Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47308 * 32.16369 * 3 2 1 5 5 H 1.09000 * 109.47117 * 304.99698 * 4 3 2 6 6 N 1.46896 * 109.47252 * 64.99905 * 4 3 2 7 7 C 1.46900 * 111.00228 * 275.00348 * 6 4 3 8 8 C 1.53000 * 109.47271 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.47078 * 304.99566 * 8 7 6 10 10 C 1.47197 * 109.47162 * 64.99679 * 8 7 6 11 11 N 6.26339 * 103.05042 * 60.24139 * 2 1 3 12 12 C 1.53000 * 109.46864 * 184.99777 * 8 7 6 13 13 C 1.50699 * 109.46901 * 174.99814 * 12 8 7 14 14 H 1.08001 * 120.00129 * 359.97438 * 13 12 8 15 15 C 1.37880 * 119.99773 * 179.97438 * 13 12 8 16 16 N 1.31508 * 120.00071 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99819 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47197 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47145 * 119.99736 * 17 15 13 20 20 H 1.48501 * 109.47354 * 240.00125 * 17 15 13 21 21 C 1.50703 * 109.46987 * 185.00344 * 4 3 2 22 22 C 1.38235 * 120.00292 * 99.99885 * 21 4 3 23 23 C 1.38230 * 119.99899 * 179.97438 * 22 21 4 24 24 C 1.38235 * 120.00326 * 359.95697 * 23 22 21 25 25 C 1.38234 * 119.99814 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99503 * 279.97178 * 21 4 3 27 27 H 4.44649 * 5.63295 * 180.02562 * 4 1 2 28 28 H 1.09007 * 109.47110 * 272.16151 * 3 2 1 29 29 H 1.08998 * 109.47333 * 152.16609 * 3 2 1 30 30 H 1.00898 * 110.99990 * 38.95536 * 6 4 3 31 31 H 1.09004 * 109.46565 * 300.00090 * 7 6 4 32 32 H 1.09001 * 109.47168 * 59.99547 * 7 6 4 33 33 H 1.08999 * 109.47382 * 295.00051 * 12 8 7 34 34 H 1.08995 * 109.47138 * 54.99820 * 12 8 7 35 35 H 0.97003 * 120.00274 * 180.02562 * 16 15 13 36 36 H 1.08001 * 119.99730 * 359.97438 * 22 21 4 37 37 H 1.08000 * 120.00376 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.00616 * 179.72578 * 24 23 22 39 39 H 1.08001 * 120.00299 * 179.97438 * 25 24 23 40 40 H 1.07997 * 120.00455 * 0.02562 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2202 -0.7679 5 1 2.7224 -2.1249 -0.3422 6 7 2.7679 -1.1082 -2.1801 7 6 1.4080 -1.6209 -2.3942 8 6 1.0400 -1.4884 -3.8733 9 1 1.1686 -0.4529 -4.1884 10 6 1.9149 -2.3580 -4.6764 11 7 2.5883 -3.0285 -5.2970 12 6 -0.4181 -1.9056 -4.0753 13 6 -0.8172 -1.6593 -5.5075 14 1 -0.1026 -1.2461 -6.2038 15 6 -2.0948 -1.9614 -5.9288 16 7 -2.9652 -2.4641 -5.0807 17 14 -2.5898 -1.6554 -7.7038 18 1 -1.4370 -1.0882 -8.4484 19 1 -3.0012 -2.9371 -8.3310 20 1 -3.7245 -0.6983 -7.7434 21 6 4.6585 -1.2870 -0.6639 22 6 5.2511 -2.1445 0.2440 23 6 6.6288 -2.2061 0.3390 24 6 7.4139 -1.4108 -0.4746 25 6 6.8214 -0.5543 -1.3835 26 6 5.4436 -0.4910 -1.4769 27 1 -1.0498 -0.0002 -0.0003 28 1 3.0093 -0.0379 1.0270 29 1 3.0089 0.9096 -0.4798 30 1 2.8503 -0.1560 -2.5034 31 1 1.3653 -2.6702 -2.1020 32 1 0.7042 -1.0470 -1.7913 33 1 -0.5282 -2.9652 -3.8445 34 1 -1.0581 -1.3215 -3.4141 35 1 -3.8640 -2.6771 -5.3772 36 1 4.6377 -2.7664 0.8792 37 1 7.0918 -2.8757 1.0486 38 1 8.4902 -1.4556 -0.3974 39 1 7.4347 0.0674 -2.0189 40 1 4.9806 0.1789 -2.1863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819192047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = 77.375622 kcal Electronic energy + Delta-G solvation = -20721.959190 eV Core-core repulsion = 17694.956159 eV Total energy + Delta-G solvation = -3027.003031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.52644 -38.87257 -37.41194 -35.60554 -34.31954 -33.59783 -31.87470 -31.56607 -29.72016 -27.95106 -25.14274 -24.19509 -23.57449 -23.03589 -21.48441 -19.19629 -18.53458 -18.28908 -17.64901 -16.72790 -16.43371 -16.21249 -15.92186 -15.42153 -15.20472 -14.83295 -14.68532 -14.38221 -14.21754 -14.11688 -13.74852 -13.62513 -13.42918 -13.17941 -13.04023 -12.86903 -12.67289 -12.50497 -12.39184 -11.95645 -11.83102 -11.74455 -11.42246 -11.37551 -11.12321 -10.97924 -10.55829 -9.70719 -9.56566 -9.16238 -8.19598 -6.27699 0.52890 0.62012 1.38631 1.41924 1.52271 1.92851 1.98106 2.07670 2.14678 2.41327 2.93308 3.15544 3.21153 3.36457 3.51188 4.02744 4.06321 4.16333 4.24536 4.30136 4.35297 4.39040 4.42658 4.68211 4.75076 4.76038 4.82552 4.88201 4.98079 5.02316 5.17215 5.26795 5.29505 5.46607 5.61136 5.65332 5.72512 5.74513 5.79393 6.04996 6.20654 6.23245 6.48190 6.75837 6.83082 6.93448 7.40829 8.91488 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021779 B = 0.003755 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.318029 B = 7454.663907 C = 8304.116750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.209 4.209 3 C -0.029 4.029 4 C 0.139 3.861 5 H 0.083 0.917 6 N -0.686 5.686 7 C 0.067 3.933 8 C 0.021 3.979 9 H 0.118 0.882 10 C 0.265 3.735 11 N -0.514 5.514 12 C 0.040 3.960 13 C -0.538 4.538 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.922 5.922 17 Si 0.948 3.052 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.076 4.076 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.133 4.133 26 C -0.109 4.109 27 H 0.230 0.770 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.350 0.650 31 H 0.062 0.938 32 H 0.078 0.922 33 H -0.002 1.002 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.063 7.393 15.297 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.209 4.209 3 C -0.067 4.067 4 C 0.029 3.971 5 H 0.101 0.899 6 N -0.317 5.317 7 C -0.063 4.063 8 C -0.001 4.001 9 H 0.135 0.865 10 C -0.051 4.051 11 N -0.192 5.192 12 C 0.002 3.998 13 C -0.576 4.576 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.774 3.226 18 H -0.194 1.194 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.077 4.077 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.151 4.151 26 C -0.127 4.127 27 H 0.247 0.753 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.170 0.830 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.016 0.984 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 16.215 5.737 14.178 22.290 hybrid contribution -1.652 0.701 -0.533 1.872 sum 14.563 6.438 13.645 20.969 Atomic orbital electron populations 1.25523 0.96877 0.99646 0.99917 1.23279 0.95032 1.01493 1.01090 1.19461 0.84229 0.99617 1.03371 1.20334 0.91301 0.97884 0.87579 0.89889 1.60563 1.25134 1.27989 1.18062 1.22199 0.90090 1.01008 0.92959 1.19176 0.92214 0.96805 0.91913 0.86472 1.29335 0.91220 0.92709 0.91807 1.80929 1.13959 1.12122 1.12178 1.18957 0.88604 0.96049 0.96222 1.21570 0.97097 1.42228 0.96696 0.92831 1.25702 0.96871 0.94954 1.01173 1.70035 1.05550 1.44463 1.36187 0.85649 0.78459 0.77828 0.80673 1.19396 1.21182 1.19706 1.19740 0.94199 0.97057 0.96672 1.21236 0.95557 0.98749 0.98947 1.21372 0.93619 0.99712 0.99978 1.21437 1.00828 0.96501 0.96230 1.21418 0.94974 0.99591 0.99119 1.21106 0.93886 0.99348 0.98389 0.75313 0.87712 0.88105 0.83047 0.91965 0.90473 0.98385 0.94626 0.92721 0.85188 0.84385 0.84485 0.84861 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.53 17.65 74.32 1.31 -3.22 16 2 C -0.21 -4.54 11.24 31.12 0.35 -4.19 16 3 C -0.03 -0.50 5.15 28.79 0.15 -0.35 16 4 C 0.14 2.87 2.42 44.17 0.11 2.97 16 5 H 0.08 1.85 7.66 -2.39 -0.02 1.83 16 6 N -0.69 -16.92 5.37 -495.45 -2.66 -19.59 16 7 C 0.07 1.98 4.62 86.30 0.40 2.38 16 8 C 0.02 0.76 2.35 -12.60 -0.03 0.73 16 9 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 10 C 0.27 11.24 13.67 89.45 1.22 12.47 16 11 N -0.51 -23.88 18.53 19.99 0.37 -23.51 16 12 C 0.04 1.89 4.42 29.85 0.13 2.02 16 13 C -0.54 -28.69 8.60 25.60 0.22 -28.47 16 14 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 15 C 0.01 0.66 5.46 84.66 0.46 1.12 16 16 N -0.92 -52.97 13.29 21.45 0.28 -52.69 16 17 Si 0.95 43.60 29.54 68.60 2.03 45.62 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 C -0.08 -1.56 4.96 -19.87 -0.10 -1.66 16 22 C -0.13 -2.40 9.67 22.27 0.22 -2.19 16 23 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 25 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 26 C -0.11 -2.20 9.32 22.27 0.21 -1.99 16 27 H 0.23 4.25 7.80 -4.43 -0.03 4.22 16 28 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.10 1.52 8.04 -2.39 -0.02 1.50 16 30 H 0.35 7.55 7.76 -89.70 -0.70 6.85 16 31 H 0.06 1.99 8.05 -2.38 -0.02 1.97 16 32 H 0.08 2.15 4.13 -2.39 -0.01 2.14 16 33 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.13 2.09 8.04 -2.91 -0.02 2.07 16 37 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.13 2.34 7.25 -2.91 -0.02 2.32 16 Total: -1.00 -66.13 349.08 5.68 -60.45 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.34 Total: 16.31 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 5.32 Total: -26.59 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -2.01 Total: -95.79 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -66.13 5.68 -60.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819192047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.829 kcal (2) G-P(sol) polarization free energy of solvation -66.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds