Wall clock time and date at job start Tue Mar 31 2020 06:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.29445 * 117.96330 * 2 1 4 4 C 1.50697 * 117.96409 * 359.55839 * 3 2 1 5 5 C 1.50071 * 124.07588 * 179.53386 * 3 2 1 6 6 C 1.53033 * 110.14670 * 17.12933 * 5 3 2 7 7 H 1.08994 * 109.63586 * 70.46437 * 6 5 3 8 8 C 1.50696 * 109.64077 * 190.88051 * 6 5 3 9 9 O 1.20830 * 120.00137 * 120.00478 * 8 6 5 10 10 O 1.34234 * 120.00305 * 300.00462 * 8 6 5 11 11 C 1.45196 * 117.00292 * 180.02562 * 10 8 6 12 12 C 1.52999 * 109.47393 * 179.97438 * 11 10 8 13 13 O 1.42897 * 109.47240 * 64.99168 * 12 11 10 14 14 C 1.42900 * 113.99817 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.47041 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99939 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00300 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99420 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00199 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47446 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46982 * 120.00050 * 19 17 15 22 22 H 1.48496 * 109.47499 * 239.99888 * 19 17 15 23 23 C 1.53391 * 108.43980 * 310.56623 * 6 5 3 24 24 C 1.50071 * 117.96313 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47415 * 54.87825 * 1 2 3 26 26 H 1.09000 * 109.47236 * 174.88177 * 1 2 3 27 27 H 1.09003 * 109.47039 * 294.88279 * 1 2 3 28 28 H 1.09001 * 109.47110 * 275.22773 * 4 3 2 29 29 H 1.09002 * 109.47149 * 35.22265 * 4 3 2 30 30 H 1.08993 * 109.47456 * 155.22506 * 4 3 2 31 31 H 1.09000 * 109.35603 * 256.92600 * 5 3 2 32 32 H 1.08994 * 109.25124 * 137.26898 * 5 3 2 33 33 H 1.08990 * 109.47384 * 59.99427 * 11 10 8 34 34 H 1.09003 * 109.46818 * 299.99729 * 11 10 8 35 35 H 1.08996 * 109.47235 * 184.99984 * 12 11 10 36 36 H 1.09005 * 109.46934 * 304.99691 * 12 11 10 37 37 H 1.09001 * 109.47547 * 300.00109 * 14 13 12 38 38 H 1.08994 * 109.47234 * 60.00652 * 14 13 12 39 39 H 0.97005 * 119.99782 * 180.02562 * 18 17 15 40 40 H 1.08989 * 109.64068 * 187.11740 * 23 6 5 41 41 H 1.08997 * 109.64341 * 307.75152 * 23 6 5 42 42 H 1.09005 * 109.35514 * 317.33479 * 24 2 1 43 43 H 1.08999 * 109.35879 * 76.91987 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 1.2697 2.3916 -0.0103 5 6 3.6060 1.3031 0.0101 6 6 4.2793 -0.0075 -0.4032 7 1 4.1086 -0.1882 -1.4644 8 6 5.7599 0.0773 -0.1355 9 8 6.2827 -0.7056 0.6219 10 8 6.4980 1.0224 -0.7386 11 6 7.9176 1.0443 -0.4343 12 6 8.5879 2.1805 -1.2092 13 8 8.0828 3.4349 -0.7475 14 6 8.6468 4.5682 -1.4106 15 6 8.0461 5.8303 -0.8471 16 1 7.3078 5.7727 -0.0610 17 6 8.4390 7.0584 -1.3352 18 7 9.3377 7.1284 -2.2929 19 14 7.6939 8.6227 -0.6373 20 1 6.7138 8.2742 0.4224 21 1 8.7691 9.4674 -0.0580 22 1 7.0070 9.3702 -1.7211 23 6 3.6704 -1.1474 0.4230 24 6 2.2106 -1.3255 -0.0006 25 1 -0.3634 0.5912 -0.8405 26 1 -0.3634 -1.0236 -0.0917 27 1 -0.3633 0.4324 0.9323 28 1 0.9955 2.6364 -1.0364 29 1 0.3667 2.2243 0.5769 30 1 1.8360 3.2168 0.4212 31 1 3.9333 1.5767 1.0132 32 1 3.8879 2.0903 -0.6891 33 1 8.3658 0.0939 -0.7234 34 1 8.0574 1.2015 0.6353 35 1 9.6656 2.1421 -1.0507 36 1 8.3730 2.0714 -2.2723 37 1 9.7258 4.5796 -1.2565 38 1 8.4327 4.5085 -2.4776 39 1 9.6144 7.9925 -2.6361 40 1 4.2209 -2.0694 0.2368 41 1 3.7167 -0.8970 1.4828 42 1 1.7121 -1.9995 0.6961 43 1 2.1745 -1.7533 -1.0025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829816075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:16 Heat of formation + Delta-G solvation = -148.135416 kcal Electronic energy + Delta-G solvation = -22093.468892 eV Core-core repulsion = 18717.085297 eV Total energy + Delta-G solvation = -3376.383594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66032 -38.94158 -37.04849 -36.01007 -33.81354 -32.77697 -31.99851 -30.11174 -27.81464 -26.92373 -26.58941 -23.59132 -22.99931 -22.37646 -21.76521 -20.21080 -17.71405 -17.25353 -16.64956 -16.26630 -16.19292 -15.30980 -15.06355 -14.90558 -14.51955 -14.45510 -14.11589 -13.97354 -13.73326 -13.24128 -12.77297 -12.60703 -12.50703 -12.30391 -12.11528 -11.99272 -11.91285 -11.85096 -11.43027 -11.15441 -10.95053 -10.89493 -10.87922 -10.73718 -10.51762 -10.34919 -10.14944 -10.01496 -9.12212 -8.88611 -8.65057 -8.22114 -6.12902 -4.14454 2.04615 2.29875 2.80965 3.28242 3.34753 3.41273 4.31824 4.35678 4.45236 4.67388 4.72727 4.83480 4.95472 5.05952 5.20059 5.23850 5.24550 5.25261 5.27002 5.34721 5.43072 5.46944 5.56841 5.66630 5.69154 5.75996 5.78026 5.87145 5.91465 5.92725 5.97161 5.98045 6.09060 6.11002 6.50497 6.63881 6.93313 7.04905 7.39098 7.77491 7.88782 8.11795 8.51799 8.98523 9.50402 10.98750 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.003712 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.103289 B = 7541.145450 C = 9056.676818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.141 4.141 3 C -0.118 4.118 4 C -0.124 4.124 5 C -0.074 4.074 6 C -0.078 4.078 7 H 0.109 0.891 8 C 0.465 3.535 9 O -0.517 6.517 10 O -0.339 6.339 11 C 0.073 3.927 12 C 0.062 3.938 13 O -0.390 6.390 14 C 0.194 3.806 15 C -0.514 4.514 16 H 0.067 0.933 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.103 4.103 24 C -0.077 4.077 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.264 0.736 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 -16.261 2.652 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.141 4.141 3 C -0.118 4.118 4 C -0.181 4.181 5 C -0.111 4.111 6 C -0.097 4.097 7 H 0.127 0.873 8 C 0.308 3.692 9 O -0.406 6.406 10 O -0.254 6.254 11 C 0.000 4.000 12 C -0.016 4.016 13 O -0.310 6.310 14 C 0.120 3.880 15 C -0.552 4.552 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.140 4.140 24 C -0.114 4.114 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.498 -16.309 2.907 22.014 hybrid contribution 0.200 0.837 0.044 0.862 sum -14.298 -15.472 2.951 21.273 Atomic orbital electron populations 1.20901 0.92664 1.01912 1.01787 1.20662 0.95623 0.94286 1.03527 1.20629 0.94761 0.94923 1.01496 1.20987 0.99147 0.95801 1.02141 1.20357 0.91570 0.95956 1.03238 1.21113 0.86959 0.98442 1.03214 0.87285 1.23672 0.90466 0.77779 0.77304 1.90630 1.73894 1.41206 1.34834 1.86608 1.22635 1.51633 1.64567 1.23206 0.76856 0.98488 1.01489 1.22317 0.96250 0.85604 0.97411 1.87915 1.66784 1.13005 1.63332 1.20241 0.93249 0.82304 0.92228 1.21088 1.23982 0.89412 1.20713 0.91455 1.24951 0.95195 0.99309 0.95069 1.69974 1.31192 1.25346 1.27285 0.86279 0.79030 0.82237 0.78950 1.19456 1.20839 1.20802 1.21517 0.94964 0.97484 1.00054 1.20389 0.94242 0.94939 1.01840 0.91812 0.92471 0.91695 0.91318 0.91681 0.91672 0.90176 0.88891 0.90521 0.90556 0.92007 0.93222 0.97635 0.97499 0.92688 0.90549 0.90840 0.90656 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 8.54 36.00 0.31 -0.56 16 2 C -0.14 -1.31 5.84 -100.94 -0.59 -1.90 16 3 C -0.12 -1.23 5.84 -100.94 -0.59 -1.82 16 4 C -0.12 -1.17 8.98 36.00 0.32 -0.84 16 5 C -0.07 -0.89 5.00 -28.17 -0.14 -1.03 16 6 C -0.08 -0.92 2.69 -91.55 -0.25 -1.16 16 7 H 0.11 1.14 8.13 -51.93 -0.42 0.72 16 8 C 0.46 7.00 7.24 36.00 0.26 7.26 16 9 O -0.52 -8.70 15.65 -18.75 -0.29 -8.99 16 10 O -0.34 -5.73 10.12 -42.04 -0.43 -6.15 16 11 C 0.07 1.19 5.84 37.16 0.22 1.40 16 12 C 0.06 1.14 6.33 37.16 0.24 1.38 16 13 O -0.39 -9.49 10.30 -38.80 -0.40 -9.89 16 14 C 0.19 5.31 5.69 36.01 0.20 5.52 16 15 C -0.51 -15.14 9.43 -34.44 -0.32 -15.47 16 16 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 19 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.10 -1.06 4.70 -26.51 -0.12 -1.18 16 24 C -0.08 -0.65 5.69 -28.17 -0.16 -0.81 16 25 H 0.06 0.46 7.69 -51.93 -0.40 0.06 16 26 H 0.06 0.37 7.93 -51.93 -0.41 -0.04 16 27 H 0.06 0.46 7.37 -51.93 -0.38 0.08 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.53 6.32 -51.93 -0.33 0.20 16 30 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 31 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 34 H 0.08 1.27 8.13 -51.93 -0.42 0.84 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 41 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 354.57 15.07 5.34 5.34 Total: -1.00 -32.53 354.57 -8.17 -40.70 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -7.39 Total: -3.99 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.72 Total: -7.71 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -1.12 Total: -25.04 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.53 -8.17 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829816075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.440 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds