Wall clock time and date at job start Tue Mar 31 2020 06:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47100 * 2 1 4 4 C 1.33323 * 122.71367 * 84.97198 * 3 2 1 5 5 S 1.76162 * 108.09800 * 180.02562 * 4 3 2 6 6 C 1.70968 * 90.35471 * 0.02562 * 5 4 3 7 7 N 1.38609 * 124.94860 * 179.97438 * 6 5 4 8 8 C 1.46493 * 120.00235 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47176 * 89.99714 * 8 7 6 10 10 H 1.08001 * 119.99783 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99905 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00102 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47151 * 89.99943 * 13 11 9 15 15 H 1.48504 * 109.47297 * 210.00313 * 13 11 9 16 16 H 1.48507 * 109.47172 * 330.00237 * 13 11 9 17 17 C 1.46507 * 120.00066 * 0.02562 * 7 6 5 18 18 C 1.53006 * 109.46840 * 90.00010 * 17 7 6 19 19 C 1.52993 * 109.47162 * 180.02562 * 18 17 7 20 20 C 1.52994 * 109.47315 * 175.00320 * 19 18 17 21 21 C 1.53004 * 109.47138 * 295.00104 * 19 18 17 22 22 N 1.29683 * 110.10323 * 359.97438 * 6 5 4 23 23 H 1.09001 * 109.47349 * 299.99999 * 1 2 3 24 24 H 1.09007 * 109.46961 * 60.00407 * 1 2 3 25 25 H 1.08999 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47130 * 239.99498 * 2 1 3 27 27 H 1.09002 * 109.46540 * 119.99452 * 2 1 3 28 28 H 1.08007 * 125.94910 * 0.04887 * 4 3 2 29 29 H 1.08996 * 109.47608 * 209.99819 * 8 7 6 30 30 H 1.09000 * 109.47003 * 330.00399 * 8 7 6 31 31 H 0.97000 * 119.99340 * 179.97438 * 12 11 9 32 32 H 1.08990 * 109.47199 * 209.99961 * 17 7 6 33 33 H 1.09002 * 109.46845 * 330.00364 * 17 7 6 34 34 H 1.08997 * 109.46892 * 300.00259 * 18 17 7 35 35 H 1.09002 * 109.46945 * 59.99990 * 18 17 7 36 36 H 1.09003 * 109.47311 * 54.99896 * 19 18 17 37 37 H 1.09003 * 109.47277 * 59.99555 * 20 19 18 38 38 H 1.09003 * 109.47176 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.46916 * 299.99604 * 20 19 18 40 40 H 1.08999 * 109.47497 * 179.97438 * 21 19 18 41 41 H 1.09003 * 109.46850 * 300.00075 * 21 19 18 42 42 H 1.09002 * 109.47270 * 59.99618 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1798 2.1329 1.1174 5 16 2.7841 3.7273 0.6746 6 6 2.7797 3.2822 -0.9761 7 7 3.1669 4.1057 -2.0216 8 6 3.1193 3.6114 -3.3998 9 6 1.7682 3.9131 -3.9954 10 1 1.0200 4.4226 -3.4063 11 6 1.4873 3.5388 -5.2923 12 7 0.3084 3.8026 -5.8122 13 14 2.7811 2.6569 -6.3110 14 1 2.6454 1.1904 -6.1214 15 1 2.5932 2.9901 -7.7459 16 1 4.1335 3.0893 -5.8754 17 6 3.6237 5.4707 -1.7484 18 6 5.1379 5.4672 -1.5285 19 6 5.6149 6.8925 -1.2425 20 6 7.1059 6.8722 -0.9001 21 6 5.3875 7.7642 -2.4793 22 7 2.3613 2.0617 -1.1076 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.9664 1.7915 2.1197 29 1 3.8938 4.1023 -3.9889 30 1 3.2863 2.5343 -3.4054 31 1 0.1110 3.5396 -6.7247 32 1 3.3812 6.1115 -2.5961 33 1 3.1275 5.8477 -0.8541 34 1 5.3803 4.8263 -0.6808 35 1 5.6340 5.0901 -2.4228 36 1 5.0545 7.3014 -0.4018 37 1 7.6663 6.4632 -1.7409 38 1 7.4457 7.8876 -0.6960 39 1 7.2679 6.2513 -0.0190 40 1 5.7270 8.7797 -2.2755 41 1 5.9479 7.3552 -3.3200 42 1 4.3253 7.7786 -2.7233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823256543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:04 Heat of formation + Delta-G solvation = 25.235155 kcal Electronic energy + Delta-G solvation = -20361.861142 eV Core-core repulsion = 17468.041081 eV Total energy + Delta-G solvation = -2893.820060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.26187 -37.54958 -35.49210 -32.92309 -32.43074 -29.60194 -28.66190 -27.22863 -27.00047 -24.54889 -23.22187 -22.91947 -20.38626 -19.84162 -18.74955 -17.37814 -16.89079 -15.85699 -15.24987 -14.87538 -14.47187 -14.29589 -13.93067 -13.75355 -13.56731 -13.36797 -12.86919 -12.68697 -12.42999 -12.20520 -12.01444 -11.83473 -11.68434 -11.64653 -11.30856 -10.96556 -10.92240 -10.84705 -10.61457 -10.52980 -10.50536 -10.36711 -10.19713 -9.60231 -9.09038 -8.77875 -8.59447 -8.52867 -6.79506 -6.09479 -4.08019 1.64106 1.79022 2.39085 3.27292 3.33016 3.35298 3.55896 3.64876 4.37989 4.88341 4.89787 4.97723 5.04411 5.22845 5.31974 5.39403 5.55985 5.63041 5.65619 5.69594 5.71714 5.74181 5.85203 5.85987 5.94907 6.06355 6.07950 6.10625 6.11022 6.22411 6.40612 6.43606 6.46156 6.51339 6.60967 6.71721 6.91850 7.57135 7.58957 7.86276 8.48399 8.74065 8.94861 9.50180 11.03908 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.008186 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.035181 B = 3419.821831 C = 5866.141755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.130 3.870 4 C -0.331 4.331 5 S 0.031 5.969 6 C 0.356 3.644 7 N -0.554 5.554 8 C 0.230 3.770 9 C -0.525 4.525 10 H 0.074 0.926 11 C 0.074 3.926 12 N -0.897 5.897 13 Si 0.873 3.127 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 C 0.123 3.877 18 C -0.135 4.135 19 C -0.093 4.093 20 C -0.145 4.145 21 C -0.152 4.152 22 N -0.545 5.545 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.161 0.839 29 H 0.030 0.970 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.071 1.625 12.337 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.003 4.003 4 C -0.473 4.473 5 S 0.279 5.721 6 C -0.015 4.015 7 N -0.268 5.268 8 C 0.108 3.892 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.128 4.128 12 N -0.535 5.535 13 Si 0.700 3.300 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 C -0.001 4.001 18 C -0.174 4.174 19 C -0.112 4.112 20 C -0.202 4.202 21 C -0.209 4.209 22 N -0.271 5.271 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.179 0.821 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.263 2.436 12.010 15.361 hybrid contribution 0.124 -1.277 -0.684 1.454 sum 9.387 1.159 11.326 14.756 Atomic orbital electron populations 1.21703 0.94522 1.01356 1.02559 1.20084 0.96064 0.90069 1.02639 1.19856 0.96844 0.97197 0.86408 1.25816 1.22125 0.96434 1.02877 1.83513 1.68332 1.17504 1.02744 1.23586 0.95299 0.91129 0.91522 1.46393 1.65121 1.10670 1.04582 1.19737 0.97823 0.95678 0.75966 1.21319 0.98102 1.38850 0.98163 0.90800 1.24816 0.95253 0.95275 0.97451 1.69898 1.21100 1.47221 1.15309 0.86897 0.82418 0.80925 0.79713 1.19882 1.21097 1.19120 1.21622 0.93478 0.82659 1.02298 1.22140 0.96346 0.96532 1.02422 1.21045 0.96381 0.95283 0.98481 1.21822 0.95753 1.01319 1.01352 1.21926 1.02402 0.98991 0.97603 1.66291 1.24373 1.06446 1.29978 0.92861 0.91891 0.92540 0.90342 0.90915 0.82111 0.95187 0.94290 0.92590 0.88761 0.91601 0.91832 0.91265 0.91158 0.92751 0.92871 0.92828 0.92984 0.92551 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.89 37.16 0.37 -1.65 16 2 C -0.05 -0.72 6.34 -27.88 -0.18 -0.90 16 3 C 0.13 2.38 5.99 -84.18 -0.50 1.88 16 4 C -0.33 -5.42 11.11 29.02 0.32 -5.10 16 5 S 0.03 0.51 21.68 -107.50 -2.33 -1.82 16 6 C 0.36 7.39 7.74 -87.68 -0.68 6.71 16 7 N -0.55 -11.55 2.56 -177.39 -0.45 -12.01 16 8 C 0.23 5.55 4.35 -5.19 -0.02 5.53 16 9 C -0.53 -14.89 9.94 -34.44 -0.34 -15.24 16 10 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 11 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 12 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 13 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 14 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 17 C 0.12 2.04 5.13 -4.03 -0.02 2.02 16 18 C -0.14 -1.86 5.01 -26.73 -0.13 -2.00 16 19 C -0.09 -1.04 2.92 -90.62 -0.26 -1.30 16 20 C -0.15 -1.42 9.19 37.15 0.34 -1.08 16 21 C -0.15 -1.69 8.95 37.16 0.33 -1.36 16 22 N -0.55 -12.03 9.80 -11.36 -0.11 -12.14 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.16 2.15 8.06 -52.48 -0.42 1.72 16 29 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 30 H 0.04 1.00 7.04 -51.93 -0.37 0.63 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.09 1.61 6.50 -51.93 -0.34 1.27 16 33 H 0.07 1.02 7.04 -51.93 -0.37 0.65 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.74 6.57 -51.93 -0.34 0.40 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -31.54 352.82 -9.64 -41.18 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.29 Total: -0.12 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.88 Total: -10.43 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.21 Total: -50.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -2.33 Total: -1.82 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.54 -9.64 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823256543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.416 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds