Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47238 * 2 1 4 4 C 1.50703 * 109.47104 * 239.99869 * 2 1 3 5 5 N 1.30522 * 126.34510 * 60.02522 * 4 2 1 6 6 N 1.28598 * 109.67168 * 179.97438 * 5 4 2 7 7 C 1.30517 * 109.67556 * 359.97438 * 6 5 4 8 8 C 1.50695 * 126.34955 * 180.02562 * 7 6 5 9 9 N 1.46508 * 109.47254 * 275.53946 * 8 7 6 10 10 C 1.36932 * 119.99784 * 266.88567 * 9 8 7 11 11 H 1.08004 * 120.00172 * 10.97217 * 10 9 8 12 12 C 1.38808 * 120.00182 * 190.97158 * 10 9 8 13 13 N 1.31620 * 119.99925 * 28.85167 * 12 10 9 14 14 Si 1.86807 * 120.00341 * 208.85232 * 12 10 9 15 15 H 1.48496 * 109.47111 * 59.99912 * 14 12 10 16 16 H 1.48503 * 109.46992 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46876 * 299.99876 * 14 12 10 18 18 C 1.46497 * 120.00033 * 86.88197 * 9 8 7 19 19 C 1.50696 * 109.46966 * 90.69138 * 18 9 8 20 20 O 1.20822 * 120.00299 * 359.97438 * 19 18 9 21 21 O 1.34233 * 120.00156 * 180.02562 * 19 18 9 22 22 N 1.35491 * 126.34941 * 239.71214 * 4 2 1 23 23 C 1.46507 * 126.97882 * 0.03895 * 22 4 2 24 24 H 1.08998 * 109.46926 * 300.00218 * 1 2 3 25 25 H 1.09001 * 109.47003 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46640 * 60.00085 * 1 2 3 27 27 H 1.08999 * 109.47343 * 120.00059 * 2 1 3 28 28 H 1.08998 * 109.47340 * 60.00036 * 3 2 1 29 29 H 1.09001 * 109.46975 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46778 * 299.99823 * 3 2 1 31 31 H 1.08997 * 109.47077 * 35.53633 * 8 7 6 32 32 H 1.08998 * 109.47513 * 155.53773 * 8 7 6 33 33 H 0.97001 * 120.00138 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.47121 * 210.68982 * 18 9 8 35 35 H 1.08998 * 109.47214 * 330.69338 * 18 9 8 36 36 H 0.96697 * 117.00132 * 179.97438 * 21 19 18 37 37 H 1.08998 * 109.46920 * 91.73347 * 23 22 4 38 38 H 1.08996 * 109.46869 * 211.74133 * 23 22 4 39 39 H 1.09001 * 109.46731 * 331.73942 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 1.7950 -0.3740 -2.4690 6 7 2.3799 -1.2005 -3.2618 7 6 3.0174 -2.1014 -2.5651 8 6 3.8283 -3.2465 -3.1147 9 7 2.9410 -4.3723 -3.4175 10 6 2.7317 -5.3499 -2.4818 11 1 3.0719 -5.2076 -1.4667 12 6 2.0821 -6.5238 -2.8379 13 7 2.1641 -6.9728 -4.0724 14 14 1.0916 -7.4664 -1.5650 15 1 0.0051 -6.5997 -1.0422 16 1 0.5018 -8.6759 -2.1932 17 1 1.9812 -7.8734 -0.4478 18 6 2.2777 -4.4521 -4.7212 19 6 3.1462 -5.2248 -5.6802 20 8 4.2103 -5.6635 -5.3125 21 8 2.7382 -5.4250 -6.9432 22 7 2.8190 -1.8134 -1.2561 23 6 3.3456 -2.5472 -0.1026 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 4.3354 -2.9284 -4.0256 32 1 4.5680 -3.5554 -2.3760 33 1 1.7099 -7.7930 -4.3214 34 1 1.3189 -4.9585 -4.6107 35 1 2.1150 -3.4462 -5.1083 36 1 3.3295 -5.9261 -7.5214 37 1 2.6541 -3.3456 0.1665 38 1 4.3149 -2.9762 -0.3566 39 1 3.4595 -1.8657 0.7404 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827168325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = 6.857329 kcal Electronic energy + Delta-G solvation = -23131.287909 eV Core-core repulsion = 19690.377712 eV Total energy + Delta-G solvation = -3440.910197 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.59781 -38.65130 -36.08125 -35.55726 -34.54390 -34.21079 -31.85804 -29.69690 -27.56965 -27.29258 -27.20566 -25.90733 -23.17800 -22.71303 -20.60391 -19.81954 -19.57817 -16.91773 -16.70856 -16.61001 -16.02814 -15.26929 -15.09690 -14.87612 -14.41372 -14.13280 -13.60768 -13.52976 -13.51474 -13.30866 -12.81681 -12.74602 -12.18457 -11.81817 -11.71243 -11.52728 -11.28624 -11.15882 -11.07966 -11.05144 -10.87743 -10.71905 -10.34950 -10.12836 -9.94242 -9.76875 -9.66120 -9.20851 -8.66561 -8.46735 -7.33105 -6.08675 -3.36082 2.29913 2.92272 3.25230 3.33467 3.34730 3.41006 3.95134 4.27888 4.43401 4.53766 4.72407 4.86375 5.00011 5.05375 5.20905 5.24804 5.31515 5.37044 5.54186 5.57544 5.62209 5.68633 5.80591 5.85287 6.08012 6.20494 6.29091 6.37901 6.42405 6.52799 6.72690 6.91585 6.92976 7.35750 7.51838 7.91122 7.97577 8.83589 9.32132 9.43391 9.59598 9.96352 11.02328 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.005931 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.838036 B = 4719.582032 C = 5642.796726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.001 4.001 3 C -0.139 4.139 4 C 0.156 3.844 5 N -0.296 5.296 6 N -0.305 5.305 7 C 0.186 3.814 8 C 0.225 3.775 9 N -0.554 5.554 10 C -0.271 4.271 11 H 0.079 0.921 12 C 0.012 3.988 13 N -0.885 5.885 14 Si 0.902 3.098 15 H -0.284 1.284 16 H -0.289 1.289 17 H -0.282 1.282 18 C 0.189 3.811 19 C 0.483 3.517 20 O -0.513 6.513 21 O -0.544 6.544 22 N -0.466 5.466 23 C 0.076 3.924 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.260 0.740 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.381 0.619 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 10.377 7.864 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 C -0.197 4.197 4 C -0.112 4.112 5 N -0.136 5.136 6 N -0.145 5.145 7 C -0.085 4.085 8 C 0.094 3.906 9 N -0.272 5.272 10 C -0.399 4.399 11 H 0.097 0.903 12 C -0.188 4.188 13 N -0.528 5.528 14 Si 0.731 3.269 15 H -0.210 1.210 16 H -0.215 1.215 17 H -0.208 1.208 18 C 0.060 3.940 19 C 0.322 3.678 20 O -0.398 6.398 21 O -0.354 6.354 22 N -0.156 5.156 23 C -0.068 4.068 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.237 0.763 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.208 11.018 6.978 13.044 hybrid contribution 0.383 -2.036 1.390 2.494 sum 0.176 8.982 8.368 12.277 Atomic orbital electron populations 1.21783 0.93035 1.02447 1.02561 1.19460 0.96655 0.95406 0.90704 1.21784 1.00901 0.94368 1.02659 1.24547 0.98501 0.90434 0.97698 1.74065 1.19952 1.21916 0.97699 1.74174 1.11370 1.03315 1.25667 1.26837 1.01931 0.99899 0.79818 1.19160 0.89141 0.83165 0.99090 1.43851 1.50749 1.20983 1.11633 1.19081 1.35007 0.95922 0.89915 0.90295 1.24739 1.01328 0.96230 0.96526 1.69905 1.42440 1.21906 1.18554 0.86365 0.80760 0.78802 0.80964 1.21006 1.21459 1.20815 1.20176 0.95174 0.96170 0.82432 1.24892 0.86107 0.77620 0.79167 1.90493 1.25215 1.47905 1.76210 1.84613 1.54071 1.71499 1.25236 1.46004 1.38494 1.22752 1.08370 1.22036 1.01297 0.97047 0.86406 0.91948 0.92532 0.91313 0.90225 0.91932 0.92844 0.91300 0.90557 0.90905 0.92947 0.88105 0.91543 0.76326 0.89686 0.89041 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 2 C 0.00 -0.01 3.27 -91.77 -0.30 -0.31 16 3 C -0.14 -1.40 9.18 37.16 0.34 -1.06 16 4 C 0.16 2.53 6.54 -154.99 -1.01 1.52 16 5 N -0.30 -5.80 12.21 32.80 0.40 -5.40 16 6 N -0.31 -6.46 12.21 32.79 0.40 -6.06 16 7 C 0.19 3.61 7.61 -154.99 -1.18 2.43 16 8 C 0.23 4.51 6.07 -5.19 -0.03 4.48 16 9 N -0.55 -13.07 2.00 -175.99 -0.35 -13.43 16 10 C -0.27 -6.85 9.63 -15.06 -0.15 -7.00 16 11 H 0.08 1.88 7.98 -52.48 -0.42 1.46 16 12 C 0.01 0.31 4.75 -17.43 -0.08 0.22 16 13 N -0.89 -24.51 9.00 55.49 0.50 -24.01 16 14 Si 0.90 20.69 29.64 -169.99 -5.04 15.65 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.19 4.50 5.57 -5.20 -0.03 4.47 16 19 C 0.48 11.70 6.31 36.00 0.23 11.92 16 20 O -0.51 -13.92 16.58 -18.75 -0.31 -14.24 16 21 O -0.54 -11.31 13.42 -39.27 -0.53 -11.84 16 22 N -0.47 -7.67 3.15 -118.00 -0.37 -8.04 16 23 C 0.08 0.92 10.73 59.85 0.64 1.56 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.77 6.85 -51.93 -0.36 0.41 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 32 H 0.07 1.34 6.98 -51.93 -0.36 0.98 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.10 2.59 6.65 -51.93 -0.35 2.24 16 35 H 0.07 1.47 8.07 -51.93 -0.42 1.05 16 36 H 0.38 6.31 9.10 45.56 0.41 6.73 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.04 7.17 -51.93 -0.37 0.67 16 39 H 0.08 0.72 7.11 -51.93 -0.37 0.35 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -33.75 331.67 -6.27 -40.03 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.74 Total: 5.31 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: -1.23 Total: 17.02 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.58 Total: -56.93 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.84 Total: -26.07 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.04 Total: 15.65 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.75 -6.27 -40.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827168325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.885 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds