Wall clock time and date at job start Tue Mar 31 2020 07:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50703 * 109.47084 * 300.00008 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99788 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99893 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99600 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47313 * 90.00058 * 9 7 5 11 11 H 1.48500 * 109.46706 * 210.00040 * 9 7 5 12 12 H 1.48500 * 109.46954 * 329.99547 * 9 7 5 13 13 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 14 14 O 1.45207 * 109.47307 * 59.99811 * 13 2 1 15 15 C 1.34802 * 116.99962 * 180.02562 * 14 13 2 16 16 O 1.21537 * 119.99780 * 0.02562 * 15 14 13 17 17 C 1.46943 * 119.99854 * 179.97438 * 15 14 13 18 18 C 1.33080 * 120.00131 * 180.02562 * 17 15 14 19 19 C 1.50702 * 120.00374 * 180.02562 * 18 17 15 20 20 H 1.09002 * 110.45231 * 357.39008 * 19 18 17 21 21 C 1.54505 * 110.51436 * 119.99762 * 19 18 17 22 22 C 1.54479 * 104.06187 * 118.64421 * 21 19 18 23 23 O 1.44419 * 104.80493 * 23.98291 * 22 21 19 24 24 C 1.44429 * 105.27500 * 319.48913 * 23 22 21 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 32 32 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 33 33 H 0.97005 * 119.99227 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47153 * 179.97438 * 13 2 1 35 35 H 1.09001 * 109.47289 * 299.99953 * 13 2 1 36 36 H 1.08006 * 120.00294 * 0.02562 * 17 15 14 37 37 H 1.08007 * 120.00104 * 359.97438 * 18 17 15 38 38 H 1.08992 * 110.51797 * 237.29338 * 21 19 18 39 39 H 1.09009 * 110.51054 * 0.02562 * 21 19 18 40 40 H 1.09006 * 110.37121 * 142.81161 * 22 21 19 41 41 H 1.09001 * 110.37437 * 265.03958 * 22 21 19 42 42 H 1.09005 * 110.36673 * 281.68206 * 24 23 22 43 43 H 1.08999 * 110.37198 * 159.34548 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9165 0.8669 2.3806 7 6 1.8713 -0.4818 3.7319 8 7 2.6282 -1.5505 3.8525 9 14 1.2480 0.3984 5.2572 10 1 -0.0597 -0.1776 5.6615 11 1 2.2264 0.2283 6.3613 12 1 1.0820 1.8441 4.9613 13 6 2.0401 -0.7211 -1.2493 14 8 1.5560 -0.0366 -2.4349 15 6 1.9178 -0.5491 -3.6280 16 8 2.6182 -1.5412 -3.6760 17 6 1.4644 0.0911 -4.8705 18 6 1.8211 -0.4151 -6.0485 19 6 1.3566 0.2418 -7.3228 20 1 0.7039 1.0859 -7.1002 21 6 2.5662 0.7007 -8.1674 22 6 2.4313 -0.0995 -9.4819 23 8 1.0281 -0.4291 -9.5710 24 6 0.6339 -0.7813 -8.2269 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 -1.7490 1.2492 32 1 3.1301 -0.7209 1.2493 33 1 2.8625 -1.8819 4.7335 34 1 3.1301 -0.7207 -1.2495 35 1 1.6767 -1.7488 -1.2494 36 1 0.8416 0.9725 -4.8278 37 1 2.4442 -1.2962 -6.0912 38 1 2.5104 1.7712 -8.3645 39 1 3.5003 0.4521 -7.6635 40 1 2.7318 0.5135 -10.3318 41 1 3.0339 -1.0067 -9.4374 42 1 0.9594 -1.7941 -7.9892 43 1 -0.4464 -0.6922 -8.1126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835386086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:32 Heat of formation + Delta-G solvation = -140.806342 kcal Electronic energy + Delta-G solvation = -21693.485687 eV Core-core repulsion = 18317.419905 eV Total energy + Delta-G solvation = -3376.065782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26264 -39.77545 -37.30222 -35.45376 -34.84562 -32.34619 -31.35691 -29.40651 -27.34736 -26.50996 -26.41235 -24.29835 -23.22503 -22.65331 -20.96770 -19.79399 -18.26307 -17.71073 -16.88772 -16.36644 -16.12299 -16.04127 -15.97303 -15.44375 -14.57099 -14.29163 -13.72266 -13.67145 -13.36777 -13.10946 -12.60068 -12.48459 -12.32074 -12.22972 -12.06828 -11.95384 -11.78175 -11.27389 -11.17306 -10.97492 -10.84151 -10.60607 -10.53697 -10.31733 -10.29267 -10.26702 -10.19850 -9.79322 -9.70144 -9.22433 -8.95268 -8.37466 -6.01609 -4.02718 0.93571 2.90493 2.97386 3.30951 3.37685 3.40223 3.52720 4.15648 4.24114 4.42208 4.45383 4.62275 4.71325 4.80042 4.94704 5.07589 5.22060 5.30487 5.34057 5.35007 5.48718 5.49722 5.51076 5.53089 5.81350 5.89683 6.02595 6.10079 6.18906 6.31782 6.37606 6.51107 6.62496 6.70582 6.80033 7.10460 7.11287 7.13227 7.60024 7.71888 7.93117 7.97366 8.38914 9.01589 9.60343 11.10052 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.053454 B = 0.002469 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.685037 B =11338.140072 C =11455.872289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.034 3.966 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.079 3.921 14 O -0.345 6.345 15 C 0.487 3.513 16 O -0.518 6.518 17 C -0.176 4.176 18 C -0.062 4.062 19 C -0.101 4.101 20 H 0.097 0.903 21 C -0.148 4.148 22 C 0.043 3.957 23 O -0.374 6.374 24 C 0.053 3.947 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 4.616 -23.705 24.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.003 4.003 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.006 3.994 14 O -0.261 6.261 15 C 0.333 3.667 16 O -0.409 6.409 17 C -0.195 4.195 18 C -0.080 4.080 19 C -0.119 4.119 20 H 0.116 0.884 21 C -0.185 4.185 22 C -0.034 4.034 23 O -0.293 6.293 24 C -0.024 4.024 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.962 4.218 -23.719 24.171 hybrid contribution 0.019 0.221 1.320 1.339 sum -1.943 4.439 -22.398 22.916 Atomic orbital electron populations 1.21719 0.94831 1.00936 1.00839 1.20813 0.96157 0.96206 0.92688 1.21715 1.00016 0.95745 1.00841 1.19134 0.96397 0.95306 0.89453 1.21150 1.31160 1.12150 0.90282 0.92069 1.25022 0.95288 0.95125 0.99141 1.69969 1.36909 1.23127 1.23487 0.86606 0.78551 0.80058 0.82868 1.20727 1.21327 1.19869 1.23519 0.98917 0.95939 0.81005 1.86585 1.69244 1.55548 1.14748 1.21467 0.77702 0.82194 0.85363 1.90841 1.35988 1.25606 1.88488 1.22073 1.04858 1.02824 0.89725 1.23675 0.94327 0.97561 0.92467 1.21811 0.97810 0.99121 0.93191 0.88438 1.23013 0.98456 1.01564 0.95500 1.23473 0.83277 0.98688 0.97956 1.89147 1.24434 1.88353 1.27368 1.23484 1.00445 0.97369 0.81131 0.94201 0.93765 0.91546 0.91537 0.93781 0.94213 0.96334 0.96328 0.93017 0.91611 0.91592 0.84310 0.85060 0.89878 0.89770 0.88831 0.91941 0.91521 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 2 C -0.06 -1.19 0.61 -154.51 -0.09 -1.28 16 3 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.71 7.65 -34.44 -0.26 -13.98 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.08 1.49 4.33 37.16 0.16 1.65 16 14 O -0.35 -5.77 8.89 -40.77 -0.36 -6.14 16 15 C 0.49 7.43 7.91 34.26 0.27 7.70 16 16 O -0.52 -9.28 16.01 -19.29 -0.31 -9.59 16 17 C -0.18 -1.87 9.77 -37.85 -0.37 -2.24 16 18 C -0.06 -0.54 8.09 -36.10 -0.29 -0.83 16 19 C -0.10 -0.68 3.45 -90.21 -0.31 -0.99 16 20 H 0.10 0.58 7.87 -51.93 -0.41 0.17 16 21 C -0.15 -0.88 6.73 -25.17 -0.17 -1.05 16 22 C 0.04 0.27 7.63 37.93 0.29 0.56 16 23 O -0.37 -3.30 11.65 -35.23 -0.41 -3.71 16 24 C 0.05 0.37 7.17 37.93 0.27 0.65 16 25 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 28 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.14 1.18 7.90 -52.48 -0.41 0.77 16 37 H 0.13 1.25 7.49 -52.48 -0.39 0.85 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.49 7.73 -51.92 -0.40 0.08 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.46 7.86 -51.93 -0.41 0.05 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -31.35 352.53 -7.34 -38.69 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -7.17 Total: -3.24 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -0.12 Total: -11.81 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.80 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -1.08 Total: -19.44 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.35 -7.34 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835386086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.118 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds