Wall clock time and date at job start Tue Mar 31 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46971 * 2 1 4 4 O 1.42898 * 109.47033 * 179.97438 * 3 2 1 5 5 N 1.41596 * 113.99950 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00056 * 179.97438 * 5 4 3 7 7 O 1.21593 * 119.99953 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99726 * 180.27729 * 6 5 4 9 9 C 1.40196 * 119.99786 * 179.72659 * 8 6 5 10 10 C 1.40403 * 125.97362 * 359.72037 * 9 8 6 11 11 C 1.35241 * 107.87032 * 179.83093 * 10 9 8 12 12 C 1.50704 * 126.07402 * 180.16205 * 11 10 9 13 13 N 1.34964 * 107.85500 * 0.42559 * 11 10 9 14 14 C 1.46503 * 125.97580 * 179.71183 * 13 11 10 15 15 C 1.50699 * 109.47232 * 270.00070 * 14 13 11 16 16 H 1.08004 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00303 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99755 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99889 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47357 * 90.00225 * 19 17 15 21 21 H 1.48502 * 109.46910 * 210.00009 * 19 17 15 22 22 H 1.48502 * 109.47436 * 330.00267 * 19 17 15 23 23 N 1.31207 * 125.97268 * 180.02562 * 9 8 6 24 24 H 1.09008 * 109.46872 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47158 * 299.99740 * 1 2 3 26 26 H 1.09003 * 109.47148 * 60.00287 * 1 2 3 27 27 H 1.09003 * 109.47384 * 239.99874 * 2 1 3 28 28 H 1.09003 * 109.47148 * 119.99713 * 2 1 3 29 29 H 1.08997 * 109.46967 * 60.00143 * 3 2 1 30 30 H 1.09003 * 109.46950 * 299.99834 * 3 2 1 31 31 H 0.97000 * 120.00207 * 0.02562 * 5 4 3 32 32 H 0.97000 * 120.00483 * 359.73178 * 8 6 5 33 33 H 1.08001 * 126.06561 * 359.97438 * 10 9 8 34 34 H 1.09000 * 109.46414 * 270.31468 * 12 11 10 35 35 H 1.08994 * 109.47042 * 30.31368 * 12 11 10 36 36 H 1.08993 * 109.47184 * 150.31712 * 12 11 10 37 37 H 1.09001 * 109.47222 * 29.99739 * 14 13 11 38 38 H 1.08997 * 109.47398 * 150.00005 * 14 13 11 39 39 H 0.97000 * 119.99662 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4426 0.0006 5 7 4.0448 2.7361 0.0001 6 6 5.3852 2.8770 0.0011 7 8 6.1000 1.8933 0.0020 8 7 5.9333 4.1083 0.0062 9 6 7.3276 4.2549 0.0131 10 6 8.2666 3.2111 0.0208 11 6 9.5011 3.7634 0.0219 12 6 10.8085 3.0140 0.0259 13 7 9.3541 5.1050 0.0247 14 6 10.4390 6.0896 0.0326 15 6 10.8040 6.4235 1.4561 16 1 10.2804 5.9494 2.2732 17 6 11.8069 7.3334 1.7154 18 7 12.4453 7.9096 0.7205 19 14 12.2587 7.7478 3.4800 20 1 13.3188 6.8204 3.9504 21 1 12.7573 9.1449 3.5482 22 1 11.0592 7.6074 4.3441 23 7 7.9830 5.3915 0.0190 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.4747 3.5209 -0.0003 32 1 5.3632 4.8931 0.0053 33 1 8.0428 2.1545 0.0230 34 1 11.1189 2.8307 1.0546 35 1 10.6835 2.0625 -0.4909 36 1 11.5686 3.6067 -0.4828 37 1 11.3087 5.6760 -0.4780 38 1 10.1126 6.9941 -0.4805 39 1 13.1506 8.5500 0.9030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831599320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:34 Heat of formation + Delta-G solvation = 29.989850 kcal Electronic energy + Delta-G solvation = -21314.700338 eV Core-core repulsion = 17874.793243 eV Total energy + Delta-G solvation = -3439.907096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.31468 -40.86816 -38.73414 -36.31541 -35.37346 -35.01800 -33.41031 -32.67382 -31.99841 -28.51990 -27.86285 -26.95615 -25.05964 -23.39629 -22.60500 -21.39541 -21.13858 -19.51215 -18.87320 -18.68269 -17.54515 -17.30017 -16.89701 -16.53883 -16.29965 -15.93745 -15.69630 -15.14274 -14.70832 -14.60374 -14.28877 -13.79066 -13.69329 -13.59901 -13.51388 -13.13555 -13.00881 -12.84294 -12.64219 -12.46736 -12.24157 -12.11601 -12.09018 -11.60442 -11.59520 -11.37969 -11.21393 -10.71061 -10.11141 -9.56949 -9.09829 -8.30667 -6.47881 0.25181 1.02117 1.39598 1.40176 1.51154 1.62679 1.75020 2.32668 2.35598 2.69063 2.99107 3.51702 3.85171 3.95463 3.96006 4.17410 4.30558 4.44260 4.53827 4.56350 4.71512 4.74796 4.79201 4.91880 4.97388 5.02279 5.12773 5.16114 5.17858 5.23427 5.33331 5.50627 5.56277 5.83503 5.89827 5.95451 6.27874 6.61249 6.67034 7.07860 7.22789 7.38525 8.75191 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.035508 B = 0.002790 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.358502 B =10033.213475 C =10309.903840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.023 3.977 4 O -0.152 6.152 5 N -0.592 5.592 6 C 0.729 3.271 7 O -0.590 6.590 8 N -0.622 5.622 9 C 0.295 3.705 10 C -0.299 4.299 11 C 0.089 3.911 12 C -0.082 4.082 13 N -0.342 5.342 14 C 0.275 3.725 15 C -0.552 4.552 16 H 0.049 0.951 17 C 0.022 3.978 18 N -0.918 5.918 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.276 1.276 23 N -0.353 5.353 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.426 0.574 32 H 0.426 0.574 33 H 0.164 0.836 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.026 0.974 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.719 -11.577 -1.823 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.054 4.054 4 O -0.156 6.156 5 N -0.298 5.298 6 C 0.429 3.571 7 O -0.466 6.466 8 N -0.278 5.278 9 C 0.040 3.960 10 C -0.330 4.330 11 C -0.041 4.041 12 C -0.140 4.140 13 N -0.124 5.124 14 C 0.156 3.844 15 C -0.590 4.590 16 H 0.068 0.932 17 C -0.179 4.179 18 N -0.556 5.556 19 Si 0.795 3.205 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.201 1.201 23 N -0.184 5.184 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.270 0.730 32 H 0.264 0.736 33 H 0.181 0.819 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.916 -11.189 -1.883 22.921 hybrid contribution -0.400 0.540 0.701 0.971 sum -20.316 -10.649 -1.182 22.968 Atomic orbital electron populations 1.21677 0.92208 1.03278 1.02919 1.21455 0.97426 0.93233 1.03476 1.23461 0.78096 1.00648 1.03155 1.90595 1.22563 1.04753 1.97665 1.45550 1.02848 1.00048 1.81344 1.15009 0.81174 0.82702 0.78228 1.90864 1.60430 1.38303 1.57018 1.40883 1.02389 1.07721 1.76799 1.18787 0.84016 0.92394 1.00817 1.21401 0.89247 1.00738 1.21618 1.21713 0.98761 0.84260 0.99365 1.20473 0.89932 0.99618 1.03993 1.48781 1.03476 1.05630 1.54554 1.19267 0.81411 0.85945 0.97781 1.21438 1.19620 1.26138 0.91794 0.93224 1.25724 0.95173 0.94772 1.02212 1.70001 1.23953 1.28574 1.33074 0.85358 0.78469 0.77983 0.78680 1.19026 1.19943 1.20098 1.77173 0.88772 1.20600 1.31843 0.91058 0.91658 0.91578 0.91220 0.91315 0.90272 0.90137 0.72989 0.73592 0.81855 0.89768 0.87664 0.91125 0.92905 0.95560 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.91 71.98 0.71 -0.23 16 2 C -0.12 -1.30 6.30 30.60 0.19 -1.11 16 3 C 0.02 0.28 6.23 71.98 0.45 0.73 16 4 O -0.15 -3.47 11.11 -21.42 -0.24 -3.71 16 5 N -0.59 -12.66 6.39 -184.74 -1.18 -13.84 16 6 C 0.73 22.57 8.68 179.05 1.55 24.13 16 7 O -0.59 -23.61 13.88 13.34 0.19 -23.43 16 8 N -0.62 -19.01 5.46 -321.23 -1.75 -20.76 16 9 C 0.29 12.13 8.11 133.31 1.08 13.21 16 10 C -0.30 -12.64 9.52 22.11 0.21 -12.43 16 11 C 0.09 3.83 6.93 41.39 0.29 4.12 16 12 C -0.08 -2.80 10.11 71.24 0.72 -2.08 16 13 N -0.34 -16.63 3.59 -338.44 -1.22 -17.85 16 14 C 0.27 14.52 5.99 85.63 0.51 15.03 16 15 C -0.55 -30.93 9.39 25.60 0.24 -30.69 16 16 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 17 C 0.02 1.21 5.46 84.66 0.46 1.67 16 18 N -0.92 -51.74 13.29 21.45 0.28 -51.46 16 19 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 N -0.35 -16.54 12.59 -54.43 -0.69 -17.22 16 24 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 25 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.43 5.07 8.56 -92.71 -0.79 4.28 16 32 H 0.43 9.52 8.84 -92.71 -0.82 8.70 16 33 H 0.16 6.87 5.91 -2.91 -0.02 6.85 16 34 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.10 2.88 8.14 -2.39 -0.02 2.87 16 36 H 0.07 2.43 7.07 -2.39 -0.02 2.41 16 37 H 0.05 2.76 7.04 -2.39 -0.02 2.74 16 38 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -74.52 338.74 3.32 -71.20 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -0.53 Total: 19.57 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.42 Total: 12.36 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -4.55 Total: -121.12 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.05 Total: -27.14 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -74.52 3.32 -71.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831599320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.195 kcal (2) G-P(sol) polarization free energy of solvation -74.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds