Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47184 * 2 1 4 4 C 1.50700 * 109.47202 * 239.99798 * 2 1 3 5 5 H 1.08002 * 120.00100 * 274.89981 * 4 2 1 6 6 C 1.37880 * 119.99941 * 94.90451 * 4 2 1 7 7 N 1.31515 * 120.00086 * 183.89537 * 6 4 2 8 8 Si 1.86799 * 120.00148 * 3.88538 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.42591 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.42885 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.43060 * 8 6 4 12 12 N 1.46900 * 109.47308 * 119.99936 * 2 1 3 13 13 C 1.46905 * 111.00101 * 176.04915 * 12 2 1 14 14 C 1.46902 * 110.99962 * 299.99666 * 12 2 1 15 15 C 1.53002 * 109.47438 * 169.99775 * 14 12 2 16 16 C 1.50696 * 109.47456 * 180.02562 * 15 14 12 17 17 C 1.35344 * 126.75565 * 124.71418 * 16 15 14 18 18 N 1.35310 * 106.17870 * 179.85078 * 17 16 15 19 19 C 1.46504 * 125.87172 * 180.11614 * 18 17 16 20 20 C 1.50692 * 109.47039 * 125.32572 * 19 18 17 21 21 O 1.20825 * 120.00323 * 0.02562 * 20 19 18 22 22 O 1.34232 * 120.00015 * 180.02562 * 20 19 18 23 23 N 1.28719 * 108.26228 * 0.42057 * 18 17 16 24 24 N 1.28633 * 110.17791 * 359.72851 * 23 18 17 25 25 H 1.09000 * 109.47001 * 186.77157 * 1 2 3 26 26 H 1.08991 * 109.47541 * 66.76836 * 1 2 3 27 27 H 1.09003 * 109.47235 * 306.75987 * 1 2 3 28 28 H 0.96996 * 120.00229 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47366 * 59.99548 * 13 12 2 30 30 H 1.09000 * 109.46890 * 180.02562 * 13 12 2 31 31 H 1.08997 * 109.46501 * 299.99899 * 13 12 2 32 32 H 1.08998 * 109.47296 * 290.00509 * 14 12 2 33 33 H 1.09005 * 109.46858 * 50.00531 * 14 12 2 34 34 H 1.08999 * 109.46954 * 300.00604 * 15 14 12 35 35 H 1.09004 * 109.46745 * 60.00053 * 15 14 12 36 36 H 1.08006 * 126.90914 * 359.97438 * 17 16 15 37 37 H 1.08995 * 109.47265 * 245.32936 * 19 18 17 38 38 H 1.09004 * 109.46930 * 5.32880 * 19 18 17 39 39 H 0.96696 * 116.99903 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1370 -1.7854 -1.2284 6 6 2.3584 0.0119 -2.3587 7 7 2.7234 -0.6130 -3.4568 8 14 2.2813 1.8780 -2.3277 9 1 3.5499 2.4166 -1.7748 10 1 2.0869 2.3884 -3.7085 11 1 1.1458 2.3124 -1.4749 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7944 1.1870 14 6 1.5487 -0.0263 2.4211 15 6 1.8627 -0.9042 3.6342 16 6 1.3790 -0.2211 4.8874 17 6 0.5327 -0.7307 5.8124 18 7 0.3859 0.2268 6.7572 19 6 -0.4410 0.1242 7.9622 20 6 0.4034 0.4119 9.1768 21 8 1.5755 0.6760 9.0490 22 8 -0.1466 0.3747 10.4007 23 7 1.0926 1.2457 6.4120 24 7 1.6973 1.0106 5.3013 25 1 -0.3633 -1.0205 0.1212 26 1 -0.3634 0.4053 -0.9442 27 1 -0.3634 0.6150 0.8233 28 1 2.9524 -0.1049 -4.2507 29 1 3.9187 0.2052 1.1591 30 1 3.8209 -1.3116 2.0859 31 1 3.8029 -1.3530 0.3067 32 1 2.0519 0.9347 2.5279 33 1 0.4722 0.1324 2.3564 34 1 1.3595 -1.8651 3.5272 35 1 2.9392 -1.0630 3.6989 36 1 0.0694 -1.7062 5.8001 37 1 -1.2555 0.8463 7.9066 38 1 -0.8524 -0.8826 8.0359 39 1 0.4349 0.5658 11.1492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833516417.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = 23.306859 kcal Electronic energy + Delta-G solvation = -21734.515675 eV Core-core repulsion = 18294.318783 eV Total energy + Delta-G solvation = -3440.196892 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.43005 -40.76233 -37.39140 -36.83877 -35.12675 -33.31745 -32.07989 -30.25039 -29.62378 -28.41493 -25.67181 -24.37488 -23.69939 -22.41511 -21.78816 -20.45553 -19.09485 -18.86785 -17.79406 -17.19382 -16.91483 -16.66945 -15.82750 -15.27666 -14.83902 -14.56757 -14.33563 -13.78740 -13.71805 -13.28428 -13.00650 -12.75763 -12.38815 -12.22003 -12.16832 -11.72653 -11.45714 -11.36300 -11.20450 -10.97605 -10.80638 -10.63584 -10.48529 -10.36342 -10.12294 -10.01119 -9.70949 -9.12216 -8.97726 -8.53381 -7.23295 -6.04655 -4.02680 1.26329 1.47258 1.72982 2.44172 2.55334 3.31167 3.39396 3.42749 3.86290 4.25454 4.26324 4.44502 4.46559 4.65948 4.94437 5.17773 5.33373 5.36147 5.55705 5.80607 5.84083 5.90574 6.12264 6.25409 6.27006 6.36190 6.40506 6.52898 6.57977 6.67026 6.75587 6.95426 7.09629 7.17208 7.36617 7.68000 8.07707 8.19746 8.43041 8.71339 9.05681 9.59746 11.08324 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.042977 B = 0.002969 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.353169 B = 9429.749028 C = 9506.898172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.179 3.821 3 H 0.000 1.000 4 C -0.499 4.499 5 H 0.081 0.919 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.871 3.129 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.266 1.266 12 N -0.532 5.532 13 C 0.037 3.963 14 C 0.054 3.946 15 C -0.032 4.032 16 C 0.001 3.999 17 C -0.051 4.051 18 N -0.301 5.301 19 C 0.132 3.868 20 C 0.466 3.534 21 O -0.480 6.480 22 O -0.512 6.512 23 N -0.066 5.066 24 N -0.255 5.255 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.020 0.980 28 H 0.263 0.737 29 H 0.010 0.990 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.194 0.806 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.798 -1.174 26.335 27.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.072 3.928 3 H 0.018 0.982 4 C -0.537 4.537 5 H 0.099 0.901 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.699 3.301 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.191 1.191 12 N -0.257 5.257 13 C -0.111 4.111 14 C -0.075 4.075 15 C -0.071 4.071 16 C -0.136 4.136 17 C -0.199 4.199 18 N -0.096 5.096 19 C 0.008 3.992 20 C 0.304 3.696 21 O -0.365 6.365 22 O -0.325 6.325 23 N -0.045 5.045 24 N -0.123 5.123 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.211 0.789 37 H 0.159 0.841 38 H 0.167 0.833 39 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -8.419 -0.205 26.150 27.473 hybrid contribution 0.265 0.932 0.358 1.033 sum -8.154 0.727 26.509 27.744 Atomic orbital electron populations 1.21977 0.98052 1.00271 0.98770 1.19722 0.92117 0.92202 0.88755 0.98213 1.20891 1.42905 0.95886 0.94050 0.90079 1.24987 0.94715 0.97880 0.95477 1.69887 1.46257 1.35619 1.01948 0.86958 0.79154 0.86989 0.77046 1.20309 1.21499 1.19111 1.62156 1.10043 1.52151 1.01357 1.22215 0.88042 0.99284 1.01578 1.22049 1.00688 0.94962 0.89797 1.20016 1.01680 0.98024 0.87421 1.22225 0.99202 0.92734 0.99463 1.23396 1.06450 0.97862 0.92161 1.46742 1.33590 1.12137 1.17124 1.21168 0.91512 1.08379 0.78118 1.22977 0.87178 0.74604 0.84838 1.90892 1.17281 1.41957 1.86340 1.84433 1.47926 1.83375 1.16751 1.78415 1.05721 1.10521 1.09869 1.75141 1.18303 1.15070 1.03808 0.92786 0.93301 0.96082 0.92669 0.97132 0.93528 0.89862 0.95169 0.91118 0.89331 0.89990 0.78858 0.84051 0.83336 0.71936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.76 37.15 0.33 -2.56 16 2 C 0.18 4.30 1.70 -68.87 -0.12 4.18 16 3 H 0.00 0.01 5.35 -51.93 -0.28 -0.27 16 4 C -0.50 -13.88 7.46 -34.44 -0.26 -14.14 16 5 H 0.08 2.47 8.04 -52.49 -0.42 2.05 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 8 Si 0.87 21.97 26.95 -169.99 -4.58 17.39 16 9 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.27 -6.52 6.88 56.52 0.39 -6.13 16 12 N -0.53 -11.19 4.62 -236.28 -1.09 -12.28 16 13 C 0.04 0.75 9.06 60.07 0.54 1.30 16 14 C 0.05 0.97 4.75 -3.82 -0.02 0.95 16 15 C -0.03 -0.46 5.72 -27.88 -0.16 -0.62 16 16 C 0.00 0.01 6.50 -82.78 -0.54 -0.53 16 17 C -0.05 -0.51 11.49 -17.05 -0.20 -0.71 16 18 N -0.30 -3.14 3.20 -62.44 -0.20 -3.34 16 19 C 0.13 0.64 7.05 -5.20 -0.04 0.60 16 20 C 0.47 3.24 8.34 36.00 0.30 3.54 16 21 O -0.48 -5.86 16.44 -18.75 -0.31 -6.17 16 22 O -0.51 -1.89 13.42 -39.26 -0.53 -2.42 16 23 N -0.07 -1.00 12.13 60.35 0.73 -0.26 16 24 N -0.25 -4.31 12.40 33.29 0.41 -3.89 16 25 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.05 1.09 8.13 -51.93 -0.42 0.67 16 27 H 0.02 0.40 6.57 -51.93 -0.34 0.06 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.79 6.30 -51.93 -0.33 0.46 16 31 H 0.08 1.86 6.96 -51.93 -0.36 1.50 16 32 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.07 1.26 5.97 -51.93 -0.31 0.95 16 34 H 0.09 1.11 8.12 -51.93 -0.42 0.69 16 35 H 0.08 1.20 6.47 -51.93 -0.34 0.86 16 36 H 0.19 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.15 0.08 8.07 -51.93 -0.42 -0.34 16 39 H 0.42 0.11 9.10 45.56 0.41 0.53 16 LS Contribution 328.53 15.07 4.95 4.95 Total: -1.00 -37.95 328.53 -4.57 -42.53 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -4.48 Total: -3.90 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.25 Total: -6.04 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.63 Total: -46.33 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.84 Total: -8.59 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.58 Total: 17.39 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -37.95 -4.57 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516417.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.832 kcal (2) G-P(sol) polarization free energy of solvation -37.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds