Wall clock time and date at job start Tue Mar 31 2020 07:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47225 * 2 1 4 4 C 1.53001 * 109.47197 * 119.99641 * 2 1 3 5 5 C 1.50697 * 109.47459 * 299.99991 * 4 2 1 6 6 H 1.08003 * 119.99947 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00081 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99840 * 359.73080 * 7 5 4 9 9 Si 1.86800 * 119.99667 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46648 * 179.72849 * 9 7 5 11 11 H 1.48501 * 109.47172 * 299.72337 * 9 7 5 12 12 H 1.48500 * 109.47333 * 59.72801 * 9 7 5 13 13 C 1.52997 * 109.47089 * 239.99860 * 2 1 3 14 14 O 1.45203 * 109.47096 * 60.00129 * 13 2 1 15 15 C 1.34794 * 117.00029 * 179.97438 * 14 13 2 16 16 O 1.21545 * 120.00023 * 359.97438 * 15 14 13 17 17 C 1.46952 * 120.00320 * 180.02562 * 15 14 13 18 18 C 1.33080 * 120.00119 * 186.62301 * 17 15 14 19 19 C 1.50693 * 120.00246 * 15.57569 * 18 17 15 20 20 H 1.08999 * 110.45974 * 14.21867 * 19 18 17 21 21 C 1.54503 * 110.51162 * 251.61077 * 19 18 17 22 22 C 1.54488 * 104.06484 * 241.35551 * 21 19 18 23 23 O 1.44428 * 104.80009 * 23.97619 * 22 21 19 24 24 C 1.44425 * 105.27254 * 319.48812 * 23 22 21 25 25 H 1.09005 * 109.46859 * 299.99989 * 1 2 3 26 26 H 1.08997 * 109.47142 * 59.99765 * 1 2 3 27 27 H 1.08999 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47257 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47252 * 300.00168 * 3 2 1 30 30 H 1.09005 * 109.47193 * 60.00216 * 3 2 1 31 31 H 1.09000 * 109.47199 * 180.02562 * 4 2 1 32 32 H 1.09003 * 109.47124 * 60.00374 * 4 2 1 33 33 H 0.97001 * 120.00214 * 0.26750 * 8 7 5 34 34 H 1.09000 * 109.47056 * 179.97438 * 13 2 1 35 35 H 1.08996 * 109.47422 * 300.00014 * 13 2 1 36 36 H 1.08002 * 119.99244 * 6.61682 * 17 15 14 37 37 H 1.07999 * 119.99609 * 195.56990 * 18 17 15 38 38 H 1.08998 * 110.51397 * 359.97438 * 21 19 18 39 39 H 1.08997 * 110.51401 * 122.71125 * 21 19 18 40 40 H 1.08994 * 110.37085 * 142.80630 * 22 21 19 41 41 H 1.09005 * 110.36872 * 265.14617 * 22 21 19 42 42 H 1.08995 * 110.37730 * 281.67864 * 24 23 22 43 43 H 1.09004 * 110.37052 * 159.34335 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9165 0.8671 2.3806 7 6 1.8704 -0.4821 3.7320 8 7 2.6217 -1.5547 3.8527 9 14 1.2472 0.3982 5.2572 10 1 1.7364 -0.3060 6.4697 11 1 1.7476 1.7963 5.2610 12 1 -0.2378 0.4039 5.2534 13 6 2.0400 -0.7213 -1.2492 14 8 1.5560 -0.0368 -2.4348 15 6 1.9186 -0.5487 -3.6278 16 8 2.6205 -1.5398 -3.6759 17 6 1.4662 0.0921 -4.8705 18 6 1.7119 -0.4847 -6.0443 19 6 2.1280 -1.9320 -6.1003 20 1 1.9392 -2.4200 -5.1441 21 6 3.6198 -2.0520 -6.4841 22 6 3.6035 -2.8429 -7.8111 23 8 2.2910 -2.6067 -8.3654 24 6 1.3869 -2.6647 -7.2406 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7489 1.2493 33 1 2.9450 -2.0120 3.0607 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7489 -1.2492 36 1 0.9342 1.0312 -4.8310 37 1 1.6131 0.0844 -6.9569 38 1 4.0563 -1.0646 -6.6339 39 1 4.1681 -2.6013 -5.7189 40 1 4.3734 -2.4682 -8.4856 41 1 3.7493 -3.9063 -7.6208 42 1 1.1927 -3.7006 -6.9629 43 1 0.4539 -2.1530 -7.4769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835386088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:37 Heat of formation + Delta-G solvation = -133.037944 kcal Electronic energy + Delta-G solvation = -22281.381815 eV Core-core repulsion = 18905.652896 eV Total energy + Delta-G solvation = -3375.728919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52774 -39.51624 -37.45221 -35.63490 -34.40120 -32.52759 -31.24348 -29.26087 -27.02686 -26.50459 -26.49389 -24.19833 -23.04457 -22.54586 -21.29349 -19.75071 -18.51402 -17.62320 -16.66641 -16.44995 -16.38599 -16.06153 -15.71739 -15.05225 -14.45085 -14.10090 -13.80670 -13.69844 -13.56871 -13.13464 -12.88629 -12.57553 -12.36150 -12.10506 -11.84237 -11.73410 -11.46615 -11.27944 -11.18675 -11.07187 -10.95949 -10.64708 -10.40582 -10.23945 -10.19875 -10.11308 -9.97512 -9.83062 -9.54145 -9.44094 -8.51567 -8.33818 -6.35399 -4.04422 0.92042 2.88683 2.94598 3.43425 3.44879 3.63441 3.70410 4.30219 4.46730 4.53417 4.57384 4.79578 4.89445 4.94593 5.15825 5.22822 5.36138 5.38958 5.40276 5.42927 5.44427 5.50612 5.70008 5.78670 5.82734 5.87656 5.92586 6.08556 6.16590 6.26854 6.43814 6.48942 6.56971 6.62217 6.75957 6.98056 7.01415 7.05781 7.29161 7.44647 7.89386 8.19792 8.45518 8.87575 9.66282 11.04484 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041829 B = 0.002876 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.224399 B = 9732.795277 C =10025.555956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.052 4.052 3 C -0.125 4.125 4 C 0.022 3.978 5 C -0.590 4.590 6 H 0.055 0.945 7 C 0.013 3.987 8 N -0.914 5.914 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.079 3.921 14 O -0.346 6.346 15 C 0.486 3.514 16 O -0.511 6.511 17 C -0.191 4.191 18 C -0.046 4.046 19 C -0.122 4.122 20 H 0.124 0.876 21 C -0.134 4.134 22 C 0.043 3.957 23 O -0.378 6.378 24 C 0.050 3.950 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.268 0.732 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 1.452 -21.787 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.052 4.052 3 C -0.182 4.182 4 C -0.015 4.015 5 C -0.628 4.628 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.551 5.551 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C 0.006 3.994 14 O -0.262 6.262 15 C 0.332 3.668 16 O -0.403 6.403 17 C -0.210 4.210 18 C -0.065 4.065 19 C -0.140 4.140 20 H 0.142 0.858 21 C -0.172 4.172 22 C -0.034 4.034 23 O -0.297 6.297 24 C -0.027 4.027 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.160 0.840 37 H 0.154 0.846 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.486 1.166 -20.303 20.390 hybrid contribution 0.153 -0.067 -1.377 1.388 sum -1.333 1.100 -21.680 21.749 Atomic orbital electron populations 1.21704 0.94632 1.00881 1.01000 1.20656 0.96271 0.96183 0.92122 1.21706 0.99900 0.95622 1.00997 1.19246 0.95655 0.95216 0.91393 1.21950 1.34852 1.14467 0.91559 0.92685 1.25814 0.95273 0.96518 1.01400 1.70779 1.32745 1.18085 1.33450 0.83569 0.75907 0.75314 0.75685 1.20862 1.21466 1.21463 1.23474 0.98804 0.95817 0.81280 1.86598 1.69100 1.55707 1.14773 1.21593 0.78150 0.81802 0.85216 1.90749 1.36226 1.25334 1.88019 1.22094 1.05862 1.03410 0.89664 1.23745 0.90447 0.95086 0.97188 1.22277 0.95796 0.93707 1.02184 0.85842 1.22833 0.95538 1.01491 0.97319 1.23495 0.85897 0.99354 0.94671 1.89103 1.17085 1.93028 1.30501 1.23551 0.93891 0.99866 0.85394 0.91427 0.94059 0.93903 0.93902 0.94061 0.91425 0.97342 0.97340 0.92157 0.91745 0.91755 0.83974 0.84567 0.90824 0.89663 0.89106 0.92171 0.91652 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.08 37.16 0.30 -2.10 16 2 C -0.05 -1.06 0.61 -154.51 -0.09 -1.15 16 3 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 4 C 0.02 0.54 3.35 -27.88 -0.09 0.45 16 5 C -0.59 -16.03 7.65 -34.44 -0.26 -16.30 16 6 H 0.05 1.46 5.68 -52.48 -0.30 1.16 16 7 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 8 N -0.91 -27.75 13.65 55.43 0.76 -27.00 16 9 Si 1.07 24.96 29.90 -169.99 -5.08 19.87 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.08 1.46 4.33 37.16 0.16 1.62 16 14 O -0.35 -5.67 8.89 -40.75 -0.36 -6.03 16 15 C 0.49 7.09 7.69 34.26 0.26 7.35 16 16 O -0.51 -8.29 12.95 -19.30 -0.25 -8.54 16 17 C -0.19 -2.02 10.13 -37.85 -0.38 -2.40 16 18 C -0.05 -0.42 8.56 -36.11 -0.31 -0.73 16 19 C -0.12 -1.22 2.49 -90.21 -0.22 -1.44 16 20 H 0.12 1.52 5.34 -51.93 -0.28 1.24 16 21 C -0.13 -1.28 6.45 -25.16 -0.16 -1.44 16 22 C 0.04 0.36 7.63 37.94 0.29 0.65 16 23 O -0.38 -3.91 11.65 -35.23 -0.41 -4.32 16 24 C 0.05 0.44 7.17 37.93 0.27 0.71 16 25 H 0.07 1.37 6.62 -51.93 -0.34 1.03 16 26 H 0.04 0.70 7.68 -51.93 -0.40 0.30 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.70 7.68 -51.93 -0.40 0.30 16 30 H 0.07 1.38 6.62 -51.93 -0.34 1.03 16 31 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 32 H 0.01 0.22 8.00 -51.93 -0.42 -0.20 16 33 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.07 0.68 7.73 -51.93 -0.40 0.28 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.69 7.86 -51.93 -0.41 0.29 16 LS Contribution 345.73 15.07 5.21 5.21 Total: -1.00 -31.03 345.73 -7.20 -38.23 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.02 Total: -0.84 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -0.04 Total: -16.59 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.76 Total: -27.00 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -1.02 Total: -18.89 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.03 -7.20 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835386088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.808 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds