Wall clock time and date at job start Tue Mar 31 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47005 * 269.99666 * 3 2 1 5 5 H 1.48500 * 109.47475 * 29.99848 * 3 2 1 6 6 H 1.48501 * 109.46963 * 150.00091 * 3 2 1 7 7 C 1.37872 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00370 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00179 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47579 * 180.02562 * 9 7 2 11 11 C 1.42893 * 114.00256 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47403 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47092 * 64.99995 * 12 11 10 14 14 C 1.34226 * 117.00166 * 180.02562 * 13 12 11 15 15 O 1.20825 * 119.99821 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00152 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.47081 * 59.99751 * 16 14 13 18 18 C 1.53005 * 109.46741 * 299.99842 * 16 14 13 19 19 C 1.52999 * 109.47159 * 239.99525 * 18 16 14 20 20 C 1.52997 * 109.47317 * 300.00546 * 19 18 16 21 21 C 1.53000 * 109.47060 * 59.99960 * 20 19 18 22 22 C 1.52998 * 109.47058 * 179.97438 * 16 14 13 23 23 C 1.52999 * 109.47086 * 60.00158 * 22 16 14 24 24 C 1.52997 * 109.47446 * 59.99803 * 23 22 16 25 25 H 0.97005 * 119.99654 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46867 * 59.99508 * 9 7 2 27 27 H 1.09011 * 109.46940 * 300.00205 * 9 7 2 28 28 H 1.09007 * 109.46899 * 59.99912 * 11 10 9 29 29 H 1.08991 * 109.47587 * 300.00425 * 11 10 9 30 30 H 1.09002 * 109.46994 * 305.00661 * 12 11 10 31 31 H 1.09003 * 109.47505 * 185.00656 * 12 11 10 32 32 H 1.09002 * 109.46935 * 120.00114 * 18 16 14 33 33 H 1.09000 * 109.47360 * 0.02562 * 18 16 14 34 34 H 1.08996 * 109.46929 * 179.97438 * 19 18 16 35 35 H 1.09002 * 109.47153 * 299.99641 * 20 19 18 36 36 H 1.09001 * 109.46832 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47517 * 120.00106 * 21 20 19 38 38 H 1.09004 * 109.46796 * 240.00014 * 21 20 19 39 39 H 1.08993 * 109.46892 * 299.99669 * 22 16 14 40 40 H 1.09001 * 109.47218 * 179.97438 * 23 22 16 41 41 H 1.08994 * 109.47066 * 299.99818 * 23 22 16 42 42 H 1.09001 * 109.47375 * 120.00120 * 24 23 22 43 43 H 1.09000 * 109.47140 * 240.00137 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4124 -2.6542 0.0009 12 6 5.8070 -4.1324 0.0015 13 8 5.3727 -4.7497 -1.2390 14 6 5.6436 -6.0547 -1.3977 15 8 6.2239 -6.6613 -0.5287 16 6 5.2239 -6.7634 -2.6598 17 1 5.6999 -6.2893 -3.5181 18 6 3.7034 -6.6805 -2.8096 19 6 3.1158 -8.0929 -2.8362 20 6 3.7033 -8.8675 -4.0176 21 6 5.2237 -8.9504 -3.8677 22 6 5.6504 -8.2308 -2.5866 23 6 4.9827 -8.8966 -1.3818 24 6 3.4622 -8.8143 -1.5313 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8753 -0.6804 -0.8889 28 1 5.8152 -2.1707 0.8910 29 1 5.8152 -2.1706 -0.8889 30 1 5.3311 -4.6352 0.8435 31 1 6.8898 -4.2195 0.0911 32 1 3.4574 -6.1671 -3.7391 33 1 3.2849 -6.1282 -1.9681 34 1 2.0327 -8.0339 -2.9424 35 1 3.4573 -8.3542 -4.9471 36 1 3.2850 -9.8739 -4.0362 37 1 5.5273 -9.9960 -3.8154 38 1 5.6998 -8.4763 -4.7260 39 1 6.7336 -8.2894 -2.4801 40 1 5.2862 -9.9422 -1.3299 41 1 5.2862 -8.3841 -0.4690 42 1 3.0440 -9.8207 -1.5502 43 1 3.0437 -8.2627 -0.6895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815251005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:39 Heat of formation + Delta-G solvation = -156.067721 kcal Electronic energy + Delta-G solvation = -22810.429031 eV Core-core repulsion = 19433.701466 eV Total energy + Delta-G solvation = -3376.727565 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32142 -39.39284 -37.16345 -36.06532 -32.72040 -31.87436 -31.45759 -30.90755 -30.09976 -27.59654 -24.36922 -22.67032 -22.53372 -22.02351 -21.84833 -20.65176 -17.72414 -17.19600 -16.83977 -16.71595 -16.59624 -15.99542 -15.76128 -15.17467 -14.87078 -14.55010 -14.15838 -13.22184 -13.17604 -12.88473 -12.52274 -12.47894 -12.27801 -12.20596 -12.16303 -12.11741 -12.09137 -11.88607 -11.64453 -11.16513 -10.91327 -10.84519 -10.66122 -10.55329 -10.38572 -10.01186 -9.97013 -9.88712 -9.63490 -9.22106 -8.91851 -8.52064 -6.13469 -4.12828 2.30918 2.78646 3.23086 3.30133 3.30896 4.28035 4.33329 4.44011 4.46580 4.51445 4.89171 5.00321 5.09913 5.10363 5.13470 5.16160 5.17715 5.21587 5.24065 5.32201 5.37950 5.42161 5.50224 5.64934 5.69803 5.78284 5.86098 5.91305 5.94488 5.99795 6.12510 6.16970 6.20526 6.24914 6.30993 6.35034 6.54256 6.69357 6.95231 7.55902 7.88771 7.95422 8.62045 8.97792 9.45326 10.99526 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.003620 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.743136 B = 7733.990329 C = 8401.102618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.375 6.375 11 C 0.058 3.942 12 C 0.074 3.926 13 O -0.340 6.340 14 C 0.465 3.535 15 O -0.513 6.513 16 C -0.074 4.074 17 H 0.105 0.895 18 C -0.107 4.107 19 C -0.088 4.088 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.068 4.068 23 C -0.127 4.127 24 C -0.117 4.117 25 H 0.267 0.733 26 H 0.004 0.996 27 H 0.000 1.000 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.419 -16.573 -7.225 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.294 6.294 11 C -0.020 4.020 12 C 0.000 4.000 13 O -0.256 6.256 14 C 0.309 3.691 15 O -0.402 6.402 16 C -0.093 4.093 17 H 0.123 0.877 18 C -0.145 4.145 19 C -0.106 4.106 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.086 4.086 23 C -0.165 4.165 24 C -0.155 4.155 25 H 0.077 0.923 26 H 0.021 0.979 27 H 0.018 0.982 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.292 -16.744 -6.936 21.899 hybrid contribution 0.652 1.267 0.161 1.434 sum 12.944 -15.477 -6.775 21.284 Atomic orbital electron populations 1.69879 1.06056 1.27109 1.50254 1.24762 0.94809 0.98734 0.94609 0.86850 0.80324 0.83757 0.78801 1.19878 1.20751 1.19123 1.20875 0.88183 0.95374 1.51313 0.89928 1.20634 0.96328 0.79276 0.94442 1.87974 1.16658 1.29729 1.95074 1.22393 0.86109 0.92940 1.00550 1.23152 0.99018 0.93138 0.84706 1.86604 1.73514 1.24316 1.41175 1.23749 0.75476 0.80824 0.89076 1.90562 1.39212 1.66571 1.43836 1.21087 0.99013 0.95492 0.93688 0.87673 1.21562 0.91662 0.97182 1.04073 1.21082 0.99961 0.94464 0.95124 1.21568 0.95346 1.00238 0.98040 1.21543 0.96237 1.00365 0.96793 1.20862 1.00195 0.91700 0.95858 1.21799 0.94852 1.00546 0.99260 1.21603 0.96350 1.00242 0.97289 0.92333 0.97866 0.98194 0.91909 0.93086 0.90444 0.90421 0.90336 0.90250 0.90512 0.91782 0.91966 0.91587 0.91871 0.90584 0.92240 0.89434 0.92078 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -15.47 9.99 -34.44 -0.34 -15.81 16 8 H 0.08 2.70 8.06 -52.49 -0.42 2.27 16 9 C 0.17 4.26 4.76 36.01 0.17 4.43 16 10 O -0.38 -8.78 10.30 -38.80 -0.40 -9.18 16 11 C 0.06 1.00 6.33 37.16 0.24 1.23 16 12 C 0.07 1.14 5.84 37.16 0.22 1.36 16 13 O -0.34 -5.60 10.00 -42.01 -0.42 -6.02 16 14 C 0.47 6.81 6.69 36.01 0.24 7.05 16 15 O -0.51 -8.19 13.41 -18.75 -0.25 -8.44 16 16 C -0.07 -0.85 2.67 -91.77 -0.24 -1.09 16 17 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 18 C -0.11 -1.26 5.32 -26.73 -0.14 -1.40 16 19 C -0.09 -0.89 3.20 -90.58 -0.29 -1.18 16 20 C -0.11 -0.95 5.71 -26.73 -0.15 -1.11 16 21 C -0.11 -0.91 5.71 -26.73 -0.15 -1.07 16 22 C -0.07 -0.69 2.37 -90.62 -0.21 -0.91 16 23 C -0.13 -1.41 5.39 -26.73 -0.14 -1.56 16 24 C -0.12 -1.25 5.71 -26.69 -0.15 -1.41 16 25 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 27 H 0.00 0.01 7.57 -51.92 -0.39 -0.38 16 28 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.08 1.00 8.13 -51.93 -0.42 0.57 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.13 7.49 -51.93 -0.39 0.74 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.18 5.52 -51.93 -0.29 0.90 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -32.55 337.24 -8.32 -40.88 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.37 Total: -2.72 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.07 Total: -9.41 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -1.07 Total: -23.64 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.55 -8.32 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815251005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.190 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds