Wall clock time and date at job start Tue Mar 31 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46971 * 2 1 4 4 O 1.42898 * 109.47033 * 179.97438 * 3 2 1 5 5 N 1.41596 * 113.99950 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00056 * 179.97438 * 5 4 3 7 7 O 1.21593 * 119.99953 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99726 * 180.27729 * 6 5 4 9 9 C 1.40196 * 119.99786 * 179.72659 * 8 6 5 10 10 C 1.40403 * 125.97362 * 359.72037 * 9 8 6 11 11 C 1.35241 * 107.87032 * 179.83093 * 10 9 8 12 12 C 1.50704 * 126.07402 * 180.16205 * 11 10 9 13 13 N 1.34964 * 107.85500 * 0.42559 * 11 10 9 14 14 C 1.46503 * 125.97580 * 179.71183 * 13 11 10 15 15 C 1.50699 * 109.47232 * 270.00070 * 14 13 11 16 16 H 1.08004 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00303 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99755 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99889 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47357 * 90.00225 * 19 17 15 21 21 H 1.48502 * 109.46910 * 210.00009 * 19 17 15 22 22 H 1.48502 * 109.47436 * 330.00267 * 19 17 15 23 23 N 1.31207 * 125.97268 * 180.02562 * 9 8 6 24 24 H 1.09008 * 109.46872 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47158 * 299.99740 * 1 2 3 26 26 H 1.09003 * 109.47148 * 60.00287 * 1 2 3 27 27 H 1.09003 * 109.47384 * 239.99874 * 2 1 3 28 28 H 1.09003 * 109.47148 * 119.99713 * 2 1 3 29 29 H 1.08997 * 109.46967 * 60.00143 * 3 2 1 30 30 H 1.09003 * 109.46950 * 299.99834 * 3 2 1 31 31 H 0.97000 * 120.00207 * 0.02562 * 5 4 3 32 32 H 0.97000 * 120.00483 * 359.73178 * 8 6 5 33 33 H 1.08001 * 126.06561 * 359.97438 * 10 9 8 34 34 H 1.09000 * 109.46414 * 270.31468 * 12 11 10 35 35 H 1.08994 * 109.47042 * 30.31368 * 12 11 10 36 36 H 1.08993 * 109.47184 * 150.31712 * 12 11 10 37 37 H 1.09001 * 109.47222 * 29.99739 * 14 13 11 38 38 H 1.08997 * 109.47398 * 150.00005 * 14 13 11 39 39 H 0.97000 * 119.99662 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4426 0.0006 5 7 4.0448 2.7361 0.0001 6 6 5.3852 2.8770 0.0011 7 8 6.1000 1.8933 0.0020 8 7 5.9333 4.1083 0.0062 9 6 7.3276 4.2549 0.0131 10 6 8.2666 3.2111 0.0208 11 6 9.5011 3.7634 0.0219 12 6 10.8085 3.0140 0.0259 13 7 9.3541 5.1050 0.0247 14 6 10.4390 6.0896 0.0326 15 6 10.8040 6.4235 1.4561 16 1 10.2804 5.9494 2.2732 17 6 11.8069 7.3334 1.7154 18 7 12.4453 7.9096 0.7205 19 14 12.2587 7.7478 3.4800 20 1 13.3188 6.8204 3.9504 21 1 12.7573 9.1449 3.5482 22 1 11.0592 7.6074 4.3441 23 7 7.9830 5.3915 0.0190 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.4747 3.5209 -0.0003 32 1 5.3632 4.8931 0.0053 33 1 8.0428 2.1545 0.0230 34 1 11.1189 2.8307 1.0546 35 1 10.6835 2.0625 -0.4909 36 1 11.5686 3.6067 -0.4828 37 1 11.3087 5.6760 -0.4780 38 1 10.1126 6.9941 -0.4805 39 1 13.1506 8.5500 0.9030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831599320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:35 Heat of formation + Delta-G solvation = 52.570536 kcal Electronic energy + Delta-G solvation = -21313.721166 eV Core-core repulsion = 17874.793243 eV Total energy + Delta-G solvation = -3438.927924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72484 -39.52926 -37.82122 -34.79340 -34.37491 -33.40364 -32.04015 -31.12594 -30.49829 -26.72888 -26.38092 -26.19353 -23.20563 -22.24965 -21.75563 -19.95080 -19.61620 -18.42198 -17.53329 -16.66771 -16.52903 -15.97040 -15.35922 -15.28233 -14.96744 -14.36506 -14.24308 -14.02712 -13.80594 -13.09352 -12.95540 -12.52913 -12.45454 -12.25999 -12.24705 -11.83981 -11.65016 -11.61301 -11.37609 -11.11801 -10.99428 -10.81327 -10.44433 -10.24182 -10.01544 -9.66745 -9.52618 -9.08478 -8.62623 -7.91012 -7.40453 -6.23754 -4.31068 1.32799 2.65143 3.10093 3.22646 3.23849 3.29024 3.35821 3.82689 4.01336 4.27020 4.34116 4.43932 4.47546 4.79072 4.96804 5.05123 5.10018 5.20080 5.41095 5.52141 5.61460 5.71091 5.74823 5.94620 6.12947 6.17070 6.47254 6.48308 6.54660 6.67451 6.98886 7.08212 7.10913 7.49934 7.69195 7.88586 7.91443 8.08505 8.59362 8.67690 8.77383 9.35071 10.83469 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.035508 B = 0.002790 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.358502 B =10033.213475 C =10309.903840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.029 3.971 4 O -0.124 6.124 5 N -0.615 5.615 6 C 0.730 3.270 7 O -0.546 6.546 8 N -0.635 5.635 9 C 0.284 3.716 10 C -0.289 4.289 11 C 0.092 3.908 12 C -0.084 4.084 13 N -0.317 5.317 14 C 0.259 3.741 15 C -0.535 4.535 16 H 0.064 0.936 17 C 0.065 3.935 18 N -0.892 5.892 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.272 1.272 23 N -0.321 5.321 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.404 0.596 32 H 0.407 0.593 33 H 0.161 0.839 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.394 -11.118 -2.527 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.048 4.048 4 O -0.127 6.127 5 N -0.320 5.320 6 C 0.429 3.571 7 O -0.419 6.419 8 N -0.289 5.289 9 C 0.031 3.969 10 C -0.320 4.320 11 C -0.039 4.039 12 C -0.142 4.142 13 N -0.100 5.100 14 C 0.141 3.859 15 C -0.573 4.573 16 H 0.083 0.917 17 C -0.138 4.138 18 N -0.530 5.530 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.197 1.197 23 N -0.152 5.152 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.243 0.757 32 H 0.242 0.758 33 H 0.179 0.821 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.508 -10.750 -2.577 21.559 hybrid contribution -0.641 0.483 0.965 1.255 sum -19.149 -10.268 -1.612 21.788 Atomic orbital electron populations 1.21696 0.93992 1.02656 1.02226 1.21412 0.96064 0.93959 1.04188 1.23137 0.80581 0.99672 1.01445 1.90587 1.19724 1.04868 1.97525 1.45932 1.03954 0.98805 1.83292 1.14923 0.80071 0.83500 0.78595 1.90900 1.58887 1.37007 1.55073 1.41012 1.03992 1.06638 1.77227 1.18542 0.82081 0.93220 1.03025 1.21254 0.89062 1.00526 1.21127 1.21057 0.96992 0.85021 1.00848 1.20334 0.91929 0.98756 1.03188 1.48970 1.03462 1.05119 1.52444 1.19687 0.80922 0.86385 0.98908 1.21328 1.19129 1.25468 0.91395 0.91738 1.24929 0.95549 0.95244 0.98127 1.69920 1.23645 1.28307 1.31138 0.86353 0.78809 0.77704 0.83800 1.20302 1.20917 1.19722 1.77249 0.88785 1.19311 1.29862 0.91583 0.92324 0.92327 0.90502 0.90491 0.91966 0.91970 0.75690 0.75799 0.82138 0.90408 0.90766 0.90868 0.92752 0.93002 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.12 -0.74 6.30 -26.73 -0.17 -0.91 16 3 C 0.03 0.21 6.23 37.16 0.23 0.44 16 4 O -0.12 -1.51 11.11 -29.62 -0.33 -1.84 16 5 N -0.61 -7.15 6.39 27.64 0.18 -6.97 16 6 C 0.73 11.68 8.68 -86.92 -0.75 10.93 16 7 O -0.55 -11.03 13.88 -12.86 -0.18 -11.20 16 8 N -0.64 -10.01 5.46 -15.51 -0.08 -10.09 16 9 C 0.28 5.87 8.11 -154.36 -1.25 4.62 16 10 C -0.29 -6.11 9.52 -39.83 -0.38 -6.49 16 11 C 0.09 1.97 6.93 -82.28 -0.57 1.40 16 12 C -0.08 -1.46 10.11 36.01 0.36 -1.09 16 13 N -0.32 -7.58 3.59 -58.32 -0.21 -7.79 16 14 C 0.26 6.64 5.99 -5.19 -0.03 6.61 16 15 C -0.53 -14.76 9.39 -34.44 -0.32 -15.08 16 16 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 19 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 N -0.32 -7.42 12.59 31.44 0.40 -7.03 16 24 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.40 2.94 8.56 -40.82 -0.35 2.59 16 32 H 0.41 4.86 8.84 -40.82 -0.36 4.50 16 33 H 0.16 3.39 5.91 -52.49 -0.31 3.08 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.27 7.07 -51.93 -0.37 0.90 16 37 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 38 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -34.37 338.74 -7.55 -41.91 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.53 Total: 4.28 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.61 Total: 1.82 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 1.01 Total: -56.21 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.51 Total: -13.04 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.37 -7.55 -41.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831599320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.484 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds