Wall clock time and date at job start Tue Mar 31 2020 05:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46722 * 126.64028 * 3 2 1 5 5 H 1.08994 * 109.47474 * 54.99982 * 4 3 2 6 6 N 1.46907 * 109.47022 * 294.99578 * 4 3 2 7 7 C 1.46900 * 110.99641 * 85.00145 * 6 4 3 8 8 C 1.53002 * 109.46619 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.47070 * 55.00278 * 8 7 6 10 10 C 1.47194 * 109.47253 * 295.00217 * 8 7 6 11 11 N 6.26345 * 103.05017 * 98.55772 * 2 1 3 12 12 C 1.52997 * 109.46817 * 175.00098 * 8 7 6 13 13 C 1.50705 * 109.47390 * 184.99865 * 12 8 7 14 14 H 1.08000 * 119.99498 * 0.02562 * 13 12 8 15 15 C 1.37870 * 120.00441 * 180.02562 * 13 12 8 16 16 N 1.31513 * 119.99840 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00083 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47142 * 60.00110 * 17 15 13 19 19 H 1.48498 * 109.46868 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47038 * 299.99640 * 17 15 13 21 21 C 1.50703 * 109.46691 * 174.99954 * 4 3 2 22 22 C 1.38239 * 119.99985 * 79.72861 * 21 4 3 23 23 C 1.38237 * 119.99456 * 179.80858 * 22 21 4 24 24 C 1.38234 * 120.00097 * 0.39511 * 23 22 21 25 25 C 1.38230 * 120.00352 * 359.85097 * 24 23 22 26 26 C 1.38233 * 119.99665 * 259.99130 * 21 4 3 27 27 H 4.44649 * 5.63232 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.47257 * 6.63947 * 3 2 1 29 29 H 1.09001 * 109.47079 * 246.63750 * 3 2 1 30 30 H 1.00900 * 110.99873 * 208.95557 * 6 4 3 31 31 H 1.09000 * 109.47154 * 60.00280 * 7 6 4 32 32 H 1.08996 * 109.47574 * 299.99823 * 7 6 4 33 33 H 1.09001 * 109.47630 * 305.00128 * 12 8 7 34 34 H 1.09004 * 109.47346 * 65.00258 * 12 8 7 35 35 H 0.97002 * 119.99729 * 180.02562 * 16 15 13 36 36 H 1.07997 * 119.99690 * 359.97438 * 22 21 4 37 37 H 1.08002 * 119.99743 * 180.22477 * 23 22 21 38 38 H 1.08004 * 119.99642 * 179.84115 * 24 23 22 39 39 H 1.07993 * 120.00053 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.00420 * 359.97438 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1556 0.8618 -1.1575 5 1 2.7206 1.8587 -1.0877 6 7 2.7673 0.2462 -2.4336 7 6 1.4069 0.6457 -2.8182 8 6 1.0393 -0.0131 -4.1493 9 1 1.1689 -1.0924 -4.0686 10 6 1.9135 0.5079 -5.2127 11 7 2.5884 0.9080 -6.0337 12 6 -0.4192 0.3014 -4.4883 13 6 -0.8179 -0.4465 -5.7344 14 1 -0.1027 -1.0829 -6.2343 15 6 -2.0956 -0.3184 -6.2362 16 7 -2.9667 0.4562 -5.6272 17 14 -2.5900 -1.2460 -7.7804 18 1 -2.4395 -2.7054 -7.5507 19 1 -4.0055 -0.9406 -8.1095 20 1 -1.7183 -0.8298 -8.9083 21 6 4.6575 0.9629 -1.0850 22 6 5.4434 -0.0751 -1.5497 23 6 6.8211 0.0194 -1.4868 24 6 7.4127 1.1484 -0.9518 25 6 6.6268 2.1842 -0.4824 26 6 5.2491 2.0913 -0.5488 27 1 -1.0501 -0.0004 0.0002 28 1 3.0099 -1.0199 -0.1188 29 1 3.0092 0.4083 0.9434 30 1 3.4297 0.4722 -3.1604 31 1 1.3631 1.7295 -2.9254 32 1 0.7036 0.3279 -2.0486 33 1 -1.0588 -0.0047 -3.6605 34 1 -0.5303 1.3727 -4.6563 35 1 -3.8658 0.5460 -5.9800 36 1 4.9810 -0.9586 -1.9643 37 1 7.4351 -0.7900 -1.8532 38 1 8.4891 1.2211 -0.9003 39 1 7.0890 3.0659 -0.0640 40 1 4.6351 2.9006 -0.1822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819192059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:08 Heat of formation + Delta-G solvation = 93.342801 kcal Electronic energy + Delta-G solvation = -20724.777115 eV Core-core repulsion = 17698.466473 eV Total energy + Delta-G solvation = -3026.310642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.77434 -37.64886 -36.01442 -33.90005 -33.02851 -32.34587 -31.06131 -30.44707 -28.79428 -26.34215 -24.03575 -23.01565 -22.17327 -21.81334 -20.59365 -17.95846 -17.19639 -16.70528 -16.44678 -15.93922 -15.52774 -14.87505 -14.60156 -14.24111 -14.22531 -13.52578 -13.39748 -13.30575 -12.99143 -12.74313 -12.62629 -12.44728 -12.23082 -12.02725 -11.61664 -11.40759 -11.15162 -11.09998 -11.02775 -10.74008 -10.54653 -10.25586 -10.05045 -9.74903 -9.53527 -9.23378 -9.04931 -8.86925 -8.44289 -8.32932 -6.08432 -4.11463 1.16987 1.27294 2.97973 3.04562 3.31908 3.35880 3.39654 3.58415 3.63972 3.65549 4.17278 4.38361 4.42997 4.76788 4.79291 4.84095 4.87194 5.01859 5.20552 5.28470 5.29487 5.36347 5.47087 5.60291 5.65297 5.75380 5.82542 5.89848 5.96862 6.18012 6.27711 6.30913 6.35346 6.38551 6.49393 6.57641 6.85523 7.10260 7.42156 7.45947 7.54863 7.80442 7.86545 8.24524 8.41991 8.92719 9.53769 11.02441 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.003755 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.858043 B = 7454.186152 C = 8306.942968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.183 4.183 3 C 0.005 3.995 4 C 0.132 3.868 5 H 0.057 0.943 6 N -0.681 5.681 7 C 0.052 3.948 8 C 0.008 3.992 9 H 0.110 0.890 10 C 0.241 3.759 11 N -0.477 5.477 12 C 0.034 3.966 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.090 4.090 22 C -0.097 4.097 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.112 4.112 27 H 0.217 0.783 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.341 0.659 31 H 0.032 0.968 32 H 0.107 0.893 33 H 0.039 0.961 34 H 0.023 0.977 35 H 0.263 0.737 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.974 0.627 15.330 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.183 4.183 3 C -0.032 4.032 4 C 0.022 3.978 5 H 0.075 0.925 6 N -0.313 5.313 7 C -0.077 4.077 8 C -0.014 4.014 9 H 0.128 0.872 10 C -0.076 4.076 11 N -0.154 5.154 12 C -0.004 4.004 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.091 4.091 22 C -0.116 4.116 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.130 4.130 27 H 0.234 0.766 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.160 0.840 31 H 0.051 0.949 32 H 0.125 0.875 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.604 0.708 14.363 21.220 hybrid contribution -0.698 0.334 -0.994 1.260 sum 14.907 1.042 13.369 20.051 Atomic orbital electron populations 1.24961 0.96037 1.00361 1.00428 1.22802 0.94260 1.01045 1.00188 1.18732 0.85121 1.01811 0.97520 1.20364 0.89924 0.96539 0.90977 0.92490 1.60689 1.04379 1.62062 1.04188 1.22525 0.90273 0.97570 0.97326 1.19327 0.95420 1.00761 0.85918 0.87240 1.29352 0.91978 0.92351 0.93910 1.81012 1.13025 1.10658 1.10719 1.19136 0.85700 0.97861 0.97731 1.21112 0.97147 1.27964 1.10211 0.92585 1.24942 0.96552 0.95251 0.97171 1.69930 1.05175 1.37968 1.39983 0.86659 0.77475 0.80424 0.83558 1.20007 1.21195 1.20274 1.19918 0.94772 0.94705 0.99684 1.21163 0.93300 0.98834 0.98270 1.21205 0.95012 0.98123 0.99703 1.21169 0.99739 0.94114 0.98967 1.21096 0.93714 0.98863 1.00459 1.21068 0.94959 0.97470 0.99547 0.76589 0.88720 0.89711 0.84032 0.94946 0.87529 0.94244 0.95855 0.92768 0.84816 0.86052 0.86327 0.86198 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.52 17.65 29.55 0.52 -2.00 16 2 C -0.18 -2.31 11.24 -37.12 -0.42 -2.72 16 3 C 0.01 0.06 5.37 -29.52 -0.16 -0.10 16 4 C 0.13 1.51 2.45 -68.86 -0.17 1.34 16 5 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 6 N -0.68 -9.16 5.66 -107.95 -0.61 -9.77 16 7 C 0.05 0.82 4.69 -3.82 -0.02 0.80 16 8 C 0.01 0.15 2.42 -93.41 -0.23 -0.08 16 9 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 10 C 0.24 4.98 12.97 -20.78 -0.27 4.71 16 11 N -0.48 -10.61 18.53 42.14 0.78 -9.82 16 12 C 0.03 0.81 4.42 -27.88 -0.12 0.69 16 13 C -0.53 -14.15 8.60 -34.44 -0.30 -14.45 16 14 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.09 -0.97 4.71 -104.62 -0.49 -1.46 16 22 C -0.10 -1.02 9.01 -39.58 -0.36 -1.38 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 25 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 26 C -0.11 -1.10 9.67 -39.58 -0.38 -1.48 16 27 H 0.22 2.25 7.80 -54.09 -0.42 1.83 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.34 4.84 7.07 -39.29 -0.28 4.56 16 31 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 32 H 0.11 1.65 4.13 -51.93 -0.21 1.44 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.13 1.39 7.73 -52.49 -0.41 0.99 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.12 1.02 8.04 -52.49 -0.42 0.60 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -30.38 348.40 -8.02 -38.40 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.47 Total: 3.46 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -3.68 Total: -19.05 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.91 Total: -44.49 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.38 -8.02 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819192059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.740 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds