Wall clock time and date at job start Tue Mar 31 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47114 * 2 1 4 4 C 1.50700 * 109.46989 * 239.99826 * 2 1 3 5 5 H 1.08007 * 120.00286 * 239.99966 * 4 2 1 6 6 C 1.37880 * 120.00154 * 60.00000 * 4 2 1 7 7 N 1.31516 * 119.99624 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00094 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47075 * 90.00322 * 8 6 4 10 10 H 1.48502 * 109.46961 * 209.99771 * 8 6 4 11 11 H 1.48497 * 109.47244 * 329.99888 * 8 6 4 12 12 C 1.53000 * 109.47059 * 120.00042 * 2 1 3 13 13 O 1.45197 * 109.46977 * 299.99643 * 12 2 1 14 14 C 1.34228 * 116.99820 * 179.97438 * 13 12 2 15 15 O 1.20830 * 120.00352 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00372 * 179.97438 * 14 13 12 17 17 C 1.53007 * 109.40772 * 60.14416 * 16 14 13 18 18 C 1.52953 * 109.41678 * 180.02562 * 16 14 13 19 19 C 1.53236 * 109.41342 * 183.69827 * 18 16 14 20 20 C 1.51265 * 108.53501 * 305.39637 * 19 18 16 21 21 O 1.20765 * 120.83462 * 231.34581 * 20 19 18 22 22 C 1.51269 * 118.31229 * 51.32662 * 20 19 18 23 23 C 1.52955 * 109.41360 * 300.36099 * 16 14 13 24 24 H 1.09001 * 109.46507 * 299.99950 * 1 2 3 25 25 H 1.08995 * 109.47173 * 60.00198 * 1 2 3 26 26 H 1.09003 * 109.46768 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47225 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46815 * 299.99673 * 3 2 1 29 29 H 1.08994 * 109.47571 * 60.00308 * 3 2 1 30 30 H 0.97002 * 119.99484 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47144 * 179.97438 * 12 2 1 32 32 H 1.09003 * 109.47558 * 60.00204 * 12 2 1 33 33 H 1.09004 * 109.46787 * 179.86315 * 17 16 14 34 34 H 1.09001 * 109.47148 * 299.86060 * 17 16 14 35 35 H 1.08994 * 109.47148 * 59.86231 * 17 16 14 36 36 H 1.09002 * 109.48451 * 303.68773 * 18 16 14 37 37 H 1.08999 * 109.48225 * 63.71663 * 18 16 14 38 38 H 1.08999 * 109.62424 * 65.09982 * 19 18 16 39 39 H 1.08999 * 109.62149 * 185.66576 * 19 18 16 40 40 H 1.09008 * 109.62116 * 188.94429 * 22 20 19 41 41 H 1.08990 * 109.78337 * 68.47155 * 22 20 19 42 42 H 1.09004 * 109.47741 * 296.26821 * 23 16 14 43 43 H 1.08995 * 109.48464 * 56.29320 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1197 -4.0080 9 1 1.3447 -2.1617 -4.4124 10 1 2.4872 -0.1404 -5.1121 11 1 3.6308 -1.7567 -3.7120 12 6 2.0400 -0.7213 1.2492 13 8 1.5561 -0.0367 2.4347 14 6 1.9163 -0.5471 3.6228 15 8 2.6133 -1.5329 3.6706 16 6 1.4524 0.1101 4.8972 17 6 -0.0770 0.1063 4.9436 18 6 1.9998 -0.6644 6.0972 19 6 1.4533 -0.0519 7.3911 20 6 1.7809 1.4248 7.3998 21 8 2.3263 1.9323 8.3503 22 6 1.4083 2.2495 6.1877 23 6 1.9572 1.5533 4.9380 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8901 29 1 1.6768 1.9563 0.8899 30 1 0.7095 1.1617 -3.4844 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -1.7490 1.2493 33 1 -0.4136 0.5793 5.8662 34 1 -0.4678 0.6583 4.0888 35 1 -0.4390 -0.9212 4.9090 36 1 1.6896 -1.7072 6.0291 37 1 3.0884 -0.6085 6.1000 38 1 0.3725 -0.1873 7.4322 39 1 1.9186 -0.5355 8.2500 40 1 1.8446 3.2447 6.2739 41 1 0.3237 2.3304 6.1157 42 1 3.0468 1.5565 4.9686 43 1 1.6170 2.0827 4.0480 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835303593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:40 Heat of formation + Delta-G solvation = -165.217839 kcal Electronic energy + Delta-G solvation = -23291.852872 eV Core-core repulsion = 19914.728528 eV Total energy + Delta-G solvation = -3377.124344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.06420 -40.70160 -38.67238 -37.70142 -36.59961 -33.27782 -32.32815 -31.53084 -27.84382 -27.54319 -27.47102 -27.05021 -24.28642 -23.93891 -21.40184 -20.68424 -19.41805 -18.49678 -17.77848 -17.71499 -17.30824 -16.72667 -16.46103 -16.27251 -15.81100 -15.53022 -15.05337 -14.80582 -14.73258 -14.24089 -13.90954 -13.54504 -13.41356 -13.26944 -13.11882 -13.00437 -12.81649 -12.66797 -12.60644 -12.53260 -12.44381 -12.30897 -12.13243 -11.84132 -11.70664 -11.62221 -11.39003 -11.24540 -11.03525 -10.71543 -10.40326 -10.39113 -8.04157 -6.21884 0.92030 1.22194 1.42821 1.45111 1.53238 1.80382 2.45557 3.12245 3.19367 3.39806 3.55707 3.68246 3.96588 4.02061 4.21661 4.25307 4.26439 4.28278 4.29636 4.54483 4.63632 4.68160 4.83109 4.87279 4.90608 4.94275 5.00053 5.01436 5.07038 5.07548 5.22056 5.25911 5.29393 5.38239 5.43539 5.61883 5.66636 5.69633 6.11050 6.20112 6.38819 6.48085 6.77180 6.85112 7.46118 8.95068 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037974 B = 0.003711 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.170495 B = 7542.810821 C = 7772.475409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.062 3.938 3 C -0.117 4.117 4 C -0.536 4.536 5 H 0.046 0.954 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.096 3.904 13 O -0.344 6.344 14 C 0.458 3.542 15 O -0.548 6.548 16 C -0.049 4.049 17 C -0.147 4.147 18 C -0.091 4.091 19 C -0.161 4.161 20 C 0.365 3.635 21 O -0.499 6.499 22 C -0.161 4.161 23 C -0.102 4.102 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.018 0.982 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.262 0.738 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.135 0.865 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.062 0.938 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 1.655 16.867 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.061 3.939 3 C -0.175 4.175 4 C -0.574 4.574 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.775 3.225 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.200 1.200 12 C 0.023 3.977 13 O -0.259 6.259 14 C 0.303 3.697 15 O -0.438 6.438 16 C -0.050 4.050 17 C -0.204 4.204 18 C -0.129 4.129 19 C -0.198 4.198 20 C 0.243 3.757 21 O -0.375 6.375 22 C -0.198 4.198 23 C -0.140 4.140 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.037 0.963 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.153 0.847 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.153 0.847 42 H 0.081 0.919 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.452 1.752 17.175 17.605 hybrid contribution 0.801 -0.860 -1.399 1.827 sum -2.651 0.892 15.776 16.022 Atomic orbital electron populations 1.21597 0.96826 0.98527 1.00459 1.18253 0.93792 0.93237 0.88587 1.21606 0.97557 0.97884 1.00460 1.21218 1.32341 1.12454 0.91365 0.93539 1.25463 0.94995 0.95534 1.01005 1.69932 1.36687 1.23114 1.23791 0.85702 0.78685 0.78484 0.79608 1.20272 1.20682 1.19986 1.23213 0.97272 0.95180 0.82042 1.86498 1.69043 1.55501 1.14882 1.24417 0.76474 0.82067 0.86739 1.90614 1.37183 1.27485 1.88543 1.20685 1.00141 0.96438 0.87719 1.22066 0.89240 1.03886 1.05180 1.21395 1.00651 1.00069 0.90748 1.22372 1.05826 0.92918 0.98654 1.25331 0.72057 0.92177 0.86128 1.90415 1.33693 1.75993 1.37447 1.22345 1.05743 0.99748 0.91964 1.21550 1.00896 0.92157 0.99402 0.94408 0.91977 0.96307 0.96453 0.91938 0.94445 0.92852 0.93746 0.93477 0.87519 0.90921 0.91631 0.89550 0.92107 0.84701 0.88391 0.88451 0.84668 0.91916 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.11 71.98 0.58 -4.76 16 2 C 0.06 2.93 0.58 -52.93 -0.03 2.90 16 3 C -0.12 -5.43 8.11 71.98 0.58 -4.85 16 4 C -0.54 -28.39 8.01 25.60 0.21 -28.18 16 5 H 0.05 2.49 7.74 -2.91 -0.02 2.46 16 6 C 0.03 1.59 5.15 84.66 0.44 2.03 16 7 N -0.90 -47.89 9.35 21.45 0.20 -47.69 16 8 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 9 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 C 0.10 4.15 4.26 71.98 0.31 4.46 16 13 O -0.34 -12.46 8.60 -51.40 -0.44 -12.90 16 14 C 0.46 14.59 6.55 71.24 0.47 15.06 16 15 O -0.55 -20.81 15.69 21.95 0.34 -20.47 16 16 C -0.05 -1.01 0.70 -52.95 -0.04 -1.04 16 17 C -0.15 -2.23 7.51 71.98 0.54 -1.69 16 18 C -0.09 -1.67 4.11 30.66 0.13 -1.55 16 19 C -0.16 -2.11 5.64 30.11 0.17 -1.94 16 20 C 0.36 6.33 6.71 29.46 0.20 6.52 16 21 O -0.50 -12.64 17.89 -1.46 -0.03 -12.66 16 22 C -0.16 -2.20 5.64 30.11 0.17 -2.03 16 23 C -0.10 -1.89 4.73 30.66 0.15 -1.74 16 24 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 25 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 29 H 0.04 1.53 7.68 -2.39 -0.02 1.51 16 30 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 31 H 0.04 1.98 8.13 -2.39 -0.02 1.96 16 32 H 0.05 2.08 8.13 -2.39 -0.02 2.06 16 33 H 0.11 0.86 4.91 -2.38 -0.01 0.85 16 34 H 0.07 1.24 8.12 -2.39 -0.02 1.23 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.62 8.00 -2.39 -0.02 1.60 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.14 0.98 6.67 -2.39 -0.02 0.97 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.14 1.10 6.68 -2.39 -0.02 1.08 16 42 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.09 1.82 8.01 -2.39 -0.02 1.80 16 Total: -1.00 -64.06 337.39 6.95 -57.11 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.99 Total: 9.27 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 3.86 Total: -16.82 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.20 Total: -47.69 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.12 Total: -46.04 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -64.06 6.95 -57.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835303593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.111 kcal (2) G-P(sol) polarization free energy of solvation -64.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds