Wall clock time and date at job start Tue Mar 31 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47303 * 343.16104 * 3 2 1 5 5 H 1.09003 * 109.47249 * 55.00000 * 4 3 2 6 6 N 1.46893 * 109.47241 * 294.99698 * 4 3 2 7 7 C 1.46910 * 110.99761 * 84.99964 * 6 4 3 8 8 C 1.53002 * 109.46906 * 180.02562 * 7 6 4 9 9 H 1.08996 * 109.47407 * 304.99784 * 8 7 6 10 10 C 1.47206 * 109.47021 * 65.00197 * 8 7 6 11 11 N 4.64260 * 87.05245 * 272.40155 * 2 1 3 12 12 C 1.52997 * 109.46817 * 185.00004 * 8 7 6 13 13 C 1.50698 * 109.46933 * 175.00167 * 12 8 7 14 14 H 1.08003 * 120.00121 * 0.02562 * 13 12 8 15 15 C 1.37882 * 119.99840 * 179.97438 * 13 12 8 16 16 N 1.31510 * 120.00071 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99922 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46815 * 89.99942 * 17 15 13 19 19 H 1.48498 * 109.46961 * 210.00195 * 17 15 13 20 20 H 1.48497 * 109.47305 * 330.00346 * 17 15 13 21 21 C 1.50708 * 109.47160 * 174.99998 * 4 3 2 22 22 C 1.38234 * 119.99980 * 79.72542 * 21 4 3 23 23 C 1.38233 * 120.00096 * 179.80952 * 22 21 4 24 24 C 1.38231 * 119.99767 * 0.40057 * 23 22 21 25 25 C 1.38237 * 120.00271 * 359.85509 * 24 23 22 26 26 C 1.38228 * 119.99797 * 259.99951 * 21 4 3 27 27 H 4.44641 * 5.63247 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47287 * 223.15915 * 3 2 1 29 29 H 1.09003 * 109.46878 * 103.15842 * 3 2 1 30 30 H 1.00899 * 110.99952 * 321.05189 * 6 4 3 31 31 H 1.08997 * 109.46998 * 60.00442 * 7 6 4 32 32 H 1.08997 * 109.46873 * 300.00074 * 7 6 4 33 33 H 1.08998 * 109.47192 * 294.99969 * 12 8 7 34 34 H 1.09000 * 109.47325 * 55.00085 * 12 8 7 35 35 H 0.97004 * 119.99924 * 179.97438 * 16 15 13 36 36 H 1.08005 * 119.99816 * 359.97438 * 22 21 4 37 37 H 1.07991 * 120.00234 * 180.22588 * 23 22 21 38 38 H 1.08005 * 120.00140 * 179.83132 * 24 23 22 39 39 H 1.07995 * 120.00368 * 179.97438 * 25 24 23 40 40 H 1.08002 * 120.00521 * 359.97438 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3797 0.4179 5 1 2.7224 -2.1397 -0.2317 6 7 2.7683 -1.6449 1.8095 7 6 1.4083 -2.1960 1.8806 8 6 1.0400 -2.4580 3.3423 9 1 1.7937 -3.1005 3.7974 10 6 0.9807 -1.1797 4.0700 11 7 0.9352 -0.1943 4.6324 12 6 -0.3247 -3.1465 3.4088 13 6 -0.6323 -3.5148 4.8373 14 1 0.0746 -3.2809 5.6196 15 6 -1.8168 -4.1497 5.1458 16 7 -2.6778 -4.4341 4.1933 17 14 -2.1979 -4.6069 6.9165 18 1 -2.9158 -3.4855 7.5737 19 1 -3.0502 -5.8227 6.9412 20 1 -0.9304 -4.8761 7.6419 21 6 4.6586 -1.4166 0.2998 22 6 5.4437 -0.8583 1.2912 23 6 6.8215 -0.8956 1.1849 24 6 7.4140 -1.4839 0.0832 25 6 6.6288 -2.0375 -0.9108 26 6 5.2510 -2.0037 -0.8025 27 1 -1.0497 -0.0004 -0.0001 28 1 3.0090 0.7505 0.7029 29 1 3.0092 0.2348 -1.0007 30 1 2.8507 -0.8119 2.3729 31 1 1.3655 -3.1308 1.3216 32 1 0.7045 -1.4832 1.4510 33 1 -1.0922 -2.4687 3.0350 34 1 -0.3069 -4.0482 2.7968 35 1 -3.5110 -4.8810 4.4103 36 1 4.9807 -0.3953 2.1501 37 1 7.4349 -0.4627 1.9611 38 1 8.4904 -1.5107 -0.0012 39 1 7.0916 -2.4968 -1.7717 40 1 4.6376 -2.4364 -1.5790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819192063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:12 Heat of formation + Delta-G solvation = 77.955271 kcal Electronic energy + Delta-G solvation = -20747.847913 eV Core-core repulsion = 17720.870017 eV Total energy + Delta-G solvation = -3026.977896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54322 -38.95401 -37.41764 -35.66545 -34.35716 -33.65037 -31.87625 -31.55707 -29.76482 -27.96350 -25.16230 -24.19039 -23.62259 -23.04044 -21.45151 -19.18069 -18.53714 -18.28592 -17.69808 -16.86572 -16.50936 -16.28228 -15.99796 -15.26422 -15.05461 -14.99184 -14.78261 -14.43612 -14.21727 -14.08895 -13.86767 -13.64907 -13.45787 -13.30334 -13.07055 -12.74880 -12.71047 -12.47509 -12.35672 -12.07630 -11.82503 -11.73115 -11.48379 -11.40087 -11.18447 -11.05239 -10.56066 -9.68762 -9.56235 -9.22102 -8.19964 -6.28253 0.54363 0.63840 1.39420 1.41265 1.50852 1.82054 1.86950 1.94039 1.95546 2.40877 2.93645 3.14902 3.19962 3.24690 3.43034 3.98873 4.03686 4.15226 4.23839 4.31756 4.32634 4.41211 4.45761 4.61245 4.71200 4.75134 4.81579 4.91557 4.97625 5.01160 5.13814 5.23198 5.28817 5.46062 5.60634 5.67954 5.74782 5.75835 5.78941 6.04347 6.20333 6.24396 6.28904 6.64886 6.74116 6.86230 7.40169 8.90918 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.003675 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.053220 B = 7616.329048 C = 8083.063633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.206 4.206 3 C -0.033 4.033 4 C 0.137 3.863 5 H 0.097 0.903 6 N -0.678 5.678 7 C 0.063 3.937 8 C 0.019 3.981 9 H 0.119 0.881 10 C 0.252 3.748 11 N -0.502 5.502 12 C 0.042 3.958 13 C -0.540 4.540 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.922 5.922 17 Si 0.948 3.052 18 H -0.283 1.283 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.074 4.074 22 C -0.112 4.112 23 C -0.132 4.132 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.121 4.121 27 H 0.229 0.771 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.335 0.665 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.001 0.999 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.462 5.201 -13.624 22.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.206 4.206 3 C -0.071 4.071 4 C 0.027 3.973 5 H 0.115 0.885 6 N -0.308 5.308 7 C -0.067 4.067 8 C -0.003 4.003 9 H 0.136 0.864 10 C -0.064 4.064 11 N -0.180 5.180 12 C 0.003 3.997 13 C -0.578 4.578 14 H 0.071 0.929 15 C -0.187 4.187 16 N -0.562 5.562 17 Si 0.773 3.227 18 H -0.209 1.209 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.075 4.075 22 C -0.130 4.130 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.139 4.139 27 H 0.245 0.755 28 H 0.106 0.894 29 H 0.129 0.871 30 H 0.154 0.846 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.019 0.981 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 17.542 5.976 -12.777 22.510 hybrid contribution -1.521 0.186 0.828 1.741 sum 16.021 6.162 -11.950 20.915 Atomic orbital electron populations 1.25494 0.96920 0.99784 1.00367 1.23350 0.95149 1.01172 1.00941 1.19526 0.84066 0.98818 1.04711 1.20409 0.91707 0.95277 0.89881 0.88538 1.60684 1.25056 1.35194 1.09824 1.22274 0.89353 1.01511 0.93544 1.19210 1.01550 0.85944 0.93618 0.86357 1.29594 0.90463 0.94146 0.92220 1.81001 1.11588 1.14350 1.11056 1.18945 0.89333 0.95197 0.96252 1.21547 1.03637 1.38160 0.94444 0.92887 1.25704 0.96263 0.95819 1.00884 1.70029 1.09977 1.42399 1.33803 0.85705 0.78496 0.77716 0.80747 1.20949 1.20274 1.18903 1.19665 0.93774 0.98813 0.95250 1.21038 0.94069 0.99557 0.98354 1.21371 0.94720 1.00088 0.98819 1.21437 1.00882 0.98228 0.94193 1.21396 0.93570 0.99697 0.99722 1.21237 0.95556 0.99376 0.97725 0.75465 0.89447 0.87105 0.84642 0.88414 0.93097 0.98098 0.94818 0.92693 0.86699 0.85081 0.84391 0.84102 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.41 17.65 74.32 1.31 -4.10 16 2 C -0.21 -5.17 11.24 31.13 0.35 -4.82 16 3 C -0.03 -0.67 5.15 28.79 0.15 -0.52 16 4 C 0.14 2.86 2.42 44.17 0.11 2.97 16 5 H 0.10 1.97 7.66 -2.39 -0.02 1.96 16 6 N -0.68 -17.31 5.67 -495.43 -2.81 -20.12 16 7 C 0.06 1.87 4.69 86.30 0.40 2.28 16 8 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 9 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 10 C 0.25 10.24 12.97 89.45 1.16 11.40 16 11 N -0.50 -21.93 18.53 20.00 0.37 -21.56 16 12 C 0.04 1.95 4.42 29.85 0.13 2.08 16 13 C -0.54 -28.98 8.60 25.60 0.22 -28.76 16 14 H 0.05 2.83 7.59 -2.91 -0.02 2.80 16 15 C 0.01 0.68 5.46 84.66 0.46 1.14 16 16 N -0.92 -53.19 13.29 21.45 0.28 -52.91 16 17 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 21 C -0.07 -1.47 4.95 -19.87 -0.10 -1.57 16 22 C -0.11 -2.28 9.32 22.27 0.21 -2.07 16 23 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 24 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 25 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 26 C -0.12 -2.06 9.67 22.27 0.22 -1.84 16 27 H 0.23 5.02 7.80 -4.43 -0.03 4.98 16 28 H 0.09 1.75 8.04 -2.39 -0.02 1.73 16 29 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.34 8.98 6.84 -89.69 -0.61 8.36 16 31 H 0.10 2.75 8.05 -2.39 -0.02 2.73 16 32 H 0.05 1.58 4.13 -2.39 -0.01 1.57 16 33 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 36 H 0.11 2.39 7.26 -2.91 -0.02 2.37 16 37 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.14 1.84 8.04 -2.91 -0.02 1.81 16 Total: -1.00 -63.96 347.92 5.55 -58.40 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.42 Total: 19.19 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 5.26 Total: -28.77 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -2.16 Total: -94.59 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -63.96 5.55 -58.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819192063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.358 kcal (2) G-P(sol) polarization free energy of solvation -63.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds