Wall clock time and date at job start Tue Mar 31 2020 05:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47192 * 2 1 4 4 C 1.50694 * 109.47302 * 119.99958 * 2 1 3 5 5 H 1.08001 * 120.00240 * 120.00230 * 4 2 1 6 6 C 1.37875 * 119.99987 * 300.00396 * 4 2 1 7 7 N 1.31516 * 120.00147 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00045 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47137 * 59.99435 * 8 6 4 10 10 H 1.48493 * 109.47315 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46832 * 299.99724 * 8 6 4 12 12 N 1.46899 * 109.47018 * 240.00378 * 2 1 3 13 13 C 1.46900 * 110.99900 * 306.04059 * 12 2 1 14 14 C 1.46900 * 111.00376 * 69.99931 * 12 2 1 15 15 C 1.52996 * 109.47098 * 170.00021 * 14 12 2 16 16 C 1.50706 * 109.46816 * 179.97438 * 15 14 12 17 17 C 1.35353 * 126.75076 * 124.99944 * 16 15 14 18 18 N 1.35309 * 106.17498 * 179.97438 * 17 16 15 19 19 C 1.46499 * 125.87027 * 179.97438 * 18 17 16 20 20 C 1.50705 * 109.47187 * 124.97249 * 19 18 17 21 21 O 1.20824 * 119.99977 * 0.02562 * 20 19 18 22 22 O 1.34229 * 119.99842 * 180.02562 * 20 19 18 23 23 N 1.28714 * 108.26535 * 359.97438 * 18 17 16 24 24 N 1.28637 * 110.18046 * 0.02562 * 23 18 17 25 25 H 1.09001 * 109.47424 * 300.00056 * 1 2 3 26 26 H 1.09003 * 109.47151 * 59.99475 * 1 2 3 27 27 H 1.09005 * 109.47192 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99633 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46903 * 183.95439 * 13 12 2 30 30 H 1.08995 * 109.47079 * 303.95627 * 13 12 2 31 31 H 1.09005 * 109.46778 * 63.96106 * 13 12 2 32 32 H 1.09009 * 109.47109 * 49.99800 * 14 12 2 33 33 H 1.09003 * 109.46823 * 290.00180 * 14 12 2 34 34 H 1.08997 * 109.47274 * 60.00346 * 15 14 12 35 35 H 1.09004 * 109.46966 * 299.99509 * 15 14 12 36 36 H 1.08002 * 126.91189 * 359.97438 * 17 16 15 37 37 H 1.08997 * 109.47592 * 244.97299 * 19 18 17 38 38 H 1.09007 * 109.46901 * 4.97623 * 19 18 17 39 39 H 0.96708 * 116.99564 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0076 10 1 1.8279 -0.4193 5.2204 11 1 1.8281 -2.5198 4.0081 12 7 2.0196 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3078 14 6 1.7529 0.0973 -2.4091 15 6 2.4884 -0.5255 -3.5973 16 6 2.2142 0.2843 -4.8383 17 6 3.1332 0.8389 -5.6629 18 7 2.4351 1.4668 -6.6372 19 6 3.0092 2.2123 -7.7601 20 6 2.4722 1.6612 -9.0559 21 8 1.6899 0.7405 -9.0428 22 8 2.8631 2.1931 -10.2247 23 7 1.1801 1.2966 -6.4080 24 7 1.0147 0.5957 -5.3421 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7094 1.1617 3.4844 29 1 1.8664 -2.5520 -2.1649 30 1 1.6467 -2.5987 -0.3992 31 1 0.3555 -1.9520 -1.4400 32 1 2.1024 1.1191 -2.2604 33 1 0.6813 0.1054 -2.6087 34 1 2.1388 -1.5472 -3.7460 35 1 3.5600 -0.5335 -3.3976 36 1 4.2075 0.7901 -5.5632 37 1 2.7393 3.2648 -7.6735 38 1 4.0946 2.1131 -7.7452 39 1 2.4912 1.8063 -11.0293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833516418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:08 Heat of formation + Delta-G solvation = -5.687954 kcal Electronic energy + Delta-G solvation = -21667.699813 eV Core-core repulsion = 18226.245612 eV Total energy + Delta-G solvation = -3441.454201 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.29375 -41.28755 -39.10232 -37.32476 -36.03346 -35.00361 -33.60087 -31.12589 -30.19822 -29.19077 -27.28485 -26.91714 -24.49606 -23.82928 -22.62929 -21.57388 -20.73348 -19.35696 -18.45859 -18.18122 -17.80427 -17.17567 -16.92695 -16.59739 -16.22387 -16.00456 -15.51249 -15.25018 -14.73862 -14.27294 -14.18649 -13.94735 -13.75121 -13.39512 -13.11165 -12.72420 -12.67450 -12.63396 -12.61795 -12.43117 -12.33638 -12.13410 -12.02344 -11.95532 -11.63871 -11.50687 -11.08357 -10.89459 -10.45475 -10.06139 -8.84535 -8.06452 -6.17713 0.52744 1.00223 1.16955 1.46367 1.48440 1.53436 1.56017 2.02165 2.46790 3.22353 3.26869 3.52039 3.71864 4.04101 4.04484 4.09719 4.20403 4.24683 4.49694 4.61881 4.68470 4.72191 4.82167 4.86238 4.90460 5.10071 5.13300 5.17255 5.26444 5.37414 5.45939 5.55163 5.60271 5.72657 5.82041 6.23874 6.51351 6.76195 6.80900 6.95806 7.50628 7.51470 8.99890 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.050036 B = 0.002733 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.457649 B =10242.870962 C =10258.088920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.511 4.511 5 H 0.061 0.939 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.538 5.538 13 C 0.036 3.964 14 C 0.069 3.931 15 C -0.016 4.016 16 C -0.035 4.035 17 C -0.018 4.018 18 N -0.292 5.292 19 C 0.121 3.879 20 C 0.473 3.527 21 O -0.543 6.543 22 O -0.498 6.498 23 N -0.105 5.105 24 N -0.307 5.307 25 H 0.061 0.939 26 H 0.014 0.986 27 H 0.033 0.967 28 H 0.260 0.740 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.009 0.991 32 H 0.052 0.948 33 H 0.011 0.989 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.248 0.752 37 H 0.170 0.830 38 H 0.204 0.796 39 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.443 3.373 -24.387 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.022 0.978 4 C -0.549 4.549 5 H 0.079 0.921 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.788 3.212 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.261 5.261 13 C -0.112 4.112 14 C -0.060 4.060 15 C -0.056 4.056 16 C -0.173 4.173 17 C -0.167 4.167 18 N -0.087 5.087 19 C 0.000 4.000 20 C 0.315 3.685 21 O -0.432 6.432 22 O -0.311 6.311 23 N -0.084 5.084 24 N -0.174 5.174 25 H 0.080 0.920 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.264 0.736 37 H 0.187 0.813 38 H 0.220 0.780 39 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 9.397 3.675 -24.404 26.408 hybrid contribution -0.521 -0.507 0.605 0.946 sum 8.876 3.168 -23.799 25.597 Atomic orbital electron populations 1.22212 1.00915 0.99103 0.99477 1.19057 0.89591 0.92937 0.87621 0.97786 1.21353 1.30459 1.12472 0.90647 0.92052 1.25759 0.95451 0.95851 1.02041 1.70033 1.38097 1.24397 1.24000 0.85541 0.78834 0.78546 0.78267 1.19445 1.21303 1.19670 1.62280 1.58608 1.03198 1.02026 1.22269 0.96044 0.91085 1.01835 1.21870 0.96981 0.96873 0.90229 1.19823 1.02638 0.96811 0.86284 1.22316 0.89217 1.04768 1.01007 1.24091 1.02307 0.99800 0.90530 1.47130 1.05285 1.36220 1.20030 1.21889 1.03442 0.98024 0.76613 1.23364 0.78064 0.79930 0.87162 1.90888 1.34106 1.30016 1.88213 1.84413 1.68191 1.61588 1.16955 1.78303 0.99770 1.17414 1.12933 1.75058 1.25668 1.12366 1.04293 0.92032 0.96674 0.94843 0.93071 0.90294 0.92323 0.97289 0.92919 0.97065 0.90375 0.86985 0.73571 0.81277 0.77953 0.70190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.23 8.22 71.98 0.59 -7.64 16 2 C 0.22 11.33 2.31 44.17 0.10 11.43 16 3 H 0.00 0.25 7.93 -2.38 -0.02 0.23 16 4 C -0.51 -28.47 7.91 25.60 0.20 -28.26 16 5 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 6 C 0.01 0.39 5.30 84.65 0.45 0.84 16 7 N -0.93 -54.53 11.32 21.45 0.24 -54.29 16 8 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.54 -23.43 4.70 -901.47 -4.24 -27.67 16 13 C 0.04 1.42 8.45 127.69 1.08 2.50 16 14 C 0.07 2.65 4.51 86.30 0.39 3.04 16 15 C -0.02 -0.47 5.72 29.85 0.17 -0.30 16 16 C -0.03 -0.98 6.50 41.60 0.27 -0.71 16 17 C -0.02 -0.32 11.49 83.49 0.96 0.64 16 18 N -0.29 -5.67 3.20 -351.46 -1.12 -6.79 16 19 C 0.12 0.80 7.05 85.63 0.60 1.41 16 20 C 0.47 5.85 8.34 71.24 0.59 6.44 16 21 O -0.54 -13.39 16.44 21.97 0.36 -13.03 16 22 O -0.50 -2.59 13.42 -51.41 -0.69 -3.28 16 23 N -0.11 -3.28 12.13 37.02 0.45 -2.83 16 24 N -0.31 -10.88 12.40 -48.59 -0.60 -11.48 16 25 H 0.06 3.52 6.07 -2.39 -0.01 3.51 16 26 H 0.01 0.72 6.91 -2.39 -0.02 0.70 16 27 H 0.03 1.67 6.41 -2.38 -0.02 1.66 16 28 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.08 2.55 6.47 -2.39 -0.02 2.54 16 30 H 0.06 2.46 6.76 -2.39 -0.02 2.44 16 31 H 0.01 0.36 6.46 -2.38 -0.02 0.34 16 32 H 0.05 2.09 7.93 -2.38 -0.02 2.07 16 33 H 0.01 0.48 7.06 -2.39 -0.02 0.46 16 34 H 0.08 2.24 6.55 -2.39 -0.02 2.22 16 35 H 0.11 2.62 8.12 -2.39 -0.02 2.60 16 36 H 0.25 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.17 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.20 -0.88 8.07 -2.38 -0.02 -0.90 16 39 H 0.44 -0.46 9.10 -74.05 -0.67 -1.13 16 Total: -1.00 -85.34 325.76 2.25 -83.10 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 0.41 Total: 0.75 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 5.41 Total: -10.61 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.27 Total: -103.06 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.33 Total: -16.30 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -85.34 2.25 -83.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.410 kcal (2) G-P(sol) polarization free energy of solvation -85.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds