Wall clock time and date at job start Tue Mar 31 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47184 * 2 1 4 4 C 1.50700 * 109.47202 * 239.99798 * 2 1 3 5 5 H 1.08002 * 120.00100 * 274.89981 * 4 2 1 6 6 C 1.37880 * 119.99941 * 94.90451 * 4 2 1 7 7 N 1.31515 * 120.00086 * 183.89537 * 6 4 2 8 8 Si 1.86799 * 120.00148 * 3.88538 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.42591 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.42885 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.43060 * 8 6 4 12 12 N 1.46900 * 109.47308 * 119.99936 * 2 1 3 13 13 C 1.46905 * 111.00101 * 176.04915 * 12 2 1 14 14 C 1.46902 * 110.99962 * 299.99666 * 12 2 1 15 15 C 1.53002 * 109.47438 * 169.99775 * 14 12 2 16 16 C 1.50696 * 109.47456 * 180.02562 * 15 14 12 17 17 C 1.35344 * 126.75565 * 124.71418 * 16 15 14 18 18 N 1.35310 * 106.17870 * 179.85078 * 17 16 15 19 19 C 1.46504 * 125.87172 * 180.11614 * 18 17 16 20 20 C 1.50692 * 109.47039 * 125.32572 * 19 18 17 21 21 O 1.20825 * 120.00323 * 0.02562 * 20 19 18 22 22 O 1.34232 * 120.00015 * 180.02562 * 20 19 18 23 23 N 1.28719 * 108.26228 * 0.42057 * 18 17 16 24 24 N 1.28633 * 110.17791 * 359.72851 * 23 18 17 25 25 H 1.09000 * 109.47001 * 186.77157 * 1 2 3 26 26 H 1.08991 * 109.47541 * 66.76836 * 1 2 3 27 27 H 1.09003 * 109.47235 * 306.75987 * 1 2 3 28 28 H 0.96996 * 120.00229 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47366 * 59.99548 * 13 12 2 30 30 H 1.09000 * 109.46890 * 180.02562 * 13 12 2 31 31 H 1.08997 * 109.46501 * 299.99899 * 13 12 2 32 32 H 1.08998 * 109.47296 * 290.00509 * 14 12 2 33 33 H 1.09005 * 109.46858 * 50.00531 * 14 12 2 34 34 H 1.08999 * 109.46954 * 300.00604 * 15 14 12 35 35 H 1.09004 * 109.46745 * 60.00053 * 15 14 12 36 36 H 1.08006 * 126.90914 * 359.97438 * 17 16 15 37 37 H 1.08995 * 109.47265 * 245.32936 * 19 18 17 38 38 H 1.09004 * 109.46930 * 5.32880 * 19 18 17 39 39 H 0.96696 * 116.99903 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1370 -1.7854 -1.2284 6 6 2.3584 0.0119 -2.3587 7 7 2.7234 -0.6130 -3.4568 8 14 2.2813 1.8780 -2.3277 9 1 3.5499 2.4166 -1.7748 10 1 2.0869 2.3884 -3.7085 11 1 1.1458 2.3124 -1.4749 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7944 1.1870 14 6 1.5487 -0.0263 2.4211 15 6 1.8627 -0.9042 3.6342 16 6 1.3790 -0.2211 4.8874 17 6 0.5327 -0.7307 5.8124 18 7 0.3859 0.2268 6.7572 19 6 -0.4410 0.1242 7.9622 20 6 0.4034 0.4119 9.1768 21 8 1.5755 0.6760 9.0490 22 8 -0.1466 0.3747 10.4007 23 7 1.0926 1.2457 6.4120 24 7 1.6973 1.0106 5.3013 25 1 -0.3633 -1.0205 0.1212 26 1 -0.3634 0.4053 -0.9442 27 1 -0.3634 0.6150 0.8233 28 1 2.9524 -0.1049 -4.2507 29 1 3.9187 0.2052 1.1591 30 1 3.8209 -1.3116 2.0859 31 1 3.8029 -1.3530 0.3067 32 1 2.0519 0.9347 2.5279 33 1 0.4722 0.1324 2.3564 34 1 1.3595 -1.8651 3.5272 35 1 2.9392 -1.0630 3.6989 36 1 0.0694 -1.7062 5.8001 37 1 -1.2555 0.8463 7.9066 38 1 -0.8524 -0.8826 8.0359 39 1 0.4349 0.5658 11.1492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833516417.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:04 Heat of formation + Delta-G solvation = -7.967174 kcal Electronic energy + Delta-G solvation = -21735.871819 eV Core-core repulsion = 18294.318783 eV Total energy + Delta-G solvation = -3441.553036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.29121 -41.28787 -39.03121 -37.32441 -36.00213 -34.92052 -33.67066 -31.85262 -30.44731 -29.58530 -27.47176 -26.08711 -24.45547 -23.72471 -22.60323 -21.50098 -20.82645 -19.35797 -19.06397 -18.44909 -17.80478 -17.16767 -16.86758 -16.61025 -16.16932 -15.98223 -15.71342 -14.98586 -14.73021 -14.49393 -14.28982 -14.22622 -13.88326 -13.66592 -13.07938 -12.88868 -12.77269 -12.67219 -12.61362 -12.52218 -12.22349 -12.06535 -11.94651 -11.81395 -11.73256 -11.61465 -11.06565 -10.97620 -10.73916 -10.06113 -8.96849 -8.27416 -6.28377 0.53192 1.00304 1.17268 1.29937 1.32892 1.42175 1.53692 2.02433 2.32642 3.01873 3.25464 3.47952 3.71962 4.04148 4.04475 4.06921 4.19782 4.24638 4.44978 4.51535 4.61302 4.70370 4.74081 4.85276 4.87056 4.99614 5.01680 5.14134 5.24433 5.30687 5.38297 5.46084 5.52503 5.60574 5.71115 6.12753 6.41246 6.71692 6.80741 6.81022 7.37296 7.51088 8.89217 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.042977 B = 0.002969 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.353169 B = 9429.749028 C = 9506.898172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.177 3.823 3 H -0.012 1.012 4 C -0.492 4.492 5 H 0.043 0.957 6 C 0.018 3.982 7 N -0.944 5.944 8 Si 0.928 3.072 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.252 1.252 12 N -0.534 5.534 13 C 0.042 3.958 14 C 0.060 3.940 15 C -0.019 4.019 16 C -0.034 4.034 17 C -0.016 4.016 18 N -0.292 5.292 19 C 0.121 3.879 20 C 0.473 3.527 21 O -0.544 6.544 22 O -0.498 6.498 23 N -0.106 5.106 24 N -0.306 5.306 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.265 0.735 29 H -0.001 1.001 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.008 0.992 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.248 0.752 37 H 0.171 0.829 38 H 0.203 0.797 39 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 -1.668 29.025 31.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.069 3.931 3 H 0.005 0.995 4 C -0.531 4.531 5 H 0.061 0.939 6 C -0.180 4.180 7 N -0.585 5.585 8 Si 0.753 3.247 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.176 1.176 12 N -0.259 5.259 13 C -0.107 4.107 14 C -0.068 4.068 15 C -0.058 4.058 16 C -0.172 4.172 17 C -0.166 4.166 18 N -0.087 5.087 19 C 0.001 3.999 20 C 0.314 3.686 21 O -0.433 6.433 22 O -0.312 6.312 23 N -0.085 5.085 24 N -0.174 5.174 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.018 0.982 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.264 0.736 37 H 0.188 0.812 38 H 0.220 0.780 39 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -10.919 -0.678 28.916 30.916 hybrid contribution 0.958 0.964 -0.291 1.389 sum -9.961 0.285 28.625 30.310 Atomic orbital electron populations 1.21849 0.95931 1.01216 0.99404 1.19654 0.93726 0.91101 0.88588 0.99470 1.21034 1.42030 0.94320 0.95710 0.93857 1.25703 0.94807 1.02298 0.95161 1.70015 1.48243 1.37412 1.02796 0.86030 0.79520 0.81694 0.77429 1.20287 1.20906 1.17553 1.62092 1.10188 1.51972 1.01609 1.22171 0.87928 0.98613 1.01967 1.22057 1.00467 0.94627 0.89664 1.19834 1.01650 0.98208 0.86098 1.22287 1.01545 0.92788 1.00618 1.24092 1.03665 0.98799 0.90060 1.47130 1.32346 1.10971 1.18228 1.21885 0.90517 1.12452 0.75062 1.23392 0.86398 0.72775 0.86021 1.90891 1.20030 1.45157 1.87207 1.84410 1.47819 1.82497 1.16458 1.78313 1.07566 1.12645 1.09933 1.75060 1.20075 1.17105 1.05139 0.92197 0.94247 0.93346 0.92575 0.98207 0.89998 0.92747 0.97325 0.90589 0.86835 0.90757 0.73576 0.81203 0.77965 0.70206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 8.76 71.98 0.63 -4.64 16 2 C 0.18 8.45 1.70 44.17 0.08 8.53 16 3 H -0.01 -0.61 5.35 -2.39 -0.01 -0.63 16 4 C -0.49 -28.00 7.46 25.60 0.19 -27.81 16 5 H 0.04 2.74 8.04 -2.91 -0.02 2.72 16 6 C 0.02 1.05 5.47 84.66 0.46 1.51 16 7 N -0.94 -58.98 13.96 21.45 0.30 -58.69 16 8 Si 0.93 45.70 26.95 68.60 1.85 47.55 16 9 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.25 -11.69 6.88 99.48 0.68 -11.01 16 12 N -0.53 -22.09 4.62 -901.46 -4.17 -26.26 16 13 C 0.04 1.69 9.06 127.69 1.16 2.85 16 14 C 0.06 2.08 4.75 86.30 0.41 2.49 16 15 C -0.02 -0.49 5.72 29.85 0.17 -0.32 16 16 C -0.03 -0.89 6.50 41.59 0.27 -0.62 16 17 C -0.02 -0.26 11.49 83.49 0.96 0.69 16 18 N -0.29 -5.17 3.20 -351.48 -1.12 -6.29 16 19 C 0.12 0.64 7.05 85.63 0.60 1.24 16 20 C 0.47 5.37 8.34 71.23 0.59 5.96 16 21 O -0.54 -12.93 16.44 21.97 0.36 -12.56 16 22 O -0.50 -2.18 13.42 -51.43 -0.69 -2.87 16 23 N -0.11 -3.10 12.13 37.02 0.45 -2.65 16 24 N -0.31 -10.24 12.40 -48.60 -0.60 -10.84 16 25 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.04 1.69 8.13 -2.39 -0.02 1.67 16 27 H 0.05 1.75 6.57 -2.39 -0.02 1.73 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.08 2.72 6.30 -2.39 -0.02 2.71 16 31 H 0.05 2.51 6.96 -2.39 -0.02 2.49 16 32 H 0.01 0.33 8.12 -2.39 -0.02 0.31 16 33 H 0.08 2.53 5.97 -2.38 -0.01 2.51 16 34 H 0.11 2.42 8.12 -2.39 -0.02 2.40 16 35 H 0.07 2.05 6.47 -2.39 -0.02 2.04 16 36 H 0.25 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.17 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.20 -1.15 8.07 -2.38 -0.02 -1.17 16 39 H 0.43 -0.75 9.10 -74.06 -0.67 -1.42 16 Total: -1.00 -88.26 328.53 2.28 -85.98 By element: Atomic # 1 Polarization: -3.63 SS G_CDS: 0.38 Total: -3.25 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 5.52 Total: -10.11 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -5.15 Total: -104.73 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.33 Total: -15.44 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.85 Total: 47.55 kcal Total: -88.26 2.28 -85.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516417.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.014 kcal (2) G-P(sol) polarization free energy of solvation -88.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds