Wall clock time and date at job start Tue Mar 31 2020 07:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 C 1.53001 * 109.47102 * 239.99961 * 2 1 3 5 5 C 1.50700 * 109.47320 * 59.99899 * 4 2 1 6 6 H 1.08000 * 119.99908 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00460 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99885 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47298 * 89.99952 * 9 7 5 11 11 H 1.48501 * 109.46955 * 209.99920 * 9 7 5 12 12 H 1.48493 * 109.46919 * 329.99573 * 9 7 5 13 13 C 1.52995 * 109.46866 * 119.99888 * 2 1 3 14 14 O 1.45196 * 109.47415 * 299.99970 * 13 2 1 15 15 C 1.34796 * 117.00334 * 180.02562 * 14 13 2 16 16 O 1.21531 * 120.00083 * 0.02562 * 15 14 13 17 17 C 1.46951 * 120.00290 * 180.02562 * 15 14 13 18 18 C 1.33081 * 120.00181 * 189.09242 * 17 15 14 19 19 C 1.50698 * 120.00040 * 19.09906 * 18 17 15 20 20 H 1.08996 * 110.80668 * 350.61168 * 19 18 17 21 21 C 1.54813 * 110.91030 * 114.24255 * 19 18 17 22 22 C 1.54096 * 104.19206 * 139.07986 * 21 19 18 23 23 O 1.43743 * 107.29080 * 2.02900 * 22 21 19 24 24 C 1.44375 * 106.97782 * 333.48756 * 23 22 21 25 25 H 1.08991 * 109.47330 * 299.99952 * 1 2 3 26 26 H 1.09005 * 109.46962 * 60.00371 * 1 2 3 27 27 H 1.09007 * 109.46742 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47185 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47003 * 299.99604 * 3 2 1 30 30 H 1.08991 * 109.47083 * 59.99897 * 3 2 1 31 31 H 1.09001 * 109.46918 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.46925 * 299.99807 * 4 2 1 33 33 H 0.96993 * 120.00409 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47176 * 180.02562 * 13 2 1 35 35 H 1.09000 * 109.47548 * 60.00723 * 13 2 1 36 36 H 1.08000 * 119.99821 * 9.08364 * 17 15 14 37 37 H 1.07997 * 120.00315 * 199.10098 * 18 17 15 38 38 H 1.09003 * 110.48364 * 20.39874 * 21 19 18 39 39 H 1.09007 * 110.48630 * 257.75893 * 21 19 18 40 40 H 1.08993 * 109.87898 * 121.45169 * 22 21 19 41 41 H 1.08999 * 109.87876 * 242.60999 * 22 21 19 42 42 H 1.09003 * 110.62172 * 281.56124 * 24 23 22 43 43 H 1.09001 * 110.62151 * 158.56329 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3807 7 6 1.8712 -0.4816 -3.7320 8 7 1.4324 0.1379 -4.8059 9 14 2.9452 -2.0005 -3.9033 10 1 2.0867 -3.2113 -3.9493 11 1 3.7376 -1.9077 -5.1558 12 1 3.8652 -2.0898 -2.7411 13 6 2.0399 -0.7212 1.2492 14 8 1.5560 -0.0368 2.4348 15 6 1.9185 -0.5486 3.6279 16 8 2.6204 -1.5396 3.6760 17 6 1.4652 0.0916 4.8705 18 6 1.9647 -0.2986 6.0407 19 6 3.2652 -1.0583 6.0891 20 1 3.5813 -1.3492 5.0874 21 6 4.3642 -0.2280 6.7959 22 6 5.1100 -1.2547 7.6701 23 8 4.5108 -2.5384 7.4267 24 6 3.1485 -2.2964 7.0143 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7490 -1.2492 33 1 1.6667 -0.1934 -5.6868 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.7267 0.8788 4.8341 37 1 1.4381 -0.0707 6.9556 38 1 3.9161 0.5479 7.4167 39 1 5.0406 0.2119 6.0629 40 1 6.1643 -1.2796 7.3947 41 1 5.0057 -0.9906 8.7225 42 1 2.5202 -2.0732 7.8767 43 1 2.7565 -3.1515 6.4636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835386089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:41 Heat of formation + Delta-G solvation = -121.664549 kcal Electronic energy + Delta-G solvation = -22273.474766 eV Core-core repulsion = 18898.239035 eV Total energy + Delta-G solvation = -3375.235732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.56790 -39.50372 -37.49115 -35.63677 -34.53424 -32.31494 -31.31536 -29.28656 -27.99155 -26.67265 -26.46309 -24.16870 -22.92616 -22.29975 -21.35757 -19.88150 -18.14422 -17.67021 -16.87420 -16.77555 -16.36074 -16.16371 -15.49248 -14.99695 -14.43946 -14.16581 -13.88606 -13.70051 -13.56623 -13.25363 -13.06685 -12.60106 -12.43288 -12.25682 -11.97211 -11.88527 -11.53343 -11.43987 -11.26503 -11.06687 -10.98572 -10.61116 -10.46945 -10.36713 -10.13305 -9.90569 -9.78383 -9.76024 -9.58677 -9.41746 -9.00979 -8.54879 -6.05135 -4.02705 0.81932 2.83337 2.89449 3.30162 3.38239 3.41527 3.65425 4.29733 4.41284 4.44182 4.61610 4.71812 4.76053 4.97228 5.04973 5.12056 5.26408 5.35757 5.36845 5.40141 5.46151 5.49173 5.66509 5.68080 5.78633 5.82430 5.89718 6.08000 6.19082 6.26203 6.47485 6.55926 6.58890 6.65605 6.78961 6.94024 7.04972 7.07635 7.19161 7.33396 7.74738 7.86966 8.52233 8.99255 9.56919 11.07557 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028396 B = 0.003196 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.827526 B = 8757.729851 C = 9284.381175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.049 4.049 3 C -0.127 4.127 4 C -0.003 4.003 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.874 3.126 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.076 3.924 14 O -0.343 6.343 15 C 0.488 3.512 16 O -0.509 6.509 17 C -0.187 4.187 18 C -0.048 4.048 19 C -0.146 4.146 20 H 0.145 0.855 21 C -0.145 4.145 22 C 0.048 3.952 23 O -0.377 6.377 24 C 0.061 3.939 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.263 0.737 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.036 0.504 24.778 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.050 4.050 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.191 1.191 13 C 0.003 3.997 14 O -0.259 6.259 15 C 0.335 3.665 16 O -0.402 6.402 17 C -0.206 4.206 18 C -0.066 4.066 19 C -0.163 4.163 20 H 0.162 0.838 21 C -0.183 4.183 22 C -0.029 4.029 23 O -0.296 6.296 24 C -0.016 4.016 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.153 0.847 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.351 0.014 24.558 24.670 hybrid contribution 0.475 -0.635 -0.291 0.845 sum 2.826 -0.622 24.267 24.439 Atomic orbital electron populations 1.21734 0.94351 1.01026 1.01380 1.20582 0.96493 0.96230 0.91647 1.21727 0.99906 0.95449 1.01372 1.19626 0.96286 0.95550 0.92575 1.21038 1.31892 1.13424 0.88420 0.90214 1.24987 0.95698 0.96741 0.95945 1.69895 1.45857 1.40550 0.97882 0.86867 0.81328 0.83953 0.77676 1.20320 1.21403 1.19080 1.23514 0.98863 0.95965 0.81335 1.86606 1.69358 1.55165 1.14730 1.21630 0.76997 0.82571 0.85256 1.90640 1.35734 1.26324 1.87484 1.22097 1.05700 1.03137 0.89686 1.23620 0.93198 0.92520 0.97279 1.22924 0.92727 0.95238 1.05435 0.83812 1.22962 0.97375 0.98578 0.99345 1.23159 0.98172 0.83127 0.98454 1.88883 1.25055 1.27193 1.88469 1.23519 0.84141 0.97859 0.96034 0.93971 0.91003 0.93810 0.93831 0.91003 0.93979 0.96387 0.96821 0.92742 0.91600 0.91553 0.83734 0.84718 0.90584 0.90143 0.89794 0.92401 0.92392 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.08 37.16 0.30 -2.08 16 2 C -0.05 -0.96 0.61 -154.51 -0.09 -1.05 16 3 C -0.13 -2.37 8.08 37.16 0.30 -2.07 16 4 C 0.00 -0.07 3.11 -27.88 -0.09 -0.16 16 5 C -0.51 -13.81 8.20 -34.44 -0.28 -14.09 16 6 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 9 Si 0.87 21.51 27.47 -169.99 -4.67 16.85 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.08 1.33 4.33 37.15 0.16 1.49 16 14 O -0.34 -5.37 8.89 -40.75 -0.36 -5.73 16 15 C 0.49 6.86 7.72 34.26 0.26 7.12 16 16 O -0.51 -8.18 13.14 -19.29 -0.25 -8.43 16 17 C -0.19 -1.84 10.12 -37.85 -0.38 -2.22 16 18 C -0.05 -0.39 8.76 -36.10 -0.32 -0.70 16 19 C -0.15 -1.43 2.98 -89.76 -0.27 -1.70 16 20 H 0.14 1.88 4.51 -53.52 -0.24 1.64 16 21 C -0.14 -1.15 6.59 -25.20 -0.17 -1.32 16 22 C 0.05 0.40 7.70 37.73 0.29 0.69 16 23 O -0.38 -4.32 11.52 -35.23 -0.41 -4.73 16 24 C 0.06 0.59 7.16 38.21 0.27 0.86 16 25 H 0.04 0.69 7.68 -51.93 -0.40 0.30 16 26 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 27 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 30 H 0.04 0.69 7.68 -51.93 -0.40 0.30 16 31 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 32 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.08 0.47 7.85 -51.93 -0.41 0.06 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.44 8.04 -51.93 -0.42 0.02 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -31.16 343.87 -6.86 -38.02 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -7.02 Total: -1.25 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -0.10 Total: -13.41 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.50 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -1.02 Total: -18.89 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.16 -6.86 -38.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835386089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.647 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds