Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46753 * 205.48339 * 3 2 1 5 5 H 1.08999 * 109.47033 * 304.99944 * 4 3 2 6 6 N 1.46898 * 109.47576 * 65.00217 * 4 3 2 7 7 C 1.46898 * 110.99934 * 275.00118 * 6 4 3 8 8 C 1.52997 * 109.47390 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.46881 * 54.99442 * 8 7 6 10 10 C 1.47201 * 109.47013 * 295.00280 * 8 7 6 11 11 N 4.64269 * 87.05186 * 276.24336 * 2 1 3 12 12 C 1.52997 * 109.47504 * 174.99803 * 8 7 6 13 13 C 1.50701 * 109.47212 * 184.99949 * 12 8 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 8 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 8 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.50706 * 109.47030 * 185.00210 * 4 3 2 22 22 C 1.38235 * 119.99943 * 279.72716 * 21 4 3 23 23 C 1.38234 * 120.00041 * 179.78502 * 22 21 4 24 24 C 1.38230 * 119.99862 * 0.44096 * 23 22 21 25 25 C 1.38237 * 120.00293 * 359.81321 * 24 23 22 26 26 C 1.38231 * 120.00142 * 99.99829 * 21 4 3 27 27 H 4.44641 * 5.63324 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.47214 * 85.48538 * 3 2 1 29 29 H 1.08996 * 109.47315 * 325.48082 * 3 2 1 30 30 H 1.00902 * 110.99755 * 38.95021 * 6 4 3 31 31 H 1.09003 * 109.47230 * 59.99766 * 7 6 4 32 32 H 1.08998 * 109.46947 * 299.99824 * 7 6 4 33 33 H 1.09002 * 109.47153 * 64.99951 * 12 8 7 34 34 H 1.09001 * 109.46832 * 305.00142 * 12 8 7 35 35 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 36 36 H 1.08001 * 119.99640 * 0.02562 * 22 21 4 37 37 H 1.07995 * 119.99799 * 180.27121 * 23 22 21 38 38 H 1.08000 * 119.99874 * 179.82828 * 24 23 22 39 39 H 1.07992 * 120.00453 * 179.97438 * 25 24 23 40 40 H 1.08004 * 120.00134 * 359.97438 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.3031 0.6206 5 1 2.7204 2.1516 0.0926 6 7 2.7668 1.3558 2.0363 7 6 1.4065 1.8886 2.1893 8 6 1.0379 1.9276 3.6737 9 1 1.7911 2.4952 4.2203 10 6 0.9800 0.5545 4.2011 11 7 0.9353 -0.5042 4.6090 12 6 -0.3274 2.5970 3.8429 13 6 -0.6353 2.7463 5.3106 14 1 0.0722 2.3989 6.0488 15 6 -1.8199 3.3274 5.7108 16 7 -2.6812 3.7509 4.8118 17 14 -2.2012 3.5131 7.5300 18 1 -1.1561 4.3504 8.1719 19 1 -3.5264 4.1627 7.6942 20 1 -2.2245 2.1733 8.1702 21 6 4.6573 1.3587 0.5096 22 6 5.4432 0.6676 1.4127 23 6 6.8208 0.7151 1.3082 24 6 7.4126 1.4610 0.3061 25 6 6.6268 2.1564 -0.5938 26 6 5.2492 2.1054 -0.4919 27 1 -1.0501 -0.0004 0.0000 28 1 3.0095 -0.0801 -1.0245 29 1 3.0098 -0.8459 0.5823 30 1 2.8501 0.4476 2.4682 31 1 0.7032 1.2477 1.6575 32 1 1.3627 2.8967 1.7771 33 1 -1.0943 1.9824 3.3715 34 1 -0.3105 3.5805 3.3733 35 1 -3.5148 4.1593 5.0934 36 1 4.9809 0.0875 2.1976 37 1 7.4347 0.1716 2.0112 38 1 8.4889 1.5003 0.2262 39 1 7.0892 2.7394 -1.3765 40 1 4.6352 2.6486 -1.1951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819192056.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = 93.664109 kcal Electronic energy + Delta-G solvation = -20747.574583 eV Core-core repulsion = 17721.277873 eV Total energy + Delta-G solvation = -3026.296709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.72299 -37.76060 -36.06017 -33.91766 -32.98169 -32.35322 -31.00205 -30.45372 -28.77949 -26.27810 -24.08856 -23.07996 -22.17127 -21.81752 -20.61611 -18.21134 -17.10274 -16.65428 -16.48421 -15.66854 -15.45234 -15.13164 -14.61579 -14.29488 -14.14613 -13.82897 -13.44647 -13.25616 -13.01535 -12.72602 -12.67428 -12.34463 -12.08331 -11.87030 -11.73625 -11.26994 -11.12254 -11.01407 -10.98118 -10.72872 -10.55407 -10.49005 -10.23389 -10.12750 -9.54186 -9.23697 -8.97271 -8.79622 -8.44355 -8.16524 -6.08755 -4.11744 1.27243 1.35429 2.81862 2.86723 3.31774 3.35731 3.39508 3.59204 3.63897 3.71450 4.17273 4.35558 4.43797 4.79420 4.81570 4.86403 4.92013 5.03858 5.08506 5.13736 5.29205 5.40235 5.47097 5.56515 5.58282 5.72300 5.82979 5.89733 5.98721 6.08614 6.19643 6.34797 6.41447 6.45098 6.55270 6.59449 6.92665 7.10204 7.39039 7.45303 7.54569 7.63776 7.86280 8.24331 8.41986 8.92489 9.53508 11.02106 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.003676 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.478367 B = 7614.571066 C = 8082.147349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.198 4.198 3 C -0.036 4.036 4 C 0.131 3.869 5 H 0.094 0.906 6 N -0.679 5.679 7 C 0.051 3.949 8 C 0.007 3.993 9 H 0.109 0.891 10 C 0.242 3.758 11 N -0.478 5.478 12 C 0.035 3.965 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.065 4.065 22 C -0.095 4.095 23 C -0.122 4.122 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.114 4.114 27 H 0.218 0.782 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.338 0.662 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.024 0.976 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.832 -3.473 -13.766 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.198 4.198 3 C -0.074 4.074 4 C 0.021 3.979 5 H 0.112 0.888 6 N -0.309 5.309 7 C -0.078 4.078 8 C -0.015 4.015 9 H 0.127 0.873 10 C -0.074 4.074 11 N -0.155 5.155 12 C -0.004 4.004 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.065 4.065 22 C -0.114 4.114 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.132 4.132 27 H 0.235 0.765 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.157 0.843 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.888 -4.367 -13.041 21.014 hybrid contribution -1.053 -0.170 0.685 1.268 sum 14.835 -4.537 -12.356 19.833 Atomic orbital electron populations 1.24994 0.96065 0.99486 0.99806 1.22792 0.94296 1.01518 1.01232 1.19451 0.85401 0.99464 1.03071 1.20434 0.91087 0.96561 0.89863 0.88802 1.60717 1.26720 1.31030 1.12397 1.22451 0.88171 1.01400 0.95781 1.19322 1.03876 0.84751 0.93574 0.87342 1.29304 0.91179 0.94599 0.92350 1.81003 1.10912 1.13659 1.09888 1.19131 0.87472 0.95928 0.97868 1.21116 1.03701 1.39966 0.91683 0.92592 1.24943 0.96134 0.95230 0.97607 1.69927 1.09527 1.40387 1.33217 0.86661 0.77565 0.78440 0.85455 1.19999 1.21191 1.20282 1.19712 0.94407 0.97094 0.95313 1.20963 0.93351 0.98918 0.98143 1.21144 0.94933 0.99519 0.98418 1.21116 0.99617 0.97872 0.95760 1.21071 0.93751 0.99835 0.99395 1.21006 0.94858 0.99065 0.98279 0.76487 0.89094 0.89585 0.84333 0.92678 0.89345 0.95806 0.94306 0.92767 0.86080 0.86293 0.86478 0.86305 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 17.64 29.55 0.52 -1.91 16 2 C -0.20 -2.56 11.25 -37.12 -0.42 -2.98 16 3 C -0.04 -0.38 5.16 -29.52 -0.15 -0.53 16 4 C 0.13 1.46 2.42 -68.86 -0.17 1.29 16 5 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 6 N -0.68 -9.00 5.66 -107.95 -0.61 -9.61 16 7 C 0.05 0.78 4.69 -3.83 -0.02 0.77 16 8 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 9 H 0.11 1.98 8.14 -51.93 -0.42 1.55 16 10 C 0.24 4.96 12.98 -20.78 -0.27 4.69 16 11 N -0.48 -10.47 18.53 42.13 0.78 -9.69 16 12 C 0.03 0.81 4.42 -27.88 -0.12 0.69 16 13 C -0.53 -14.14 8.60 -34.44 -0.30 -14.43 16 14 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.06 -0.69 4.96 -104.62 -0.52 -1.21 16 22 C -0.10 -1.02 9.33 -39.58 -0.37 -1.39 16 23 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 24 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 26 C -0.11 -1.10 9.67 -39.58 -0.38 -1.48 16 27 H 0.22 2.37 7.80 -54.09 -0.42 1.95 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.90 8.04 -51.93 -0.42 0.49 16 30 H 0.34 4.64 6.83 -39.29 -0.27 4.37 16 31 H 0.06 0.87 4.12 -51.93 -0.21 0.65 16 32 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 36 H 0.12 1.29 7.24 -52.49 -0.38 0.91 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.97 8.04 -52.48 -0.42 0.55 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -30.51 347.89 -8.01 -38.52 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.43 Total: 3.55 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -3.71 Total: -19.56 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.91 Total: -44.17 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.51 -8.01 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819192056.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.187 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds