Wall clock time and date at job start Tue Mar 31 2020 05:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47308 * 32.16369 * 3 2 1 5 5 H 1.09000 * 109.47117 * 304.99698 * 4 3 2 6 6 N 1.46896 * 109.47252 * 64.99905 * 4 3 2 7 7 C 1.46900 * 111.00228 * 275.00348 * 6 4 3 8 8 C 1.53000 * 109.47271 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.47078 * 304.99566 * 8 7 6 10 10 C 1.47197 * 109.47162 * 64.99679 * 8 7 6 11 11 N 6.26339 * 103.05042 * 60.24139 * 2 1 3 12 12 C 1.53000 * 109.46864 * 184.99777 * 8 7 6 13 13 C 1.50699 * 109.46901 * 174.99814 * 12 8 7 14 14 H 1.08001 * 120.00129 * 359.97438 * 13 12 8 15 15 C 1.37880 * 119.99773 * 179.97438 * 13 12 8 16 16 N 1.31508 * 120.00071 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99819 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47197 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47145 * 119.99736 * 17 15 13 20 20 H 1.48501 * 109.47354 * 240.00125 * 17 15 13 21 21 C 1.50703 * 109.46987 * 185.00344 * 4 3 2 22 22 C 1.38235 * 120.00292 * 99.99885 * 21 4 3 23 23 C 1.38230 * 119.99899 * 179.97438 * 22 21 4 24 24 C 1.38235 * 120.00326 * 359.95697 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99503 * 279.97178 * 21 4 3 27 27 H 4.44649 * 5.63295 * 180.02562 * 4 1 2 28 28 H 1.09007 * 109.47110 * 272.16151 * 3 2 1 29 29 H 1.08998 * 109.47333 * 152.16609 * 3 2 1 30 30 H 1.00898 * 110.99990 * 38.95536 * 6 4 3 31 31 H 1.09004 * 109.46565 * 300.00090 * 7 6 4 32 32 H 1.09001 * 109.47168 * 59.99547 * 7 6 4 33 33 H 1.08999 * 109.47382 * 295.00051 * 12 8 7 34 34 H 1.08995 * 109.47138 * 54.99820 * 12 8 7 35 35 H 0.97003 * 120.00274 * 180.02562 * 16 15 13 36 36 H 1.08001 * 119.99730 * 359.97438 * 22 21 4 37 37 H 1.08000 * 120.00376 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 39 39 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 40 40 H 1.07997 * 120.00455 * 0.02562 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2202 -0.7679 5 1 2.7224 -2.1249 -0.3422 6 7 2.7679 -1.1082 -2.1801 7 6 1.4080 -1.6209 -2.3942 8 6 1.0400 -1.4884 -3.8733 9 1 1.1686 -0.4529 -4.1884 10 6 1.9149 -2.3580 -4.6764 11 7 2.5883 -3.0285 -5.2970 12 6 -0.4181 -1.9056 -4.0753 13 6 -0.8172 -1.6593 -5.5075 14 1 -0.1026 -1.2461 -6.2038 15 6 -2.0948 -1.9614 -5.9288 16 7 -2.9652 -2.4641 -5.0807 17 14 -2.5898 -1.6554 -7.7038 18 1 -1.4370 -1.0882 -8.4484 19 1 -3.0012 -2.9371 -8.3310 20 1 -3.7245 -0.6983 -7.7434 21 6 4.6585 -1.2870 -0.6639 22 6 5.2511 -2.1445 0.2440 23 6 6.6288 -2.2061 0.3390 24 6 7.4139 -1.4108 -0.4746 25 6 6.8214 -0.5543 -1.3835 26 6 5.4436 -0.4910 -1.4769 27 1 -1.0498 -0.0002 -0.0003 28 1 3.0093 -0.0379 1.0270 29 1 3.0089 0.9096 -0.4798 30 1 2.8503 -0.1560 -2.5034 31 1 1.3653 -2.6702 -2.1020 32 1 0.7042 -1.0470 -1.7913 33 1 -0.5282 -2.9652 -3.8445 34 1 -1.0581 -1.3215 -3.4141 35 1 -3.8640 -2.6771 -5.3772 36 1 4.6377 -2.7664 0.8792 37 1 7.0918 -2.8757 1.0486 38 1 8.4902 -1.4556 -0.3974 39 1 7.4347 0.0674 -2.0189 40 1 4.9806 0.1789 -2.1863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819192047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:59 Heat of formation + Delta-G solvation = 93.853128 kcal Electronic energy + Delta-G solvation = -20721.244671 eV Core-core repulsion = 17694.956159 eV Total energy + Delta-G solvation = -3026.288513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.70668 -37.69063 -36.00764 -33.83203 -32.98931 -32.35054 -30.98949 -30.43802 -28.77212 -26.28603 -24.09124 -23.05704 -22.16996 -21.74090 -20.64370 -18.25507 -17.18585 -16.67698 -16.40341 -15.61834 -15.39971 -14.91877 -14.57879 -14.38865 -14.20852 -13.82338 -13.41859 -13.22678 -13.16434 -12.64043 -12.55710 -12.29853 -11.95362 -11.86762 -11.60362 -11.33818 -11.09209 -11.02967 -10.98910 -10.68509 -10.53751 -10.41461 -10.22731 -10.14549 -9.53824 -9.20753 -8.95983 -8.77957 -8.45649 -8.14857 -6.09353 -4.12094 1.28623 1.36711 2.81828 2.86151 3.28435 3.36780 3.41605 3.71121 3.79687 3.88514 4.18034 4.35539 4.43677 4.80681 4.84279 4.92622 4.96992 5.04622 5.09109 5.13392 5.28989 5.40898 5.47989 5.58661 5.60063 5.71351 5.82332 5.90507 5.99379 6.03618 6.19143 6.38699 6.41439 6.46047 6.49366 6.59510 6.93878 7.10490 7.42744 7.46064 7.54806 7.63413 7.86390 8.24152 8.62938 8.92914 9.53308 11.01581 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021779 B = 0.003755 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.318029 B = 7454.663907 C = 8304.116750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.200 4.200 3 C -0.034 4.034 4 C 0.132 3.868 5 H 0.091 0.909 6 N -0.680 5.680 7 C 0.052 3.948 8 C 0.010 3.990 9 H 0.097 0.903 10 C 0.255 3.745 11 N -0.479 5.479 12 C 0.033 3.967 13 C -0.524 4.524 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.065 4.065 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.095 4.095 27 H 0.219 0.781 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.341 0.659 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.005 6.423 14.889 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.200 4.200 3 C -0.072 4.072 4 C 0.022 3.978 5 H 0.109 0.891 6 N -0.310 5.310 7 C -0.077 4.077 8 C -0.012 4.012 9 H 0.115 0.885 10 C -0.062 4.062 11 N -0.156 5.156 12 C -0.006 4.006 13 C -0.563 4.563 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.066 4.066 22 C -0.133 4.133 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.140 4.140 26 C -0.113 4.113 27 H 0.236 0.764 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.159 0.841 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.145 4.752 13.764 21.009 hybrid contribution -1.371 1.018 -0.444 1.764 sum 13.774 5.771 13.320 20.011 Atomic orbital electron populations 1.25018 0.96069 0.99428 0.99615 1.22790 0.94278 1.01660 1.01310 1.19437 0.85401 0.99855 1.02555 1.20413 0.91011 0.97557 0.88862 0.89095 1.60651 1.26883 1.27242 1.16254 1.22446 0.88399 1.01260 0.95626 1.19207 0.95516 0.96551 0.89890 0.88526 1.28849 0.91659 0.93230 0.92485 1.80932 1.12723 1.11034 1.10937 1.19145 0.85701 0.97792 0.97914 1.21190 0.97117 1.42812 0.95149 0.92477 1.24948 0.96585 0.94912 0.97530 1.69945 1.05169 1.43424 1.34510 0.86549 0.78563 0.77985 0.85070 1.19668 1.20972 1.20873 1.19723 0.94503 0.96358 0.95970 1.21007 0.94866 0.98674 0.98768 1.21067 0.93763 0.99538 0.99697 1.21114 0.99609 0.96987 0.96689 1.21149 0.94978 0.99207 0.98711 1.20954 0.93322 0.98962 0.98078 0.76399 0.89230 0.89371 0.84055 0.90801 0.91466 0.95649 0.94501 0.92889 0.86211 0.86339 0.86492 0.86295 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 17.65 29.55 0.52 -1.63 16 2 C -0.20 -2.31 11.24 -37.12 -0.42 -2.73 16 3 C -0.03 -0.33 5.15 -29.52 -0.15 -0.48 16 4 C 0.13 1.45 2.42 -68.86 -0.17 1.28 16 5 H 0.09 1.05 7.66 -51.93 -0.40 0.66 16 6 N -0.68 -8.82 5.37 -107.95 -0.58 -9.40 16 7 C 0.05 0.79 4.62 -3.82 -0.02 0.77 16 8 C 0.01 0.19 2.35 -93.41 -0.22 -0.03 16 9 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 10 C 0.25 5.44 13.67 -20.80 -0.28 5.16 16 11 N -0.48 -11.17 18.53 42.11 0.78 -10.39 16 12 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 13 C -0.52 -14.03 8.60 -34.44 -0.30 -14.33 16 14 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 17 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.06 -0.71 4.96 -104.62 -0.52 -1.23 16 22 C -0.11 -1.17 9.67 -39.59 -0.38 -1.56 16 23 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 24 C -0.13 -1.20 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 26 C -0.09 -1.02 9.32 -39.58 -0.37 -1.39 16 27 H 0.22 2.10 7.80 -54.10 -0.42 1.68 16 28 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.09 0.76 8.04 -51.93 -0.42 0.35 16 30 H 0.34 3.98 7.76 -39.29 -0.30 3.67 16 31 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 32 H 0.07 0.97 4.13 -51.93 -0.21 0.76 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 36 H 0.12 1.05 8.04 -52.49 -0.42 0.62 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.22 7.25 -52.49 -0.38 0.84 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -31.44 349.08 -8.01 -39.45 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.47 Total: 2.17 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -3.72 Total: -18.68 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.94 Total: -44.56 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.44 -8.01 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819192047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.305 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds