Wall clock time and date at job start Tue Mar 31 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47303 * 343.16104 * 3 2 1 5 5 H 1.09003 * 109.47249 * 55.00000 * 4 3 2 6 6 N 1.46893 * 109.47241 * 294.99698 * 4 3 2 7 7 C 1.46910 * 110.99761 * 84.99964 * 6 4 3 8 8 C 1.53002 * 109.46906 * 180.02562 * 7 6 4 9 9 H 1.08996 * 109.47407 * 304.99784 * 8 7 6 10 10 C 1.47206 * 109.47021 * 65.00197 * 8 7 6 11 11 N 4.64260 * 87.05245 * 272.40155 * 2 1 3 12 12 C 1.52997 * 109.46817 * 185.00004 * 8 7 6 13 13 C 1.50698 * 109.46933 * 175.00167 * 12 8 7 14 14 H 1.08003 * 120.00121 * 0.02562 * 13 12 8 15 15 C 1.37882 * 119.99840 * 179.97438 * 13 12 8 16 16 N 1.31510 * 120.00071 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99922 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46815 * 89.99942 * 17 15 13 19 19 H 1.48498 * 109.46961 * 210.00195 * 17 15 13 20 20 H 1.48497 * 109.47305 * 330.00346 * 17 15 13 21 21 C 1.50708 * 109.47160 * 174.99998 * 4 3 2 22 22 C 1.38234 * 119.99980 * 79.72542 * 21 4 3 23 23 C 1.38233 * 120.00096 * 179.80952 * 22 21 4 24 24 C 1.38231 * 119.99767 * 0.40057 * 23 22 21 25 25 C 1.38237 * 120.00271 * 359.85509 * 24 23 22 26 26 C 1.38228 * 119.99797 * 259.99951 * 21 4 3 27 27 H 4.44641 * 5.63247 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47287 * 223.15915 * 3 2 1 29 29 H 1.09003 * 109.46878 * 103.15842 * 3 2 1 30 30 H 1.00899 * 110.99952 * 321.05189 * 6 4 3 31 31 H 1.08997 * 109.46998 * 60.00442 * 7 6 4 32 32 H 1.08997 * 109.46873 * 300.00074 * 7 6 4 33 33 H 1.08998 * 109.47192 * 294.99969 * 12 8 7 34 34 H 1.09000 * 109.47325 * 55.00085 * 12 8 7 35 35 H 0.97004 * 119.99924 * 179.97438 * 16 15 13 36 36 H 1.08005 * 119.99816 * 359.97438 * 22 21 4 37 37 H 1.07991 * 120.00234 * 180.22588 * 23 22 21 38 38 H 1.08005 * 120.00140 * 179.83132 * 24 23 22 39 39 H 1.07995 * 120.00368 * 179.97438 * 25 24 23 40 40 H 1.08002 * 120.00521 * 359.97438 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3797 0.4179 5 1 2.7224 -2.1397 -0.2317 6 7 2.7683 -1.6449 1.8095 7 6 1.4083 -2.1960 1.8806 8 6 1.0400 -2.4580 3.3423 9 1 1.7937 -3.1005 3.7974 10 6 0.9807 -1.1797 4.0700 11 7 0.9352 -0.1943 4.6324 12 6 -0.3247 -3.1465 3.4088 13 6 -0.6323 -3.5148 4.8373 14 1 0.0746 -3.2809 5.6196 15 6 -1.8168 -4.1497 5.1458 16 7 -2.6778 -4.4341 4.1933 17 14 -2.1979 -4.6069 6.9165 18 1 -2.9158 -3.4855 7.5737 19 1 -3.0502 -5.8227 6.9412 20 1 -0.9304 -4.8761 7.6419 21 6 4.6586 -1.4166 0.2998 22 6 5.4437 -0.8583 1.2912 23 6 6.8215 -0.8956 1.1849 24 6 7.4140 -1.4839 0.0832 25 6 6.6288 -2.0375 -0.9108 26 6 5.2510 -2.0037 -0.8025 27 1 -1.0497 -0.0004 -0.0001 28 1 3.0090 0.7505 0.7029 29 1 3.0092 0.2348 -1.0007 30 1 2.8507 -0.8119 2.3729 31 1 1.3655 -3.1308 1.3216 32 1 0.7045 -1.4832 1.4510 33 1 -1.0922 -2.4687 3.0350 34 1 -0.3069 -4.0482 2.7968 35 1 -3.5110 -4.8810 4.4103 36 1 4.9807 -0.3953 2.1501 37 1 7.4349 -0.4627 1.9611 38 1 8.4904 -1.5107 -0.0012 39 1 7.0916 -2.4968 -1.7717 40 1 4.6376 -2.4364 -1.5790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819192063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:12 Heat of formation + Delta-G solvation = 93.600163 kcal Electronic energy + Delta-G solvation = -20747.169500 eV Core-core repulsion = 17720.870017 eV Total energy + Delta-G solvation = -3026.299482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.72382 -37.76063 -36.06093 -33.91874 -32.98330 -32.35424 -31.00231 -30.45555 -28.77827 -26.27931 -24.08964 -23.07948 -22.17374 -21.81855 -20.61690 -18.21282 -17.10249 -16.65546 -16.48653 -15.66982 -15.45070 -15.13252 -14.61481 -14.29556 -14.14774 -13.82829 -13.44671 -13.25537 -13.01634 -12.72848 -12.67571 -12.34496 -12.08962 -11.87228 -11.73700 -11.26764 -11.11628 -11.02269 -10.98748 -10.73918 -10.53431 -10.49454 -10.23399 -10.12642 -9.54460 -9.22563 -8.97339 -8.79768 -8.44811 -8.16483 -6.08974 -4.11851 1.27257 1.35323 2.81851 2.86700 3.30170 3.36631 3.40322 3.59082 3.63758 3.71396 4.17294 4.35550 4.43737 4.79337 4.81510 4.86329 4.92013 5.03850 5.08304 5.13678 5.29105 5.40171 5.46914 5.56434 5.58239 5.72219 5.83004 5.89695 5.98616 6.08685 6.19604 6.34805 6.41399 6.45026 6.55259 6.59399 6.92589 7.10159 7.39082 7.45343 7.54523 7.63716 7.86268 8.24236 8.41838 8.92619 9.53466 11.01904 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.003675 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.053220 B = 7616.329048 C = 8083.063633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.198 4.198 3 C -0.036 4.036 4 C 0.131 3.869 5 H 0.094 0.906 6 N -0.679 5.679 7 C 0.051 3.949 8 C 0.007 3.993 9 H 0.109 0.891 10 C 0.242 3.758 11 N -0.478 5.478 12 C 0.034 3.966 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.064 4.064 22 C -0.096 4.096 23 C -0.122 4.122 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.114 4.114 27 H 0.218 0.782 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.338 0.662 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.024 0.976 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.847 5.530 -13.092 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C -0.074 4.074 4 C 0.021 3.979 5 H 0.112 0.888 6 N -0.309 5.309 7 C -0.078 4.078 8 C -0.015 4.015 9 H 0.127 0.873 10 C -0.074 4.074 11 N -0.155 5.155 12 C -0.004 4.004 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.065 4.065 22 C -0.114 4.114 23 C -0.140 4.140 24 C -0.144 4.144 25 C -0.140 4.140 26 C -0.132 4.132 27 H 0.235 0.765 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.157 0.843 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.909 6.303 -12.240 21.039 hybrid contribution -1.070 0.070 0.698 1.279 sum 14.839 6.373 -11.542 19.851 Atomic orbital electron populations 1.24981 0.96065 0.99434 0.99865 1.22788 0.94297 1.01447 1.01297 1.19454 0.85402 0.99020 1.03520 1.20435 0.91079 0.95026 0.91406 0.88800 1.60717 1.26766 1.35151 1.08227 1.22453 0.88179 1.00931 0.96237 1.19323 1.03877 0.86996 0.91327 0.87335 1.29307 0.91176 0.94122 0.92821 1.81003 1.10916 1.13437 1.10114 1.19136 0.87486 0.95628 0.98189 1.21153 1.03712 1.38611 0.92906 0.92541 1.24947 0.96146 0.95590 0.97259 1.69937 1.09532 1.41519 1.32057 0.86601 0.78475 0.77984 0.85081 1.20704 1.21079 1.19706 1.19709 0.94410 0.97831 0.94540 1.20962 0.93364 0.98856 0.98229 1.21142 0.94923 0.99901 0.98022 1.21117 0.99620 0.99002 0.94639 1.21073 0.93754 1.00149 0.99063 1.21006 0.94855 0.99633 0.97728 0.76500 0.89585 0.89095 0.84335 0.89343 0.92680 0.95807 0.94294 0.92827 0.86097 0.86293 0.86476 0.86303 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 17.65 29.55 0.52 -1.91 16 2 C -0.20 -2.56 11.24 -37.12 -0.42 -2.97 16 3 C -0.04 -0.38 5.15 -29.52 -0.15 -0.53 16 4 C 0.13 1.46 2.42 -68.87 -0.17 1.29 16 5 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 6 N -0.68 -9.00 5.67 -107.95 -0.61 -9.61 16 7 C 0.05 0.78 4.69 -3.82 -0.02 0.77 16 8 C 0.01 0.13 2.42 -93.40 -0.23 -0.10 16 9 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 10 C 0.24 4.96 12.97 -20.77 -0.27 4.69 16 11 N -0.48 -10.46 18.53 42.14 0.78 -9.68 16 12 C 0.03 0.80 4.42 -27.89 -0.12 0.68 16 13 C -0.53 -14.11 8.60 -34.44 -0.30 -14.41 16 14 H 0.06 1.51 7.59 -52.48 -0.40 1.12 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.06 -0.68 4.95 -104.62 -0.52 -1.20 16 22 C -0.10 -1.03 9.32 -39.58 -0.37 -1.40 16 23 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 24 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.11 -1.10 9.67 -39.58 -0.38 -1.48 16 27 H 0.22 2.37 7.80 -54.11 -0.42 1.95 16 28 H 0.09 0.90 8.04 -51.93 -0.42 0.48 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.34 4.64 6.84 -39.29 -0.27 4.37 16 31 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 32 H 0.06 0.87 4.13 -51.93 -0.21 0.65 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.12 1.28 7.26 -52.48 -0.38 0.90 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 LS Contribution 347.92 15.07 5.24 5.24 Total: -1.00 -30.51 347.92 -8.01 -38.52 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.43 Total: 3.51 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -3.71 Total: -19.55 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.90 Total: -44.14 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.51 -8.01 -38.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819192063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.122 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds