Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46722 * 126.64028 * 3 2 1 5 5 H 1.08994 * 109.47474 * 54.99982 * 4 3 2 6 6 N 1.46907 * 109.47022 * 294.99578 * 4 3 2 7 7 C 1.46900 * 110.99641 * 85.00145 * 6 4 3 8 8 C 1.53002 * 109.46619 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.47070 * 55.00278 * 8 7 6 10 10 C 1.47194 * 109.47253 * 295.00217 * 8 7 6 11 11 N 6.26345 * 103.05017 * 98.55772 * 2 1 3 12 12 C 1.52997 * 109.46817 * 175.00098 * 8 7 6 13 13 C 1.50705 * 109.47390 * 184.99865 * 12 8 7 14 14 H 1.08000 * 119.99498 * 0.02562 * 13 12 8 15 15 C 1.37870 * 120.00441 * 180.02562 * 13 12 8 16 16 N 1.31513 * 119.99840 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00083 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47142 * 60.00110 * 17 15 13 19 19 H 1.48498 * 109.46868 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47038 * 299.99640 * 17 15 13 21 21 C 1.50703 * 109.46691 * 174.99954 * 4 3 2 22 22 C 1.38239 * 119.99985 * 79.72861 * 21 4 3 23 23 C 1.38237 * 119.99456 * 179.80858 * 22 21 4 24 24 C 1.38234 * 120.00097 * 0.39511 * 23 22 21 25 25 C 1.38230 * 120.00352 * 359.85097 * 24 23 22 26 26 C 1.38233 * 119.99665 * 259.99130 * 21 4 3 27 27 H 4.44649 * 5.63232 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.47257 * 6.63947 * 3 2 1 29 29 H 1.09001 * 109.47079 * 246.63750 * 3 2 1 30 30 H 1.00900 * 110.99873 * 208.95557 * 6 4 3 31 31 H 1.09000 * 109.47154 * 60.00280 * 7 6 4 32 32 H 1.08996 * 109.47574 * 299.99823 * 7 6 4 33 33 H 1.09001 * 109.47630 * 305.00128 * 12 8 7 34 34 H 1.09004 * 109.47346 * 65.00258 * 12 8 7 35 35 H 0.97002 * 119.99729 * 180.02562 * 16 15 13 36 36 H 1.07997 * 119.99690 * 359.97438 * 22 21 4 37 37 H 1.08002 * 119.99743 * 180.22477 * 23 22 21 38 38 H 1.08004 * 119.99642 * 179.84115 * 24 23 22 39 39 H 1.07993 * 120.00053 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.00420 * 359.97438 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1556 0.8618 -1.1575 5 1 2.7206 1.8587 -1.0877 6 7 2.7673 0.2462 -2.4336 7 6 1.4069 0.6457 -2.8182 8 6 1.0393 -0.0131 -4.1493 9 1 1.1689 -1.0924 -4.0686 10 6 1.9135 0.5079 -5.2127 11 7 2.5884 0.9080 -6.0337 12 6 -0.4192 0.3014 -4.4883 13 6 -0.8179 -0.4465 -5.7344 14 1 -0.1027 -1.0829 -6.2343 15 6 -2.0956 -0.3184 -6.2362 16 7 -2.9667 0.4562 -5.6272 17 14 -2.5900 -1.2460 -7.7804 18 1 -2.4395 -2.7054 -7.5507 19 1 -4.0055 -0.9406 -8.1095 20 1 -1.7183 -0.8298 -8.9083 21 6 4.6575 0.9629 -1.0850 22 6 5.4434 -0.0751 -1.5497 23 6 6.8211 0.0194 -1.4868 24 6 7.4127 1.1484 -0.9518 25 6 6.6268 2.1842 -0.4824 26 6 5.2491 2.0913 -0.5488 27 1 -1.0501 -0.0004 0.0002 28 1 3.0099 -1.0199 -0.1188 29 1 3.0092 0.4083 0.9434 30 1 3.4297 0.4722 -3.1604 31 1 1.3631 1.7295 -2.9254 32 1 0.7036 0.3279 -2.0486 33 1 -1.0588 -0.0047 -3.6605 34 1 -0.5303 1.3727 -4.6563 35 1 -3.8658 0.5460 -5.9800 36 1 4.9810 -0.9586 -1.9643 37 1 7.4351 -0.7900 -1.8532 38 1 8.4891 1.2211 -0.9003 39 1 7.0890 3.0659 -0.0640 40 1 4.6351 2.9006 -0.1822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819192059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = 77.812423 kcal Electronic energy + Delta-G solvation = -20725.450563 eV Core-core repulsion = 17698.466473 eV Total energy + Delta-G solvation = -3026.984090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.58968 -38.91931 -37.35031 -35.65912 -34.38144 -33.65427 -31.90171 -31.61766 -29.74657 -28.04172 -25.19571 -24.02880 -23.64661 -23.08786 -21.45542 -18.91298 -18.55078 -18.26687 -17.89158 -16.88666 -16.68625 -16.38765 -15.74322 -15.28993 -15.09922 -14.83556 -14.72559 -14.43061 -14.20557 -14.04981 -13.83400 -13.70509 -13.49493 -13.30125 -13.15518 -12.99926 -12.66880 -12.56727 -12.43442 -12.03378 -11.89352 -11.81785 -11.42147 -11.18133 -11.02212 -10.71944 -10.55597 -9.76666 -9.63370 -9.43746 -8.19816 -6.28450 0.43785 0.55580 1.40882 1.42078 1.49440 1.90956 1.93256 2.01287 2.07967 2.40989 2.89745 3.11997 3.14721 3.22489 3.50759 3.92095 4.05604 4.15229 4.22105 4.31798 4.34272 4.36395 4.50064 4.65020 4.70165 4.74998 4.82034 4.89726 5.02044 5.09285 5.11924 5.23285 5.34256 5.45222 5.58112 5.60689 5.65544 5.68053 5.77974 6.00584 6.15939 6.19849 6.29053 6.72040 6.84471 6.85426 7.39995 8.90969 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021804 B = 0.003755 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.858043 B = 7454.186152 C = 8306.942968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.195 4.195 3 C 0.008 3.992 4 C 0.136 3.864 5 H 0.053 0.947 6 N -0.677 5.677 7 C 0.065 3.935 8 C 0.020 3.980 9 H 0.122 0.878 10 C 0.251 3.749 11 N -0.502 5.502 12 C 0.041 3.959 13 C -0.541 4.541 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.922 5.922 17 Si 0.949 3.051 18 H -0.263 1.263 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.100 4.100 22 C -0.110 4.110 23 C -0.131 4.131 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.121 4.121 27 H 0.230 0.770 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.337 0.663 31 H 0.026 0.974 32 H 0.112 0.888 33 H 0.035 0.965 34 H -0.002 1.002 35 H 0.264 0.736 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.241 0.216 15.940 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.195 4.195 3 C -0.029 4.029 4 C 0.027 3.973 5 H 0.071 0.929 6 N -0.308 5.308 7 C -0.065 4.065 8 C -0.002 4.002 9 H 0.139 0.861 10 C -0.065 4.065 11 N -0.180 5.180 12 C 0.003 3.997 13 C -0.579 4.579 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.774 3.226 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.101 4.101 22 C -0.128 4.128 23 C -0.149 4.149 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.140 4.140 27 H 0.246 0.754 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.155 0.845 31 H 0.044 0.956 32 H 0.130 0.870 33 H 0.053 0.947 34 H 0.016 0.984 35 H 0.073 0.927 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.883 0.288 14.985 22.576 hybrid contribution -1.043 0.487 -1.149 1.626 sum 15.841 0.775 13.836 21.047 Atomic orbital electron populations 1.25485 0.96844 1.00500 1.00538 1.23320 0.95066 1.00990 1.00130 1.18810 0.84037 1.02001 0.98073 1.20351 0.90792 0.96256 0.89906 0.92886 1.60666 1.03017 1.62221 1.04912 1.22332 0.91861 0.96789 0.95492 1.19213 0.92373 1.01651 0.86949 0.86063 1.29631 0.91623 0.91660 0.93618 1.81010 1.13920 1.11579 1.11462 1.18950 0.88527 0.95765 0.96501 1.21508 0.97208 1.27926 1.11243 0.92795 1.25710 0.96798 0.96154 0.99999 1.70027 1.05509 1.39243 1.41436 0.85745 0.77136 0.79803 0.79886 1.18738 1.20632 1.20654 1.19854 0.94040 0.95402 1.00791 1.21219 0.93966 0.98805 0.98829 1.21452 0.94800 0.98961 0.99655 1.21497 1.01017 0.93680 0.98114 1.21406 0.93462 0.99659 1.00017 1.21271 0.95703 0.97449 0.99549 0.75362 0.88394 0.87751 0.84453 0.95572 0.87048 0.94663 0.98363 0.92670 0.85258 0.84596 0.84157 0.84110 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.30 17.65 74.32 1.31 -3.99 16 2 C -0.20 -4.73 11.24 31.12 0.35 -4.38 16 3 C 0.01 0.16 5.37 28.79 0.15 0.31 16 4 C 0.14 2.98 2.45 44.17 0.11 3.08 16 5 H 0.05 1.21 7.66 -2.39 -0.02 1.20 16 6 N -0.68 -17.67 5.66 -495.44 -2.81 -20.48 16 7 C 0.07 2.01 4.69 86.30 0.40 2.41 16 8 C 0.02 0.75 2.42 -12.60 -0.03 0.72 16 9 H 0.12 4.31 8.14 -2.39 -0.02 4.29 16 10 C 0.25 10.31 12.97 89.44 1.16 11.48 16 11 N -0.50 -22.20 18.53 20.00 0.37 -21.82 16 12 C 0.04 1.96 4.42 29.85 0.13 2.10 16 13 C -0.54 -29.09 8.60 25.60 0.22 -28.87 16 14 H 0.05 2.87 7.59 -2.91 -0.02 2.84 16 15 C 0.01 0.69 5.46 84.65 0.46 1.15 16 16 N -0.92 -53.30 13.29 21.44 0.28 -53.02 16 17 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 18 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 21 C -0.10 -2.02 4.71 -19.86 -0.09 -2.12 16 22 C -0.11 -2.19 9.01 22.27 0.20 -1.99 16 23 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 24 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 25 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 26 C -0.12 -2.18 9.67 22.27 0.22 -1.96 16 27 H 0.23 4.65 7.80 -4.41 -0.03 4.61 16 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.34 9.35 7.07 -89.69 -0.63 8.72 16 31 H 0.03 0.84 8.05 -2.39 -0.02 0.82 16 32 H 0.11 3.39 4.13 -2.39 -0.01 3.38 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.13 2.61 7.73 -2.91 -0.02 2.58 16 37 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.13 2.00 8.04 -2.91 -0.02 1.97 16 Total: -1.00 -63.65 348.40 5.54 -58.11 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.40 Total: 19.08 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 5.27 Total: -27.62 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -2.15 Total: -95.32 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -63.65 5.54 -58.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819192059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.921 kcal (2) G-P(sol) polarization free energy of solvation -63.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds