Wall clock time and date at job start Tue Mar 31 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47192 * 2 1 4 4 C 1.50694 * 109.47302 * 119.99958 * 2 1 3 5 5 H 1.08001 * 120.00240 * 120.00230 * 4 2 1 6 6 C 1.37875 * 119.99987 * 300.00396 * 4 2 1 7 7 N 1.31516 * 120.00147 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00045 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47137 * 59.99435 * 8 6 4 10 10 H 1.48493 * 109.47315 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46832 * 299.99724 * 8 6 4 12 12 N 1.46899 * 109.47018 * 240.00378 * 2 1 3 13 13 C 1.46900 * 110.99900 * 306.04059 * 12 2 1 14 14 C 1.46900 * 111.00376 * 69.99931 * 12 2 1 15 15 C 1.52996 * 109.47098 * 170.00021 * 14 12 2 16 16 C 1.50706 * 109.46816 * 179.97438 * 15 14 12 17 17 C 1.35353 * 126.75076 * 124.99944 * 16 15 14 18 18 N 1.35309 * 106.17498 * 179.97438 * 17 16 15 19 19 C 1.46499 * 125.87027 * 179.97438 * 18 17 16 20 20 C 1.50705 * 109.47187 * 124.97249 * 19 18 17 21 21 O 1.20824 * 119.99977 * 0.02562 * 20 19 18 22 22 O 1.34229 * 119.99842 * 180.02562 * 20 19 18 23 23 N 1.28714 * 108.26535 * 359.97438 * 18 17 16 24 24 N 1.28637 * 110.18046 * 0.02562 * 23 18 17 25 25 H 1.09001 * 109.47424 * 300.00056 * 1 2 3 26 26 H 1.09003 * 109.47151 * 59.99475 * 1 2 3 27 27 H 1.09005 * 109.47192 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99633 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46903 * 183.95439 * 13 12 2 30 30 H 1.08995 * 109.47079 * 303.95627 * 13 12 2 31 31 H 1.09005 * 109.46778 * 63.96106 * 13 12 2 32 32 H 1.09009 * 109.47109 * 49.99800 * 14 12 2 33 33 H 1.09003 * 109.46823 * 290.00180 * 14 12 2 34 34 H 1.08997 * 109.47274 * 60.00346 * 15 14 12 35 35 H 1.09004 * 109.46966 * 299.99509 * 15 14 12 36 36 H 1.08002 * 126.91189 * 359.97438 * 17 16 15 37 37 H 1.08997 * 109.47592 * 244.97299 * 19 18 17 38 38 H 1.09007 * 109.46901 * 4.97623 * 19 18 17 39 39 H 0.96708 * 116.99564 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0076 10 1 1.8279 -0.4193 5.2204 11 1 1.8281 -2.5198 4.0081 12 7 2.0196 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3078 14 6 1.7529 0.0973 -2.4091 15 6 2.4884 -0.5255 -3.5973 16 6 2.2142 0.2843 -4.8383 17 6 3.1332 0.8389 -5.6629 18 7 2.4351 1.4668 -6.6372 19 6 3.0092 2.2123 -7.7601 20 6 2.4722 1.6612 -9.0559 21 8 1.6899 0.7405 -9.0428 22 8 2.8631 2.1931 -10.2247 23 7 1.1801 1.2966 -6.4080 24 7 1.0147 0.5957 -5.3421 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7094 1.1617 3.4844 29 1 1.8664 -2.5520 -2.1649 30 1 1.6467 -2.5987 -0.3992 31 1 0.3555 -1.9520 -1.4400 32 1 2.1024 1.1191 -2.2604 33 1 0.6813 0.1054 -2.6087 34 1 2.1388 -1.5472 -3.7460 35 1 3.5600 -0.5335 -3.3976 36 1 4.2075 0.7901 -5.5632 37 1 2.7393 3.2648 -7.6735 38 1 4.0946 2.1131 -7.7452 39 1 2.4912 1.8063 -11.0293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833516418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:09 Heat of formation + Delta-G solvation = 23.873212 kcal Electronic energy + Delta-G solvation = -21666.417945 eV Core-core repulsion = 18226.245612 eV Total energy + Delta-G solvation = -3440.172333 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.36995 -40.72477 -37.37544 -36.80498 -35.08743 -33.36738 -32.08909 -29.87826 -29.11418 -27.68250 -25.38402 -25.11993 -23.66499 -22.44457 -21.75575 -20.47199 -18.98229 -18.82469 -17.74937 -17.13356 -16.63314 -16.07205 -15.75828 -15.21767 -14.96688 -14.47728 -14.17304 -13.76127 -13.67034 -13.42681 -13.07537 -12.44405 -12.17756 -12.14201 -11.81264 -11.48586 -11.34383 -11.28988 -10.99754 -10.84032 -10.74270 -10.58189 -10.50105 -10.26543 -10.07345 -9.94615 -9.75474 -9.07331 -8.78184 -8.31296 -7.05265 -5.93717 -3.97257 1.31679 1.50975 1.78462 2.48915 2.61560 3.37061 3.41114 3.43984 3.90985 4.30801 4.31274 4.46576 4.50933 4.78255 5.02528 5.35505 5.38388 5.42154 5.64960 5.83903 5.92934 5.99502 6.20424 6.32109 6.34838 6.44039 6.57531 6.67661 6.78133 6.95740 7.00983 7.20793 7.24180 7.57228 7.80945 7.91861 8.22555 8.47047 8.49440 8.68591 9.08717 9.67310 11.13357 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.050036 B = 0.002733 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.457649 B =10242.870962 C =10258.088920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.037 0.963 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.537 5.537 13 C 0.032 3.968 14 C 0.062 3.938 15 C -0.032 4.032 16 C 0.002 3.998 17 C -0.051 4.051 18 N -0.301 5.301 19 C 0.132 3.868 20 C 0.466 3.534 21 O -0.480 6.480 22 O -0.512 6.512 23 N -0.066 5.066 24 N -0.254 5.254 25 H 0.086 0.914 26 H 0.008 0.992 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.194 0.806 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 3.490 -23.161 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.260 5.260 13 C -0.117 4.117 14 C -0.067 4.067 15 C -0.072 4.072 16 C -0.135 4.135 17 C -0.200 4.200 18 N -0.096 5.096 19 C 0.008 3.992 20 C 0.304 3.696 21 O -0.365 6.365 22 O -0.325 6.325 23 N -0.046 5.046 24 N -0.122 5.122 25 H 0.105 0.895 26 H 0.027 0.973 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.211 0.789 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 6.585 3.765 -23.106 24.319 hybrid contribution 0.282 -0.643 0.392 0.804 sum 6.867 3.123 -22.713 23.933 Atomic orbital electron populations 1.22396 1.00812 0.99429 1.00496 1.19285 0.89810 0.94366 0.85994 0.94528 1.21085 1.30390 1.12405 0.89669 0.92009 1.24938 0.95328 0.95181 0.98970 1.69890 1.37153 1.23100 1.23383 0.86588 0.79152 0.79607 0.82179 1.20292 1.21493 1.20402 1.62341 1.58836 1.02528 1.02302 1.22267 0.96402 0.91998 1.01004 1.21909 0.97733 0.97260 0.89806 1.20025 1.02018 0.97279 0.87859 1.22231 0.88715 1.02639 0.99929 1.23392 1.00708 1.03227 0.92627 1.46735 1.06364 1.37351 1.19162 1.21168 1.00887 0.97676 0.79438 1.22995 0.79479 0.81183 0.85938 1.90890 1.31170 1.27063 1.87370 1.84437 1.68839 1.62273 1.16944 1.78412 0.97233 1.16083 1.12822 1.75142 1.23402 1.10737 1.02949 0.89495 0.97325 0.95008 0.93036 0.93819 0.90985 0.96386 0.91814 0.94724 0.90175 0.89457 0.78898 0.84034 0.83365 0.71973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 8.22 37.16 0.31 -4.04 16 2 C 0.21 5.44 2.31 -68.87 -0.16 5.28 16 3 H 0.04 1.03 7.93 -51.93 -0.41 0.62 16 4 C -0.50 -13.72 7.91 -34.44 -0.27 -14.00 16 5 H 0.06 1.70 7.12 -52.49 -0.37 1.32 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.54 -11.67 4.70 -236.29 -1.11 -12.78 16 13 C 0.03 0.64 8.45 60.06 0.51 1.15 16 14 C 0.06 1.18 4.51 -3.83 -0.02 1.16 16 15 C -0.03 -0.49 5.72 -27.88 -0.16 -0.64 16 16 C 0.00 0.03 6.50 -82.77 -0.54 -0.51 16 17 C -0.05 -0.55 11.49 -17.05 -0.20 -0.75 16 18 N -0.30 -3.30 3.20 -62.44 -0.20 -3.50 16 19 C 0.13 0.70 7.05 -5.19 -0.04 0.66 16 20 C 0.47 3.39 8.34 36.01 0.30 3.69 16 21 O -0.48 -6.01 16.44 -18.75 -0.31 -6.32 16 22 O -0.51 -2.04 13.42 -39.26 -0.53 -2.57 16 23 N -0.07 -1.04 12.13 60.35 0.73 -0.30 16 24 N -0.25 -4.44 12.40 33.29 0.41 -4.02 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.01 0.19 6.91 -51.93 -0.36 -0.17 16 27 H 0.03 0.77 6.41 -51.93 -0.33 0.44 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.04 0.74 6.47 -51.93 -0.34 0.41 16 30 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 31 H 0.02 0.36 6.46 -51.93 -0.34 0.03 16 32 H 0.06 1.24 7.93 -51.92 -0.41 0.83 16 33 H 0.03 0.71 7.06 -51.93 -0.37 0.35 16 34 H 0.08 1.21 6.55 -51.93 -0.34 0.87 16 35 H 0.09 1.16 8.12 -51.93 -0.42 0.74 16 36 H 0.19 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.15 0.14 8.07 -51.93 -0.42 -0.28 16 39 H 0.42 0.22 9.10 45.56 0.41 0.64 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -36.95 325.76 -5.19 -42.14 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.34 Total: -2.24 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.36 Total: -6.53 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.46 Total: -45.89 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.84 Total: -8.89 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.95 -5.19 -42.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.012 kcal (2) G-P(sol) polarization free energy of solvation -36.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds