Wall clock time and date at job start Tue Mar 31 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47005 * 269.99666 * 3 2 1 5 5 H 1.48500 * 109.47475 * 29.99848 * 3 2 1 6 6 H 1.48501 * 109.46963 * 150.00091 * 3 2 1 7 7 C 1.37872 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00370 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00179 * 180.02562 * 7 2 1 10 10 O 1.42898 * 109.47579 * 180.02562 * 9 7 2 11 11 C 1.42893 * 114.00256 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47403 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47092 * 64.99995 * 12 11 10 14 14 C 1.34226 * 117.00166 * 180.02562 * 13 12 11 15 15 O 1.20825 * 119.99821 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00152 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.47081 * 59.99751 * 16 14 13 18 18 C 1.53005 * 109.46741 * 299.99842 * 16 14 13 19 19 C 1.52999 * 109.47159 * 239.99525 * 18 16 14 20 20 C 1.52997 * 109.47317 * 300.00546 * 19 18 16 21 21 C 1.53000 * 109.47060 * 59.99960 * 20 19 18 22 22 C 1.52998 * 109.47058 * 179.97438 * 16 14 13 23 23 C 1.52999 * 109.47086 * 60.00158 * 22 16 14 24 24 C 1.52997 * 109.47446 * 59.99803 * 23 22 16 25 25 H 0.97005 * 119.99654 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46867 * 59.99508 * 9 7 2 27 27 H 1.09011 * 109.46940 * 300.00205 * 9 7 2 28 28 H 1.09007 * 109.46899 * 59.99912 * 11 10 9 29 29 H 1.08991 * 109.47587 * 300.00425 * 11 10 9 30 30 H 1.09002 * 109.46994 * 305.00661 * 12 11 10 31 31 H 1.09003 * 109.47505 * 185.00656 * 12 11 10 32 32 H 1.09002 * 109.46935 * 120.00114 * 18 16 14 33 33 H 1.09000 * 109.47360 * 0.02562 * 18 16 14 34 34 H 1.08996 * 109.46929 * 179.97438 * 19 18 16 35 35 H 1.09002 * 109.47153 * 299.99641 * 20 19 18 36 36 H 1.09001 * 109.46832 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47517 * 120.00106 * 21 20 19 38 38 H 1.09004 * 109.46796 * 240.00014 * 21 20 19 39 39 H 1.08993 * 109.46892 * 299.99669 * 22 16 14 40 40 H 1.09001 * 109.47218 * 179.97438 * 23 22 16 41 41 H 1.08994 * 109.47066 * 299.99818 * 23 22 16 42 42 H 1.09001 * 109.47375 * 120.00120 * 24 23 22 43 43 H 1.09000 * 109.47140 * 240.00137 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4124 -2.6542 0.0009 12 6 5.8070 -4.1324 0.0015 13 8 5.3727 -4.7497 -1.2390 14 6 5.6436 -6.0547 -1.3977 15 8 6.2239 -6.6613 -0.5287 16 6 5.2239 -6.7634 -2.6598 17 1 5.6999 -6.2893 -3.5181 18 6 3.7034 -6.6805 -2.8096 19 6 3.1158 -8.0929 -2.8362 20 6 3.7033 -8.8675 -4.0176 21 6 5.2237 -8.9504 -3.8677 22 6 5.6504 -8.2308 -2.5866 23 6 4.9827 -8.8966 -1.3818 24 6 3.4622 -8.8143 -1.5313 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8753 -0.6804 -0.8889 28 1 5.8152 -2.1707 0.8910 29 1 5.8152 -2.1706 -0.8889 30 1 5.3311 -4.6352 0.8435 31 1 6.8898 -4.2195 0.0911 32 1 3.4574 -6.1671 -3.7391 33 1 3.2849 -6.1282 -1.9681 34 1 2.0327 -8.0339 -2.9424 35 1 3.4573 -8.3542 -4.9471 36 1 3.2850 -9.8739 -4.0362 37 1 5.5273 -9.9960 -3.8154 38 1 5.6998 -8.4763 -4.7260 39 1 6.7336 -8.2894 -2.4801 40 1 5.2862 -9.9422 -1.3299 41 1 5.2862 -8.3841 -0.4690 42 1 3.0440 -9.8207 -1.5502 43 1 3.0437 -8.2627 -0.6895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815251005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:38 Heat of formation + Delta-G solvation = -175.357290 kcal Electronic energy + Delta-G solvation = -22811.265490 eV Core-core repulsion = 19433.701466 eV Total energy + Delta-G solvation = -3377.564023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.32637 -40.44814 -38.78135 -37.40601 -34.90615 -32.88018 -32.31202 -31.67955 -31.56240 -29.56332 -25.43472 -24.05672 -23.61777 -23.43293 -22.96644 -21.74113 -19.12445 -18.84712 -18.10176 -17.96125 -17.45765 -17.39394 -16.76105 -16.54380 -16.41912 -16.15533 -15.46232 -14.78877 -14.41723 -14.35234 -13.91412 -13.68266 -13.36679 -13.13769 -13.05454 -13.03037 -12.98849 -12.95599 -12.90271 -12.70702 -12.61073 -12.30571 -11.86608 -11.78552 -11.73400 -11.41457 -11.35085 -10.94695 -10.82986 -10.75508 -10.61543 -10.41994 -8.38033 -6.46786 1.15075 1.33791 1.37315 1.47976 1.67774 2.29307 2.93057 2.94843 3.39584 3.58019 3.63725 3.90169 3.93710 4.08302 4.15223 4.23459 4.30618 4.32084 4.36251 4.37272 4.46447 4.49428 4.53903 4.55219 4.58920 4.69072 4.69271 4.87354 4.97965 5.08456 5.11813 5.15714 5.28211 5.33678 5.36858 5.41215 5.44902 5.48470 5.50573 5.61419 5.89849 6.56818 6.67627 6.73813 7.17570 8.79285 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.003620 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.743136 B = 7733.990329 C = 8401.102618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.242 1.242 7 C -0.549 4.549 8 H 0.026 0.974 9 C 0.179 3.821 10 O -0.408 6.408 11 C 0.051 3.949 12 C 0.073 3.927 13 O -0.360 6.360 14 C 0.460 3.540 15 O -0.529 6.529 16 C -0.072 4.072 17 H 0.128 0.872 18 C -0.107 4.107 19 C -0.088 4.088 20 C -0.110 4.110 21 C -0.106 4.106 22 C -0.065 4.065 23 C -0.127 4.127 24 C -0.118 4.118 25 H 0.273 0.727 26 H 0.018 0.982 27 H 0.015 0.985 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.768 -16.151 -8.656 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.165 1.165 7 C -0.587 4.587 8 H 0.045 0.955 9 C 0.103 3.897 10 O -0.328 6.328 11 C -0.026 4.026 12 C 0.000 4.000 13 O -0.276 6.276 14 C 0.305 3.695 15 O -0.419 6.419 16 C -0.091 4.091 17 H 0.146 0.854 18 C -0.145 4.145 19 C -0.107 4.107 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.084 4.084 23 C -0.165 4.165 24 C -0.155 4.155 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.656 -16.351 -8.367 23.498 hybrid contribution -0.139 1.025 0.659 1.226 sum 14.517 -15.326 -7.708 22.473 Atomic orbital electron populations 1.70042 1.08361 1.28854 1.50935 1.25873 0.95820 1.03507 0.93296 0.85577 0.79499 0.77183 0.79881 1.18277 1.19890 1.16546 1.21165 0.91064 0.93802 1.52671 0.95519 1.20366 0.93275 0.80585 0.95457 1.87923 1.20709 1.28757 1.95374 1.22747 0.82798 0.94463 1.02566 1.23202 1.00662 0.92028 0.84146 1.86603 1.74060 1.25442 1.41512 1.24431 0.74897 0.80200 0.89927 1.90553 1.40099 1.66602 1.44665 1.21268 0.98704 0.96322 0.92763 0.85422 1.21551 0.91967 0.98053 1.02927 1.21100 1.00051 0.93651 0.95849 1.21559 0.95450 1.00593 0.97135 1.21546 0.96003 1.01008 0.95825 1.20898 1.00112 0.90727 0.96648 1.21761 0.95000 1.01174 0.98531 1.21605 0.96277 1.00852 0.96806 0.91751 0.96424 0.96727 0.89217 0.91502 0.91853 0.87206 0.89290 0.93971 0.90581 0.90751 0.90713 0.90179 0.90302 0.90476 0.90713 0.92446 0.90410 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 2 C 0.01 0.77 5.47 84.65 0.46 1.23 16 3 Si 0.96 42.94 27.47 68.60 1.88 44.82 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 7 C -0.55 -33.83 9.99 25.60 0.26 -33.57 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 9 C 0.18 8.95 4.76 71.24 0.34 9.29 16 10 O -0.41 -19.29 10.30 -145.57 -1.50 -20.79 16 11 C 0.05 1.69 6.33 71.98 0.46 2.14 16 12 C 0.07 2.24 5.84 71.98 0.42 2.66 16 13 O -0.36 -11.99 10.00 -48.74 -0.49 -12.48 16 14 C 0.46 13.66 6.69 71.24 0.48 14.14 16 15 O -0.53 -17.19 13.41 21.97 0.29 -16.90 16 16 C -0.07 -1.60 2.67 -11.54 -0.03 -1.63 16 17 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 18 C -0.11 -2.55 5.32 30.60 0.16 -2.39 16 19 C -0.09 -1.75 3.20 -10.77 -0.03 -1.78 16 20 C -0.11 -1.55 5.71 30.59 0.17 -1.38 16 21 C -0.11 -1.41 5.71 30.59 0.17 -1.24 16 22 C -0.07 -1.24 2.37 -10.79 -0.03 -1.27 16 23 C -0.13 -2.78 5.39 30.59 0.16 -2.62 16 24 C -0.12 -2.54 5.71 30.62 0.17 -2.37 16 25 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 26 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 27 H 0.02 0.70 7.57 -2.38 -0.02 0.68 16 28 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 31 H 0.11 2.64 8.13 -2.39 -0.02 2.62 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.04 1.30 7.49 -2.39 -0.02 1.28 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.61 5.52 -2.39 -0.01 1.60 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -73.95 337.24 4.58 -69.37 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.91 Total: 14.06 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 3.17 Total: -18.79 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.30 Total: -59.29 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -1.69 Total: -50.17 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.88 Total: 44.82 kcal Total: -73.95 4.58 -69.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815251005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.986 kcal (2) G-P(sol) polarization free energy of solvation -73.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds