Wall clock time and date at job start Tue Mar 31 2020 05:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47143 * 2 1 4 4 C 1.52996 * 109.47551 * 119.99973 * 2 1 3 5 5 N 1.46491 * 109.47397 * 174.89828 * 4 2 1 6 6 N 1.40444 * 126.82478 * 85.19430 * 5 4 2 7 7 C 1.30717 * 106.79384 * 180.02562 * 6 5 4 8 8 N 1.33244 * 108.94828 * 0.23981 * 7 6 5 9 9 C 1.30833 * 109.82318 * 359.58949 * 8 7 6 10 10 C 1.50707 * 125.95817 * 180.11923 * 9 8 7 11 11 N 1.46501 * 109.46543 * 84.25895 * 10 9 8 12 12 C 1.36939 * 120.00100 * 91.40237 * 11 10 9 13 13 H 1.08002 * 119.99852 * 346.75678 * 12 11 10 14 14 C 1.38820 * 120.00002 * 166.76172 * 12 11 10 15 15 N 1.31612 * 119.99764 * 359.53997 * 14 12 11 16 16 Si 1.86791 * 119.99870 * 179.53812 * 14 12 11 17 17 H 1.48498 * 109.47116 * 90.00157 * 16 14 12 18 18 H 1.48498 * 109.47166 * 210.00045 * 16 14 12 19 19 H 1.48499 * 109.47645 * 330.00108 * 16 14 12 20 20 C 1.46502 * 120.00011 * 271.39518 * 11 10 9 21 21 C 1.50701 * 109.47369 * 264.53817 * 20 11 10 22 22 O 1.20821 * 119.99946 * 5.61472 * 21 20 11 23 23 O 1.34223 * 119.99912 * 185.61864 * 21 20 11 24 24 H 1.09007 * 109.47071 * 299.99919 * 1 2 3 25 25 H 1.09002 * 109.47364 * 60.00006 * 1 2 3 26 26 H 1.08994 * 109.47144 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47138 * 240.00267 * 2 1 3 28 28 H 1.09002 * 109.46985 * 300.00226 * 3 2 1 29 29 H 1.08998 * 109.46885 * 60.00112 * 3 2 1 30 30 H 1.08991 * 109.47210 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46972 * 54.89275 * 4 2 1 32 32 H 1.09005 * 109.47121 * 294.89963 * 4 2 1 33 33 H 1.07997 * 125.52902 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47126 * 204.25113 * 10 9 8 35 35 H 1.08993 * 109.47078 * 324.26073 * 10 9 8 36 36 H 0.97003 * 120.00058 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.46941 * 24.53571 * 20 11 10 38 38 H 1.09000 * 109.46933 * 144.53444 * 20 11 10 39 39 H 0.96704 * 117.00054 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4998 -0.8285 1.1893 6 7 4.4324 0.1375 1.6011 7 6 5.6189 -0.3614 1.3727 8 7 5.4826 -1.5751 0.8398 9 6 4.2130 -1.8709 0.7289 10 6 3.6484 -3.1536 0.1748 11 7 3.6121 -4.1677 1.2315 12 6 2.4919 -4.3095 2.0063 13 1 1.7246 -3.5496 1.9903 14 6 2.3426 -5.4298 2.8123 15 7 3.2735 -6.3601 2.8249 16 14 0.8206 -5.6170 3.8788 17 1 -0.2337 -6.3321 3.1157 18 1 1.1626 -6.3936 5.0975 19 1 0.3228 -4.2741 4.2712 20 6 4.7742 -5.0301 1.4593 21 6 4.5892 -6.3288 0.7174 22 8 3.6397 -6.4761 -0.0150 23 8 5.4792 -7.3218 0.8705 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6040 -1.7191 1.2961 32 1 1.7533 -0.1573 2.1369 33 1 6.5574 0.1318 1.5783 34 1 2.6379 -2.9766 -0.1936 35 1 4.2774 -3.5039 -0.6435 36 1 3.1695 -7.1428 3.3883 37 1 5.6735 -4.5307 1.0988 38 1 4.8734 -5.2319 2.5259 39 1 5.3181 -8.1361 0.3743 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833495847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:25 Heat of formation + Delta-G solvation = 18.278670 kcal Electronic energy + Delta-G solvation = -23285.169296 eV Core-core repulsion = 19844.754366 eV Total energy + Delta-G solvation = -3440.414930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.53417 -38.61535 -36.59374 -35.90104 -34.32991 -32.34637 -31.98256 -30.37176 -27.71788 -27.17952 -26.73841 -25.77285 -22.69307 -21.54471 -20.67378 -20.17067 -19.40983 -17.01092 -16.65142 -16.56366 -15.67206 -15.30277 -15.03507 -14.93479 -14.07345 -14.05748 -13.77353 -13.64921 -13.18084 -13.14456 -13.10329 -12.38402 -12.13686 -11.81105 -11.63288 -11.48179 -11.16003 -11.11288 -11.02136 -10.98314 -10.74378 -10.52817 -10.25439 -10.13599 -9.99252 -9.43231 -9.27270 -9.15585 -8.94516 -8.70878 -7.35254 -6.01706 -3.48096 2.16838 2.80741 3.25946 3.29758 3.32999 3.49943 3.99762 4.26371 4.57880 4.70930 4.76253 4.80455 4.96274 5.18666 5.24229 5.33070 5.46136 5.48831 5.58046 5.65944 5.73981 5.82252 5.89646 6.01942 6.20043 6.23424 6.29294 6.30770 6.52145 6.83108 6.99398 7.01776 7.23101 7.38543 7.44655 7.96264 8.03315 8.70245 8.86533 9.44636 9.58529 9.90101 11.02816 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.006643 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.729914 B = 4214.114871 C = 5178.664753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.130 3.870 5 N -0.367 5.367 6 N -0.338 5.338 7 C 0.187 3.813 8 N -0.550 5.550 9 C 0.283 3.717 10 C 0.217 3.783 11 N -0.559 5.559 12 C -0.248 4.248 13 H 0.079 0.921 14 C 0.004 3.996 15 N -0.915 5.915 16 Si 0.923 3.077 17 H -0.285 1.285 18 H -0.288 1.288 19 H -0.279 1.279 20 C 0.191 3.809 21 C 0.493 3.507 22 O -0.542 6.542 23 O -0.538 6.538 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.206 0.794 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.262 0.738 37 H 0.055 0.945 38 H 0.127 0.873 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 9.315 -4.252 10.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.201 4.201 4 C 0.008 3.992 5 N -0.157 5.157 6 N -0.167 5.167 7 C -0.116 4.116 8 N -0.278 5.278 9 C 0.004 3.996 10 C 0.085 3.915 11 N -0.278 5.278 12 C -0.376 4.376 13 H 0.097 0.903 14 C -0.192 4.192 15 N -0.562 5.562 16 Si 0.752 3.248 17 H -0.212 1.212 18 H -0.214 1.214 19 H -0.205 1.205 20 C 0.063 3.937 21 C 0.335 3.665 22 O -0.430 6.430 23 O -0.347 6.347 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.223 0.777 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.144 0.856 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.935 10.003 -3.871 10.766 hybrid contribution -1.098 -0.923 0.378 1.484 sum -2.034 9.080 -3.493 9.939 Atomic orbital electron populations 1.21772 0.93866 1.02523 1.02092 1.21508 0.96395 0.97245 0.97932 1.21811 1.02047 0.94998 1.01209 1.21950 0.74610 1.03459 0.99208 1.50251 1.07017 1.11988 1.46401 1.77847 0.99069 1.14778 1.24967 1.25773 0.96691 0.91463 0.97679 1.70481 1.17212 1.15553 1.24592 1.26427 0.87292 0.92337 0.93544 1.19373 0.99304 0.82293 0.90519 1.43755 1.14574 1.33864 1.35610 1.19311 0.97031 1.03475 1.17788 0.90279 1.24863 0.98471 0.95587 1.00271 1.69534 1.33482 1.11008 1.42226 0.85963 0.81724 0.77792 0.79284 1.21168 1.21373 1.20451 1.20477 0.87430 0.83957 1.01793 1.24764 0.78687 0.86255 0.76799 1.90480 1.30941 1.82222 1.39383 1.84610 1.54366 1.26565 1.69168 0.92392 0.92183 0.91890 0.90644 0.93079 0.92697 0.91914 0.87499 0.89244 0.77715 0.90679 0.90173 0.92713 0.92684 0.85557 0.76680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.19 37.16 0.34 -1.09 16 2 C -0.11 -1.33 3.12 -90.62 -0.28 -1.62 16 3 C -0.14 -1.69 9.02 37.16 0.34 -1.36 16 4 C 0.13 1.89 5.57 -4.05 -0.02 1.87 16 5 N -0.37 -6.37 3.31 -58.34 -0.19 -6.56 16 6 N -0.34 -5.91 11.48 29.29 0.34 -5.57 16 7 C 0.19 3.15 13.03 -91.81 -1.20 1.96 16 8 N -0.55 -10.53 11.19 -11.96 -0.13 -10.67 16 9 C 0.28 5.37 7.57 -155.69 -1.18 4.19 16 10 C 0.22 4.24 5.84 -5.19 -0.03 4.21 16 11 N -0.56 -12.99 2.03 -175.98 -0.36 -13.34 16 12 C -0.25 -6.17 9.72 -15.06 -0.15 -6.31 16 13 H 0.08 1.84 6.17 -52.49 -0.32 1.52 16 14 C 0.00 0.11 5.36 -17.43 -0.09 0.01 16 15 N -0.91 -24.64 8.01 55.49 0.44 -24.20 16 16 Si 0.92 20.90 29.55 -169.99 -5.02 15.87 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 20 C 0.19 4.50 5.60 -5.19 -0.03 4.47 16 21 C 0.49 11.89 5.96 36.01 0.21 12.11 16 22 O -0.54 -14.55 17.11 -18.75 -0.32 -14.87 16 23 O -0.54 -11.24 13.42 -39.24 -0.53 -11.77 16 24 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.88 6.74 -51.93 -0.35 0.53 16 31 H 0.11 1.63 5.70 -51.93 -0.30 1.34 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.21 2.60 8.06 -52.49 -0.42 2.18 16 34 H 0.08 1.36 7.26 -51.93 -0.38 0.98 16 35 H 0.08 1.53 8.08 -51.93 -0.42 1.11 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.06 1.20 8.03 -51.93 -0.42 0.78 16 38 H 0.13 3.26 6.21 -51.93 -0.32 2.94 16 39 H 0.38 6.31 9.10 45.56 0.41 6.72 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -31.45 328.08 -7.53 -38.98 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.61 Total: 8.75 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: -2.09 Total: 18.44 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.10 Total: -60.35 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.85 Total: -26.64 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.45 -7.53 -38.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833495847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.257 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds