Wall clock time and date at job start Tue Mar 31 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 110.99863 * 2 1 4 4 C 1.46903 * 111.00338 * 123.94977 * 2 1 3 5 5 C 1.53005 * 109.46776 * 66.04824 * 4 2 1 6 6 O 1.42900 * 109.47193 * 65.00084 * 5 4 2 7 7 C 1.36049 * 117.00233 * 179.97438 * 6 5 4 8 8 C 1.38634 * 119.99028 * 0.02562 * 7 6 5 9 9 C 1.38141 * 120.04402 * 180.02562 * 8 7 6 10 10 C 1.38863 * 120.02231 * 359.97346 * 9 8 7 11 11 N 1.39926 * 120.01083 * 180.02562 * 10 9 8 12 12 C 1.46507 * 120.00020 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47006 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00449 * 359.72165 * 13 12 11 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 C 1.38842 * 119.97789 * 0.27890 * 10 9 8 22 22 C 1.38299 * 119.95372 * 359.48771 * 21 10 9 23 23 F 1.35099 * 120.00816 * 180.23136 * 22 21 10 24 24 H 1.09001 * 109.47249 * 296.04346 * 1 2 3 25 25 H 1.09001 * 109.47195 * 56.04743 * 1 2 3 26 26 H 1.09000 * 109.46904 * 176.05080 * 1 2 3 27 27 H 1.09004 * 109.47257 * 183.95433 * 3 2 1 28 28 H 1.08995 * 109.47240 * 303.95086 * 3 2 1 29 29 H 1.09004 * 109.47413 * 63.95663 * 3 2 1 30 30 H 1.08999 * 109.47263 * 306.05274 * 4 2 1 31 31 H 1.09003 * 109.47338 * 186.04401 * 4 2 1 32 32 H 1.08998 * 109.47153 * 305.00406 * 5 4 2 33 33 H 1.08998 * 109.47316 * 185.00098 * 5 4 2 34 34 H 1.08000 * 119.97176 * 359.97438 * 8 7 6 35 35 H 1.08009 * 119.98630 * 179.97438 * 9 8 7 36 36 H 0.97004 * 120.00429 * 0.02562 * 11 10 9 37 37 H 1.08998 * 109.47049 * 59.99712 * 12 11 10 38 38 H 1.09001 * 109.46896 * 299.99984 * 12 11 10 39 39 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 40 40 H 1.07996 * 120.02687 * 179.72418 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9704 6 8 2.2956 -2.7696 -0.1799 7 6 2.0781 -4.0803 -0.4724 8 6 1.2427 -4.8403 0.3316 9 6 1.0215 -6.1715 0.0360 10 6 1.6354 -6.7495 -1.0673 11 7 1.4107 -8.0977 -1.3669 12 6 2.0589 -8.7075 -2.5307 13 6 1.6542 -10.1557 -2.6296 14 1 0.9852 -10.5808 -1.8962 15 6 2.1425 -10.9395 -3.6536 16 7 2.9569 -10.4217 -4.5471 17 14 1.6470 -12.7367 -3.7718 18 1 0.4188 -12.8583 -4.5976 19 1 2.7456 -13.5125 -4.4014 20 1 1.3828 -13.2679 -2.4105 21 6 2.4763 -5.9905 -1.8702 22 6 2.6933 -4.6567 -1.5762 23 9 3.5076 -3.9160 -2.3593 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0827 1.3433 -0.0709 28 1 1.5898 1.9163 -0.8524 29 1 1.7043 1.8724 0.9233 30 1 1.5611 -0.3872 2.0628 31 1 3.0798 -0.6610 1.1756 32 1 0.5533 -2.3389 0.8433 33 1 1.9439 -2.7963 1.8557 34 1 0.7653 -4.3915 1.1902 35 1 0.3708 -6.7629 0.6633 36 1 0.8257 -8.6287 -0.8040 37 1 3.1412 -8.6388 -2.4212 38 1 1.7511 -8.1820 -3.4347 39 1 3.3000 -10.9730 -5.2676 40 1 2.9576 -6.4404 -2.7259 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819492008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:41 Heat of formation + Delta-G solvation = -50.778955 kcal Electronic energy + Delta-G solvation = -21448.995728 eV Core-core repulsion = 17985.666273 eV Total energy + Delta-G solvation = -3463.329455 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.27187 -39.67835 -38.13837 -36.99487 -34.46426 -32.48950 -30.63502 -30.01457 -28.45428 -27.83860 -26.08915 -24.70285 -23.13487 -21.98610 -21.52578 -20.41107 -18.11142 -17.43908 -16.51010 -16.43845 -16.01970 -15.36452 -15.25384 -15.06113 -14.79121 -14.60770 -14.30441 -14.10203 -13.65651 -13.34830 -13.14480 -12.77761 -12.64488 -12.27564 -12.14661 -12.07751 -11.95212 -11.74444 -11.55998 -11.25576 -11.03076 -10.90226 -10.71072 -10.62445 -10.18555 -9.42764 -9.05565 -8.56877 -8.51619 -8.34694 -6.46512 -6.22380 -4.28108 1.59757 1.99421 3.21963 3.28404 3.30814 3.37336 3.69024 4.15121 4.20377 4.42028 4.68875 4.79561 4.81000 4.94747 5.07706 5.11402 5.14777 5.17465 5.19509 5.30440 5.36403 5.49352 5.59368 5.63273 5.69650 5.73758 6.01074 6.23941 6.39407 6.57943 6.70489 6.74396 6.76994 6.99635 7.17587 7.39516 7.57876 7.76399 7.91821 8.21020 8.60754 8.86326 9.38320 10.88186 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041951 B = 0.002860 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.279162 B = 9788.907458 C =10151.155400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.539 5.539 3 C 0.026 3.974 4 C 0.056 3.944 5 C 0.065 3.935 6 O -0.298 6.298 7 C 0.012 3.988 8 C -0.131 4.131 9 C -0.190 4.190 10 C 0.230 3.770 11 N -0.726 5.726 12 C 0.249 3.751 13 C -0.540 4.540 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.205 4.205 22 C 0.124 3.876 23 F -0.137 7.137 24 H 0.023 0.977 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.022 0.978 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.394 0.606 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.266 0.734 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 18.473 12.132 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.263 5.263 3 C -0.122 4.122 4 C -0.072 4.072 5 C -0.011 4.011 6 O -0.213 6.213 7 C -0.035 4.035 8 C -0.150 4.150 9 C -0.213 4.213 10 C 0.120 3.880 11 N -0.350 5.350 12 C 0.127 3.873 13 C -0.579 4.579 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.525 5.525 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.230 4.230 22 C 0.103 3.897 23 F -0.115 7.115 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.227 0.773 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.620 18.241 11.195 21.707 hybrid contribution -0.744 -0.772 0.808 1.343 sum -4.365 17.469 12.003 21.640 Atomic orbital electron populations 1.22468 0.87390 1.02609 1.00320 1.61894 1.07893 1.13670 1.42875 1.22381 1.01032 0.88552 1.00266 1.22183 1.01618 0.91767 0.91604 1.22715 0.96937 0.93453 0.87964 1.86171 1.67807 1.21599 1.45692 1.18516 1.02798 0.84645 0.97557 1.20660 1.00076 0.94398 0.99912 1.20369 1.06161 0.95105 0.99689 1.17659 0.92274 0.85935 0.92089 1.45514 1.51373 1.06032 1.32036 1.19157 0.92844 0.92758 0.82506 1.21172 1.29880 0.94581 1.12222 0.91936 1.24941 0.94680 0.99180 0.95207 1.69946 1.31508 1.36716 1.14355 0.86401 0.78240 0.83856 0.78360 1.20432 1.20963 1.19768 1.20516 1.05935 0.91816 1.04691 1.16645 0.94183 0.88971 0.89865 1.91457 1.70390 1.76537 1.73165 0.95837 0.91220 0.91031 0.91185 0.91276 0.95928 0.92964 0.89548 0.92325 0.92049 0.85665 0.85968 0.77263 0.96036 0.96004 0.92389 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.33 60.06 0.56 0.74 16 2 N -0.54 -5.57 4.97 -251.26 -1.25 -6.82 16 3 C 0.03 0.21 9.57 60.07 0.57 0.78 16 4 C 0.06 0.52 5.34 -3.82 -0.02 0.50 16 5 C 0.07 0.71 4.80 37.16 0.18 0.88 16 6 O -0.30 -4.61 9.95 -19.90 -0.20 -4.81 16 7 C 0.01 0.20 6.69 -39.19 -0.26 -0.07 16 8 C -0.13 -1.90 9.03 -39.47 -0.36 -2.26 16 9 C -0.19 -2.98 9.89 -39.39 -0.39 -3.37 16 10 C 0.23 4.35 6.65 -83.71 -0.56 3.79 16 11 N -0.73 -14.98 5.73 -59.77 -0.34 -15.32 16 12 C 0.25 6.23 4.67 -5.19 -0.02 6.21 16 13 C -0.54 -14.44 9.28 -34.44 -0.32 -14.76 16 14 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 17 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 21 C -0.21 -4.04 9.29 -39.34 -0.37 -4.41 16 22 C 0.12 2.33 7.31 -39.32 -0.29 2.04 16 23 F -0.14 -2.67 17.11 2.25 0.04 -2.63 16 24 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 26 H 0.07 0.66 6.37 -51.93 -0.33 0.33 16 27 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 28 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.05 0.37 8.12 -51.93 -0.42 -0.05 16 31 H 0.09 0.81 8.06 -51.93 -0.42 0.39 16 32 H 0.06 0.59 5.85 -51.93 -0.30 0.28 16 33 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 34 H 0.13 1.41 6.29 -52.49 -0.33 1.08 16 35 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 36 H 0.39 7.41 8.34 -40.82 -0.34 7.07 16 37 H 0.02 0.58 7.94 -51.93 -0.41 0.17 16 38 H 0.02 0.59 7.96 -51.93 -0.41 0.18 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 40 H 0.14 3.00 6.73 -52.49 -0.35 2.65 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -30.02 337.13 -8.11 -38.13 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.79 Total: 3.72 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.37 Total: -8.29 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.85 Total: -46.89 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.20 Total: -4.81 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.02 -8.11 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819492008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.653 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds