Wall clock time and date at job start Tue Mar 31 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.29448 * 117.96071 * 2 1 4 4 C 1.50700 * 117.96193 * 0.51913 * 3 2 1 5 5 C 1.50069 * 124.07426 * 180.49291 * 3 2 1 6 6 C 1.53024 * 110.14612 * 342.87166 * 5 3 2 7 7 H 1.09001 * 109.82112 * 289.64738 * 6 5 3 8 8 C 1.50702 * 109.64100 * 169.11846 * 6 5 3 9 9 O 1.20823 * 120.00227 * 240.77642 * 8 6 5 10 10 O 1.34223 * 119.99692 * 61.05487 * 8 6 5 11 11 C 1.45206 * 116.99854 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.46878 * 179.97438 * 11 10 8 13 13 O 1.42902 * 109.47095 * 65.00699 * 12 11 10 14 14 C 1.42900 * 114.00013 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46693 * 179.97438 * 14 13 12 16 16 H 1.07992 * 120.00379 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99687 * 179.97438 * 15 14 13 18 18 N 1.31523 * 120.00052 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00032 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47025 * 90.00462 * 19 17 15 21 21 H 1.48502 * 109.46872 * 210.00290 * 19 17 15 22 22 H 1.48494 * 109.47173 * 330.00030 * 19 17 15 23 23 C 1.53400 * 108.44002 * 49.43501 * 6 5 3 24 24 C 1.50061 * 117.96106 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.46741 * 275.24191 * 1 2 3 26 26 H 1.09000 * 109.47086 * 35.23869 * 1 2 3 27 27 H 1.08997 * 109.47318 * 155.24318 * 1 2 3 28 28 H 1.09001 * 109.47352 * 54.91100 * 4 3 2 29 29 H 1.08994 * 109.46692 * 174.91319 * 4 3 2 30 30 H 1.08999 * 109.47084 * 294.90888 * 4 3 2 31 31 H 1.08999 * 109.35859 * 222.66385 * 5 3 2 32 32 H 1.08999 * 109.35664 * 103.07922 * 5 3 2 33 33 H 1.08993 * 109.47519 * 300.00175 * 11 10 8 34 34 H 1.08997 * 109.46829 * 60.00665 * 11 10 8 35 35 H 1.08998 * 109.46456 * 185.00396 * 12 11 10 36 36 H 1.09002 * 109.47451 * 305.00419 * 12 11 10 37 37 H 1.08995 * 109.46810 * 299.99980 * 14 13 12 38 38 H 1.08999 * 109.46722 * 59.99857 * 14 13 12 39 39 H 0.97000 * 119.99797 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.64067 * 52.25026 * 23 6 5 41 41 H 1.08997 * 109.63982 * 172.66338 * 23 6 5 42 42 H 1.09000 * 109.36372 * 42.63976 * 24 2 1 43 43 H 1.09003 * 109.25052 * 282.97825 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1140 1.1434 0.0000 4 6 1.2696 2.3916 0.0121 5 6 3.6061 1.3032 -0.0107 6 6 4.2795 -0.0074 0.4020 7 1 4.1094 -0.1924 1.4627 8 6 5.7601 0.0774 0.1337 9 8 6.2800 -0.6963 -0.6349 10 8 6.5020 1.0089 0.7530 11 6 7.9212 1.0317 0.4470 12 6 8.5961 2.1521 1.2408 13 8 8.5153 1.8616 2.6377 14 6 9.1197 2.8509 3.4731 15 6 8.9761 2.4448 4.9172 16 1 8.4731 1.5236 5.1716 17 6 9.4868 3.2493 5.9136 18 7 10.0989 4.3714 5.6038 19 14 9.3081 2.7463 7.7037 20 1 10.4794 1.9275 8.1071 21 1 9.2369 3.9613 8.5545 22 1 8.0659 1.9503 7.8726 23 6 3.6702 -1.1472 -0.4243 24 6 2.2106 -1.3254 -0.0006 25 1 -0.3633 0.0939 1.0234 26 1 -0.3633 0.8393 -0.5929 27 1 -0.3634 -0.9332 -0.4303 28 1 0.5835 2.3580 0.8583 29 1 1.9147 3.2656 0.1017 30 1 0.7001 2.4539 -0.9152 31 1 3.8901 2.0908 0.6873 32 1 3.9329 1.5771 -1.0138 33 1 8.3668 0.0747 0.7180 34 1 8.0601 1.2082 -0.6196 35 1 9.6426 2.2272 0.9453 36 1 8.0921 3.0968 1.0364 37 1 10.1770 2.9402 3.2237 38 1 8.6269 3.8102 3.3150 39 1 10.4578 4.9376 6.3049 40 1 3.7161 -0.8965 -1.4841 41 1 4.2233 -2.0685 -0.2415 42 1 1.7119 -1.9990 -0.6975 43 1 2.1750 -1.7517 1.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829816074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:11 Heat of formation + Delta-G solvation = -147.988520 kcal Electronic energy + Delta-G solvation = -21957.517155 eV Core-core repulsion = 18581.139931 eV Total energy + Delta-G solvation = -3376.377225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.67380 -38.97794 -37.04967 -36.01136 -33.84591 -32.77351 -32.05895 -30.11493 -27.84289 -26.94296 -26.64148 -23.62978 -23.03622 -22.37333 -21.77177 -20.21847 -17.74243 -17.26460 -16.65001 -16.27607 -16.20460 -15.33390 -15.15549 -14.85366 -14.68412 -14.33658 -14.25152 -14.01302 -13.68663 -13.24809 -12.84811 -12.59946 -12.56086 -12.33227 -12.16727 -12.02329 -11.97283 -11.87206 -11.43132 -11.17345 -10.97870 -10.92509 -10.84456 -10.76203 -10.53485 -10.35975 -10.15582 -10.01906 -9.13416 -8.87852 -8.71777 -8.21674 -6.12422 -4.14096 1.98122 2.30272 2.80350 3.29990 3.34890 3.40541 4.31337 4.33132 4.40153 4.65072 4.73746 4.78668 4.93670 5.00837 5.17016 5.20005 5.23675 5.24186 5.26000 5.31973 5.34988 5.46588 5.49562 5.62375 5.65706 5.67752 5.76243 5.80724 5.82031 5.87342 5.94511 5.95006 6.06314 6.10840 6.44893 6.63771 6.86155 7.05012 7.39349 7.77682 7.88791 8.12141 8.52218 8.98605 9.50711 10.99158 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.003238 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.386990 B = 8645.309766 C = 9385.852702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.135 4.135 3 C -0.124 4.124 4 C -0.119 4.119 5 C -0.071 4.071 6 C -0.080 4.080 7 H 0.113 0.887 8 C 0.465 3.535 9 O -0.517 6.517 10 O -0.339 6.339 11 C 0.073 3.927 12 C 0.062 3.938 13 O -0.391 6.391 14 C 0.194 3.806 15 C -0.515 4.515 16 H 0.067 0.933 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.271 1.271 23 C -0.102 4.102 24 C -0.079 4.079 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.264 0.736 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.268 -6.914 -13.943 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.135 4.135 3 C -0.124 4.124 4 C -0.176 4.176 5 C -0.108 4.108 6 C -0.099 4.099 7 H 0.130 0.870 8 C 0.308 3.692 9 O -0.406 6.406 10 O -0.254 6.254 11 C 0.000 4.000 12 C -0.016 4.016 13 O -0.311 6.311 14 C 0.120 3.880 15 C -0.553 4.553 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.736 3.264 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.140 4.140 24 C -0.116 4.116 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.076 -7.119 -14.000 23.201 hybrid contribution 0.379 0.108 0.794 0.887 sum -16.697 -7.011 -13.206 22.413 Atomic orbital electron populations 1.20967 0.92589 1.02223 1.01952 1.20689 0.95695 0.94373 1.02725 1.20594 0.94669 0.94890 1.02204 1.20932 0.99258 0.95652 1.01709 1.20343 0.91740 0.96097 1.02641 1.21132 0.86954 0.98236 1.03618 0.86951 1.23646 0.90432 0.77832 0.77257 1.90628 1.74086 1.40997 1.34852 1.86609 1.22374 1.52578 1.63870 1.23210 0.76865 1.01135 0.98831 1.22319 0.97982 0.95839 0.85438 1.87918 1.80555 1.49425 1.13170 1.20235 0.91885 0.86630 0.89226 1.21052 1.37011 1.07633 0.89610 0.91507 1.24953 0.95022 0.94767 0.99764 1.69965 1.37968 1.12418 1.33472 0.86323 0.78727 0.77972 0.83406 1.20454 1.21048 1.19588 1.21511 0.94962 0.97677 0.99836 1.20397 0.94248 0.94887 1.02078 0.91606 0.91655 0.92301 0.91588 0.91939 0.91656 0.89195 0.90503 0.90544 0.90521 0.92004 0.93213 0.97626 0.97497 0.92628 0.90972 0.90418 0.90602 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 8.98 36.01 0.32 -0.53 16 2 C -0.13 -1.19 5.84 -100.94 -0.59 -1.78 16 3 C -0.12 -1.17 5.84 -100.94 -0.59 -1.76 16 4 C -0.12 -0.95 8.55 36.01 0.31 -0.64 16 5 C -0.07 -0.76 4.96 -28.18 -0.14 -0.90 16 6 C -0.08 -0.94 2.69 -91.55 -0.25 -1.19 16 7 H 0.11 1.29 8.13 -51.93 -0.42 0.87 16 8 C 0.47 7.01 7.23 36.01 0.26 7.27 16 9 O -0.52 -8.70 15.65 -18.75 -0.29 -8.99 16 10 O -0.34 -5.74 10.14 -42.00 -0.43 -6.16 16 11 C 0.07 1.19 5.85 37.16 0.22 1.41 16 12 C 0.06 1.14 6.33 37.16 0.24 1.38 16 13 O -0.39 -9.57 10.30 -38.79 -0.40 -9.96 16 14 C 0.19 5.35 5.69 36.01 0.20 5.55 16 15 C -0.51 -15.27 9.43 -34.44 -0.32 -15.59 16 16 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 19 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.10 -1.05 4.70 -26.51 -0.12 -1.17 16 24 C -0.08 -0.67 5.77 -28.18 -0.16 -0.83 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.42 6.33 -51.93 -0.33 0.09 16 27 H 0.06 0.37 7.98 -51.93 -0.41 -0.05 16 28 H 0.07 0.49 7.71 -51.93 -0.40 0.09 16 29 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 30 H 0.06 0.46 7.33 -51.93 -0.38 0.08 16 31 H 0.09 1.00 8.13 -51.93 -0.42 0.58 16 32 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.08 0.83 7.90 -51.93 -0.41 0.42 16 42 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -32.77 354.49 -8.16 -40.94 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -7.38 Total: -4.60 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -0.72 Total: -7.26 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -1.12 Total: -25.12 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.77 -8.16 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829816074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.052 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds