Wall clock time and date at job start Tue Mar 31 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47595 * 2 1 4 4 N 1.46502 * 109.47220 * 175.24631 * 3 2 1 5 5 C 1.35496 * 126.97456 * 275.59143 * 4 3 2 6 6 C 1.50700 * 126.35028 * 359.97438 * 5 4 3 7 7 N 1.30525 * 107.30243 * 180.22954 * 5 4 3 8 8 N 1.28590 * 109.67377 * 359.76982 * 7 5 4 9 9 C 1.30528 * 109.67414 * 0.02562 * 8 7 5 10 10 C 1.50695 * 126.34663 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47448 * 273.75216 * 10 9 8 12 12 C 1.36938 * 119.99682 * 264.45336 * 11 10 9 13 13 H 1.08003 * 119.99901 * 19.37637 * 12 11 10 14 14 C 1.38809 * 120.00094 * 199.36834 * 12 11 10 15 15 N 1.31621 * 119.99810 * 20.70378 * 14 12 11 16 16 Si 1.86805 * 120.00275 * 200.69738 * 14 12 11 17 17 H 1.48496 * 109.46685 * 60.00215 * 16 14 12 18 18 H 1.48492 * 109.47009 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46864 * 300.00359 * 16 14 12 20 20 C 1.46493 * 120.00526 * 84.45503 * 11 10 9 21 21 C 1.50701 * 109.47476 * 85.60764 * 20 11 10 22 22 O 1.20830 * 119.99643 * 0.02562 * 21 20 11 23 23 O 1.34226 * 120.00398 * 180.02562 * 21 20 11 24 24 H 1.08994 * 109.47079 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46678 * 299.99915 * 1 2 3 26 26 H 1.08997 * 109.46762 * 59.99408 * 1 2 3 27 27 H 1.09003 * 109.46678 * 240.00085 * 2 1 3 28 28 H 1.09000 * 109.47408 * 120.00238 * 2 1 3 29 29 H 1.08998 * 109.46922 * 55.24002 * 3 2 1 30 30 H 1.09004 * 109.46868 * 295.24530 * 3 2 1 31 31 H 1.08997 * 109.47171 * 270.24835 * 6 5 4 32 32 H 1.09002 * 109.46754 * 30.25444 * 6 5 4 33 33 H 1.09006 * 109.46755 * 150.24841 * 6 5 4 34 34 H 1.09006 * 109.46947 * 33.74790 * 10 9 8 35 35 H 1.08996 * 109.47174 * 153.74607 * 10 9 8 36 36 H 0.96996 * 119.99644 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.47711 * 205.61442 * 20 11 10 38 38 H 1.09008 * 109.47017 * 325.61326 * 20 11 10 39 39 H 0.96696 * 117.00076 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5007 1.4439 0.1145 5 6 4.2288 1.3691 1.2547 6 6 3.6853 1.2683 2.6566 7 7 5.4883 1.4060 0.9141 8 7 5.5885 1.4941 -0.3649 9 6 4.3975 1.5180 -0.8984 10 6 4.0790 1.6152 -2.3681 11 7 4.0494 3.0239 -2.7692 12 6 2.8587 3.6989 -2.8113 13 1 2.0046 3.3216 -2.2686 14 6 2.7495 4.8682 -3.5514 15 7 3.6096 5.1195 -4.5155 16 14 1.3817 6.0849 -3.1794 17 1 1.5081 6.5581 -1.7775 18 1 1.4836 7.2422 -4.1042 19 1 0.0658 5.4210 -3.3610 20 6 5.2935 3.7105 -3.1254 21 6 5.6036 3.4661 -4.5797 22 8 4.8612 2.7883 -5.2501 23 8 6.7045 4.0013 -5.1304 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6089 1.9803 0.8443 30 1 1.7480 1.9311 -0.9296 31 1 3.5438 2.2692 3.0643 32 1 2.7295 0.7446 2.6389 33 1 4.3896 0.7179 3.2806 34 1 4.8434 1.0903 -2.9410 35 1 3.1062 1.1623 -2.5598 36 1 3.5331 5.9364 -5.0329 37 1 5.1802 4.7807 -2.9529 38 1 6.1085 3.3277 -2.5109 39 1 6.8615 3.8163 -6.0664 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833652537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:21 Heat of formation + Delta-G solvation = 1.946384 kcal Electronic energy + Delta-G solvation = -23262.975871 eV Core-core repulsion = 19821.852720 eV Total energy + Delta-G solvation = -3441.123152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.58732 -38.66494 -36.19660 -35.79299 -34.37542 -32.55363 -32.44670 -31.13278 -28.48890 -27.27665 -26.50876 -25.60271 -22.75242 -22.12122 -20.66983 -20.38731 -19.75327 -16.95262 -16.67522 -16.56671 -15.87136 -15.39071 -15.11812 -15.09159 -14.18724 -14.06307 -13.66231 -13.58847 -13.52998 -13.34040 -12.78687 -12.61039 -12.37030 -12.16082 -11.77968 -11.60598 -11.53832 -11.12629 -11.06932 -10.96802 -10.87414 -10.72120 -10.31556 -10.16275 -9.95390 -9.76618 -9.65273 -9.23481 -8.71670 -8.45300 -7.24574 -6.06312 -3.45095 2.29131 2.90811 3.24207 3.30437 3.32627 3.40663 3.93528 4.27145 4.51075 4.63164 4.66056 4.76607 4.91470 5.08866 5.12848 5.26034 5.31744 5.35199 5.44580 5.49097 5.57790 5.65898 5.76689 5.82893 5.90190 6.08835 6.30087 6.35048 6.45465 6.57138 6.73196 6.93065 6.93939 7.38531 7.49609 7.89058 8.02221 8.84210 9.31828 9.41559 9.57832 9.97077 11.04100 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014302 B = 0.006837 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.299221 B = 4094.452535 C = 5090.717660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.101 3.899 4 N -0.461 5.461 5 C 0.149 3.851 6 C -0.060 4.060 7 N -0.303 5.303 8 N -0.306 5.306 9 C 0.187 3.813 10 C 0.224 3.776 11 N -0.553 5.553 12 C -0.272 4.272 13 H 0.076 0.924 14 C 0.012 3.988 15 N -0.892 5.892 16 Si 0.910 3.090 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.281 1.281 20 C 0.191 3.809 21 C 0.483 3.517 22 O -0.514 6.514 23 O -0.543 6.543 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.260 0.740 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.121 -7.022 9.197 12.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C -0.022 4.022 4 N -0.152 5.152 5 C -0.118 4.118 6 C -0.119 4.119 7 N -0.144 5.144 8 N -0.146 5.146 9 C -0.083 4.083 10 C 0.093 3.907 11 N -0.272 5.272 12 C -0.400 4.400 13 H 0.093 0.907 14 C -0.188 4.188 15 N -0.535 5.535 16 Si 0.739 3.261 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.207 1.207 20 C 0.062 3.938 21 C 0.323 3.677 22 O -0.399 6.399 23 O -0.354 6.354 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.931 -6.947 9.407 12.056 hybrid contribution -2.115 0.756 -0.788 2.380 sum -5.046 -6.191 8.619 11.751 Atomic orbital electron populations 1.21690 0.94262 1.02230 1.02501 1.21894 0.96860 0.95736 1.03143 1.22061 0.76039 0.98349 1.05787 1.46122 1.08509 1.54038 1.06529 1.24607 0.89337 1.06876 0.91021 1.20091 1.00871 1.03311 0.87652 1.74122 1.14836 1.18957 1.06466 1.74169 1.19952 1.20005 1.00476 1.26842 0.85330 1.00485 0.95690 1.19192 1.01212 0.87911 0.82401 1.43739 1.03850 1.05443 1.74200 1.19070 0.89826 1.05215 1.25866 0.90672 1.24901 0.98616 1.00061 0.95255 1.69801 1.38765 1.25905 1.19010 0.86252 0.81225 0.80802 0.77785 1.20876 1.21407 1.20728 1.20103 0.87464 1.00148 0.86102 1.24905 0.75680 0.74395 0.92759 1.90495 1.47204 1.38845 1.63398 1.84613 1.46813 1.73523 1.30402 0.92147 0.92465 0.91836 0.90968 0.91584 0.89287 0.87157 0.90275 0.91036 0.89362 0.90669 0.90761 0.92910 0.87731 0.91849 0.76287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.90 16 2 C -0.14 -1.43 6.26 -26.73 -0.17 -1.60 16 3 C 0.10 1.30 5.54 -4.04 -0.02 1.28 16 4 N -0.46 -7.60 2.75 -110.66 -0.30 -7.91 16 5 C 0.15 2.43 8.03 -154.98 -1.24 1.19 16 6 C -0.06 -0.65 10.15 36.01 0.37 -0.28 16 7 N -0.30 -6.06 12.21 32.80 0.40 -5.65 16 8 N -0.31 -6.56 12.21 32.79 0.40 -6.16 16 9 C 0.19 3.67 7.61 -154.99 -1.18 2.49 16 10 C 0.22 4.56 5.88 -5.20 -0.03 4.53 16 11 N -0.55 -13.10 2.00 -175.99 -0.35 -13.45 16 12 C -0.27 -6.79 9.61 -15.06 -0.14 -6.93 16 13 H 0.08 1.76 6.20 -52.48 -0.33 1.43 16 14 C 0.01 0.30 4.87 -17.43 -0.08 0.22 16 15 N -0.89 -24.55 9.01 55.49 0.50 -24.05 16 16 Si 0.91 20.52 29.60 -169.99 -5.03 15.49 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 C 0.19 4.55 5.52 -5.20 -0.03 4.52 16 21 C 0.48 11.70 6.40 36.01 0.23 11.93 16 22 O -0.51 -13.89 16.61 -18.75 -0.31 -14.20 16 23 O -0.54 -11.29 13.42 -39.25 -0.53 -11.82 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.65 7.81 -51.93 -0.41 0.24 16 29 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 30 H 0.11 1.62 5.76 -51.93 -0.30 1.32 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.60 7.61 -51.93 -0.40 0.21 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 35 H 0.07 1.41 7.41 -51.93 -0.38 1.02 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.10 2.68 6.65 -51.93 -0.35 2.33 16 38 H 0.06 1.43 8.11 -51.92 -0.42 1.01 16 39 H 0.38 6.29 9.10 45.56 0.41 6.71 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -33.40 330.91 -6.85 -40.25 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.67 Total: 6.07 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: -1.94 Total: 16.45 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.65 Total: -57.23 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.84 Total: -26.02 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.40 -6.85 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833652537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.195 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds