 109.47367 * 240.00690 * 18 16 14 34 34 H 1.09002 * 109.46792 * 180.02562 * 19 18 16 35 35 H 1.08998 * 109.47779 * 300.00041 * 20 19 18 36 36 H 1.09004 * 109.47105 * 180.02562 * 20 19 18 37 37 H 1.08996 * 109.47452 * 239.99542 * 21 20 19 38 38 H 1.09000 * 109.47054 * 119.99702 * 21 20 19 39 39 H 1.09002 * 109.47153 * 59.99773 * 22 16 14 40 40 H 1.09004 * 109.46724 * 180.02562 * 23 22 16 41 41 H 1.09001 * 109.47194 * 299.99650 * 23 22 16 42 42 H 1.09005 * 109.47280 * 59.99704 * 24 19 18 43 43 H 1.09000 * 109.47344 * 179.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5413 -0.0001 11 6 5.4123 -2.6542 -0.0001 12 6 5.8069 -4.1325 0.0004 13 8 5.3725 -4.7497 -1.2401 14 6 5.6434 -6.0548 -1.3989 15 8 6.2245 -6.6612 -0.5303 16 6 5.2237 -6.7634 -2.6609 17 1 4.1406 -6.7043 -2.7676 18 6 5.8918 -6.0979 -3.8658 19 6 6.7633 -7.1220 -4.5956 20 6 7.8382 -7.6484 -3.6426 21 6 7.1701 -8.3138 -2.4377 22 6 5.6502 -8.2309 -2.5878 23 6 5.2246 -8.9501 -3.8694 24 6 5.8918 -8.2850 -5.0737 25 1 -0.4850 0.8400 0.0004 26 1 3.8745 -0.6808 0.8905 27 1 3.8751 -0.6797 -0.8895 28 1 5.8151 -2.1707 0.8898 29 1 5.8150 -2.1706 -0.8901 30 1 5.3311 -4.6352 0.8424 31 1 6.8897 -4.2195 0.0898 32 1 6.5131 -5.2696 -3.5251 33 1 5.1261 -5.7229 -4.5447 34 1 7.2397 -6.6478 -5.4537 35 1 8.4593 -6.8199 -3.3020 36 1 8.4594 -8.3777 -4.1627 37 1 7.4737 -7.8014 -1.5249 38 1 7.4736 -9.3594 -2.3855 39 1 5.1745 -8.7052 -1.7294 40 1 5.5281 -9.9957 -3.8171 41 1 4.1414 -8.8915 -3.9764 42 1 5.1259 -7.9100 -5.7527 43 1 6.5125 -9.0144 -5.5940 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815251002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:33 Heat of formation + Delta-G solvation = -175.372351 kcal Electronic energy + Delta-G solvation = -22664.966578 eV Core-core repulsion = 19287.401902 eV Total energy + Delta-G solvation = -3377.564677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33425 -40.44970 -38.78137 -37.40996 -34.90624 -32.87526 -32.31113 -31.67637 -31.56329 -29.56369 -25.42485 -24.05104 -23.62792 -23.42481 -22.95539 -21.74173 -19.12221 -18.86217 -18.10983 -17.97259 -17.45303 -17.32639 -16.76171 -16.59926 -16.36561 -16.22804 -15.42623 -14.73597 -14.42175 -14.38216 -13.92011 -13.68856 -13.33136 -13.13941 -13.10933 -12.99601 -12.98205 -12.94951 -12.89530 -12.68965 -12.62557 -12.29218 -11.86285 -11.78373 -11.73662 -11.39029 -11.37461 -10.94487 -10.82181 -10.75162 -10.60208 -10.42076 -8.37981 -6.46756 1.15055 1.33998 1.37565 1.48253 1.66369 2.29466 2.92973 2.94824 3.39385 3.58175 3.64600 3.90165 3.93994 4.08551 4.15182 4.25678 4.31601 4.33534 4.35048 4.38125 4.46666 4.51086 4.53597 4.55889 4.59352 4.69549 4.69816 4.88224 4.98251 5.10366 5.11350 5.16694 5.29511 5.34068 5.37735 5.41353 5.44423 5.47916 5.51748 5.61846 5.89850 6.56914 6.67519 6.73390 7.17547 8.79336 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028215 B = 0.003253 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.125175 B = 8605.811477 C = 8903.421368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.242 1.242 7 C -0.550 4.550 8 H 0.027 0.973 9 C 0.179 3.821 10 O -0.408 6.408 11 C 0.051 3.949 12 C 0.073 3.927 13 O -0.359 6.359 14 C 0.462 3.538 15 O -0.529 6.529 16 C -0.077 4.077 17 H 0.111 0.889 18 C -0.104 4.104 19 C -0.085 4.085 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.068 4.068 23 C -0.110 4.110 24 C -0.112 4.112 25 H 0.274 0.726 26 H 0.018 0.982 27 H 0.015 0.985 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.410 -14.889 -10.310 25.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.165 1.165 7 C -0.588 4.588 8 H 0.045 0.955 9 C 0.103 3.897 10 O -0.328 6.328 11 C -0.025 4.025 12 C 0.000 4.000 13 O -0.276 6.276 14 C 0.307 3.693 15 O -0.419 6.419 16 C -0.096 4.096 17 H 0.129 0.871 18 C -0.141 4.141 19 C -0.103 4.103 20 C -0.151 4.151 21 C -0.164 4.164 22 C -0.087 4.087 23 C -0.147 4.147 24 C -0.149 4.149 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.302 -15.088 -10.025 25.751 hybrid contribution -0.192 0.883 0.650 1.113 sum 18.111 -14.205 -9.375 24.853 Atomic orbital electron populations 1.70035 1.08369 1.28876 1.50919 1.25886 0.95836 1.03553 0.93309 0.85568 0.79495 0.77139 0.79882 1.18274 1.19907 1.16520 1.21175 0.91085 0.93816 1.52679 0.95484 1.20365 0.93259 0.80585 0.95481 1.87922 1.20701 1.28764 1.95376 1.22743 0.82796 0.94449 1.02552 1.23204 1.00596 0.92060 0.84180 1.86608 1.73902 1.25469 1.41575 1.24381 0.75175 0.80299 0.89471 1.90553 1.39873 1.67013 1.44499 1.21265 1.03137 0.95482 0.89703 0.87102 1.21570 0.99790 0.97832 0.94943 1.21086 0.95610 0.95702 0.97900 1.21577 0.97448 1.00124 0.95975 1.21746 0.94208 1.01449 0.99007 1.20881 0.97010 0.91554 0.99237 1.21531 1.00746 0.99553 0.92901 1.21553 0.99118 0.97118 0.97141 0.91739 0.96401 0.96701 0.89194 0.91556 0.91628 0.87387 0.92135 0.89528 0.89309 0.93141 0.90385 0.92119 0.91137 0.91777 0.90388 0.91315 0.91007 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.58 13.96 21.45 0.30 -59.28 16 2 C 0.01 0.72 5.47 84.66 0.46 1.18 16 3 Si 0.96 42.89 27.47 68.60 1.88 44.77 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 7 C -0.55 -33.83 9.99 25.60 0.26 -33.57 16 8 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 9 C 0.18 8.93 4.76 71.23 0.34 9.27 16 10 O -0.41 -19.23 10.30 -145.57 -1.50 -20.73 16 11 C 0.05 1.69 6.33 71.98 0.46 2.15 16 12 C 0.07 2.23 5.85 71.98 0.42 2.65 16 13 O -0.36 -11.95 10.00 -48.79 -0.49 -12.44 16 14 C 0.46 13.78 6.69 71.23 0.48 14.25 16 15 O -0.53 -17.29 13.41 21.97 0.29 -17.00 16 16 C -0.08 -1.76 2.67 -11.54 -0.03 -1.79 16 17 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 18 C -0.10 -1.99 5.32 30.60 0.16 -1.83 16 19 C -0.08 -1.25 3.19 -10.80 -0.03 -1.29 16 20 C -0.11 -1.84 5.71 30.59 0.17 -1.67 16 21 C -0.13 -2.50 5.39 30.58 0.16 -2.33 16 22 C -0.07 -1.36 2.36 -10.81 -0.03 -1.38 16 23 C -0.11 -1.58 5.70 30.56 0.17 -1.41 16 24 C -0.11 -1.39 5.71 30.56 0.17 -1.21 16 25 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.02 0.85 7.20 -2.39 -0.02 0.84 16 27 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 28 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 31 H 0.11 2.61 8.13 -2.39 -0.02 2.59 16 32 H 0.06 1.29 7.49 -2.39 -0.02 1.27 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.06 1.53 5.52 -2.39 -0.01 1.52 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -73.42 337.23 4.58 -68.84 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.91 Total: 12.81 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 3.17 Total: -16.98 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.30 Total: -59.28 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -1.69 Total: -50.16 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.77 kcal Total: -73.42 4.58 -68.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815251002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.531 kcal (2) G-P(sol) polarization free energy of solvation -73.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds