Wall clock time and date at job start Tue Mar 31 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00257 * 2 1 4 4 H 1.48497 * 109.47138 * 270.00179 * 3 2 1 5 5 H 1.48507 * 109.46983 * 30.00342 * 3 2 1 6 6 H 1.48507 * 109.47143 * 150.00224 * 3 2 1 7 7 C 1.37887 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99789 * 186.11320 * 7 2 1 9 9 C 1.50698 * 119.99607 * 6.38500 * 7 2 1 10 10 C 1.52994 * 115.55091 * 274.88498 * 9 7 2 11 11 O 1.45193 * 109.47629 * 294.88972 * 10 9 7 12 12 C 1.34232 * 117.00307 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00151 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99981 * 180.02562 * 12 11 10 15 15 O 1.42904 * 109.46849 * 180.02562 * 14 12 11 16 16 C 1.42900 * 113.99620 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46939 * 179.97438 * 16 15 14 18 18 C 1.54273 * 110.02927 * 292.90455 * 17 16 15 19 19 C 1.54966 * 104.15817 * 217.13733 * 18 17 16 20 20 C 1.54885 * 102.77634 * 37.88683 * 19 18 17 21 21 C 1.53875 * 110.03611 * 175.69009 * 17 16 15 22 22 C 1.53001 * 117.49598 * 129.22403 * 9 7 2 23 23 C 1.52997 * 117.50100 * 60.56368 * 9 7 2 24 24 H 0.97004 * 120.00151 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47303 * 54.89674 * 10 9 7 26 26 H 1.09010 * 109.47224 * 174.88947 * 10 9 7 27 27 H 1.09001 * 109.47119 * 300.00420 * 14 12 11 28 28 H 1.09000 * 109.46873 * 60.00569 * 14 12 11 29 29 H 1.08997 * 109.46911 * 299.99423 * 16 15 14 30 30 H 1.08997 * 109.47708 * 59.99928 * 16 15 14 31 31 H 1.09000 * 110.01961 * 54.29000 * 17 16 15 32 32 H 1.08998 * 110.48758 * 335.78362 * 18 17 16 33 33 H 1.08999 * 110.48753 * 98.42775 * 18 17 16 34 34 H 1.09001 * 110.71967 * 279.57384 * 19 18 17 35 35 H 1.08995 * 110.92337 * 156.29493 * 19 18 17 36 36 H 1.09007 * 110.48223 * 203.40323 * 20 19 18 37 37 H 1.09004 * 110.59828 * 80.82325 * 20 19 18 38 38 H 1.09001 * 110.03232 * 238.57250 * 21 17 16 39 39 H 1.09004 * 110.02885 * 359.94391 * 21 17 16 40 40 H 1.09003 * 117.50064 * 359.97438 * 22 9 7 41 41 H 1.08997 * 117.50444 * 145.01778 * 22 9 7 42 42 H 1.08997 * 117.50286 * 214.97535 * 23 9 7 43 43 H 1.09000 * 117.49777 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0799 -1.1969 0.0991 9 6 1.2579 -2.4951 -0.1463 10 6 0.6970 -3.0828 1.1502 11 8 1.7928 -3.4499 2.0291 12 6 1.4685 -3.9840 3.2171 13 8 0.3074 -4.1399 3.5127 14 6 2.5527 -4.3890 4.1824 15 8 1.9599 -4.9274 5.3659 16 6 2.9063 -5.3441 6.3521 17 6 2.1637 -5.8999 7.5689 18 6 1.3876 -4.7695 8.2760 19 6 1.5212 -5.1033 9.7833 20 6 2.9714 -5.6368 9.8888 21 6 3.1701 -6.4514 8.5941 22 6 1.7501 -3.4765 -1.2119 23 6 0.4459 -2.7041 -1.4260 24 1 -0.4850 0.8401 0.0004 25 1 0.0685 -2.3412 1.6433 26 1 0.1031 -3.9677 0.9209 27 1 3.1883 -5.1437 3.7191 28 1 3.1533 -3.5170 4.4408 29 1 3.5497 -6.1182 5.9340 30 1 3.5138 -4.4917 6.6559 31 1 1.4767 -6.6874 7.2592 32 1 1.8399 -3.8020 8.0581 33 1 0.3404 -4.7788 7.9737 34 1 0.8048 -5.8721 10.0730 35 1 1.3933 -4.2089 10.3929 36 1 3.0792 -6.2783 10.7635 37 1 3.6816 -4.8110 9.9328 38 1 2.9710 -7.5065 8.7823 39 1 4.1875 -6.3240 8.2242 40 1 2.6136 -3.1810 -1.8078 41 1 1.6739 -4.5408 -0.9896 42 1 -0.4877 -3.2606 -1.3445 43 1 0.4514 -1.9005 -2.1624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835188901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:25 Heat of formation + Delta-G solvation = -126.296672 kcal Electronic energy + Delta-G solvation = -21922.702733 eV Core-core repulsion = 18547.266138 eV Total energy + Delta-G solvation = -3375.436595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.82828 -38.89227 -37.25510 -36.53642 -35.15822 -31.97509 -30.85205 -28.94535 -28.45346 -26.38021 -25.17264 -24.35961 -21.25278 -20.90520 -20.57977 -19.78701 -19.26900 -17.39644 -16.65525 -16.50416 -16.34863 -15.73141 -15.47764 -15.08494 -14.92469 -14.59918 -14.00510 -13.56690 -13.48905 -13.23013 -12.66596 -12.28264 -11.95029 -11.77775 -11.58679 -11.49299 -11.35379 -11.21094 -11.00603 -10.94190 -10.85273 -10.80264 -10.62395 -10.55130 -10.30074 -9.93972 -9.85931 -9.74570 -9.53689 -8.84139 -8.48720 -8.22427 -6.08140 -4.13698 2.73839 2.79260 3.27986 3.35143 3.37993 4.00426 4.38006 4.39174 4.39867 4.61576 4.99512 5.02510 5.15197 5.19642 5.21916 5.23828 5.24108 5.27831 5.39322 5.43784 5.47794 5.52825 5.57393 5.66670 5.79441 5.88196 5.97806 6.06223 6.12911 6.22451 6.23648 6.32292 6.51949 6.62605 6.71386 7.00660 7.01966 7.24643 7.34818 7.45921 7.85153 8.34875 8.45640 8.88069 9.52267 11.01306 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.003137 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.080506 B = 8922.903643 C = 9523.587504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.491 4.491 8 H 0.064 0.936 9 C 0.037 3.963 10 C 0.118 3.882 11 O -0.337 6.337 12 C 0.453 3.547 13 O -0.503 6.503 14 C 0.071 3.929 15 O -0.366 6.366 16 C 0.068 3.932 17 C -0.091 4.091 18 C -0.115 4.115 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.118 4.118 22 C -0.205 4.205 23 C -0.145 4.145 24 H 0.262 0.738 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 -11.094 15.007 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.529 4.529 8 H 0.082 0.918 9 C 0.037 3.963 10 C 0.045 3.955 11 O -0.253 6.253 12 C 0.295 3.705 13 O -0.391 6.391 14 C -0.006 4.006 15 O -0.285 6.285 16 C -0.009 4.009 17 C -0.110 4.110 18 C -0.153 4.153 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.242 4.242 23 C -0.183 4.183 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.934 -11.008 15.072 19.584 hybrid contribution 0.487 0.959 -0.133 1.084 sum 6.422 -10.049 14.938 19.115 Atomic orbital electron populations 1.69997 1.05923 1.26761 1.49032 1.25027 0.94866 0.99121 0.94474 0.86574 0.79958 0.83220 0.78165 1.20567 1.21225 1.19733 1.20395 0.93099 0.88342 1.51071 0.91826 1.18779 0.98929 0.94198 0.84423 1.22931 0.85727 0.97053 0.89812 1.86477 1.41833 1.71197 1.25796 1.23002 0.89473 0.75485 0.82584 1.90637 1.21226 1.50742 1.76537 1.21663 0.92987 1.00200 0.85758 1.87969 1.32641 1.81860 1.25983 1.22743 0.91373 0.98190 0.88550 1.21763 0.97397 0.98539 0.93280 1.22393 1.00914 0.98073 0.93920 1.22544 0.96498 1.00719 0.96758 1.22359 0.97195 0.99455 0.97234 1.22131 0.98948 0.99689 0.94758 1.23011 0.98415 0.95719 1.07100 1.22549 0.92513 1.01269 1.01938 0.92858 0.90471 0.94233 0.89393 0.89128 0.93098 0.92885 0.90038 0.91380 0.91116 0.91598 0.91629 0.91790 0.91621 0.91430 0.91581 0.90038 0.91508 0.91594 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.90 12.93 55.43 0.72 -24.19 16 2 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.49 -13.38 8.77 -34.44 -0.30 -13.68 16 8 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.04 0.93 1.61 -155.67 -0.25 0.68 16 10 C 0.12 2.84 5.28 37.15 0.20 3.03 16 11 O -0.34 -7.44 10.16 -39.26 -0.40 -7.84 16 12 C 0.45 9.02 8.03 36.01 0.29 9.31 16 13 O -0.50 -11.59 16.25 -25.48 -0.41 -12.01 16 14 C 0.07 1.03 6.53 36.01 0.24 1.27 16 15 O -0.37 -5.43 9.71 -55.19 -0.54 -5.97 16 16 C 0.07 0.72 4.98 37.16 0.19 0.90 16 17 C -0.09 -0.89 3.19 -89.50 -0.29 -1.17 16 18 C -0.12 -1.18 6.22 -25.03 -0.16 -1.34 16 19 C -0.13 -1.04 6.91 -24.70 -0.17 -1.21 16 20 C -0.12 -0.90 6.83 -25.08 -0.17 -1.07 16 21 C -0.12 -0.88 6.46 -25.62 -0.17 -1.05 16 22 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 23 C -0.15 -3.37 9.43 -26.69 -0.25 -3.62 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.08 2.06 8.13 -51.93 -0.42 1.64 16 26 H 0.04 0.90 8.09 -51.92 -0.42 0.48 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.50 8.02 -51.93 -0.42 0.09 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.73 7.77 -51.93 -0.40 0.33 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.44 7.67 -51.93 -0.40 0.05 16 40 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -30.95 359.29 -8.97 -39.92 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.52 Total: -0.39 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.21 Total: -10.91 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.72 Total: -24.19 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -1.35 Total: -25.82 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.95 -8.97 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.375 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds