Wall clock time and date at job start Tue Mar 31 2020 07:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 C 1.53001 * 109.47102 * 239.99961 * 2 1 3 5 5 C 1.50700 * 109.47320 * 59.99899 * 4 2 1 6 6 H 1.08000 * 119.99908 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00460 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99885 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47298 * 89.99952 * 9 7 5 11 11 H 1.48501 * 109.46955 * 209.99920 * 9 7 5 12 12 H 1.48493 * 109.46919 * 329.99573 * 9 7 5 13 13 C 1.52995 * 109.46866 * 119.99888 * 2 1 3 14 14 O 1.45196 * 109.47415 * 299.99970 * 13 2 1 15 15 C 1.34796 * 117.00334 * 180.02562 * 14 13 2 16 16 O 1.21531 * 120.00083 * 0.02562 * 15 14 13 17 17 C 1.46951 * 120.00290 * 180.02562 * 15 14 13 18 18 C 1.33081 * 120.00181 * 189.09242 * 17 15 14 19 19 C 1.50698 * 120.00040 * 19.09906 * 18 17 15 20 20 H 1.08996 * 110.80668 * 350.61168 * 19 18 17 21 21 C 1.54813 * 110.91030 * 114.24255 * 19 18 17 22 22 C 1.54096 * 104.19206 * 139.07986 * 21 19 18 23 23 O 1.43743 * 107.29080 * 2.02900 * 22 21 19 24 24 C 1.44375 * 106.97782 * 333.48756 * 23 22 21 25 25 H 1.08991 * 109.47330 * 299.99952 * 1 2 3 26 26 H 1.09005 * 109.46962 * 60.00371 * 1 2 3 27 27 H 1.09007 * 109.46742 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47185 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47003 * 299.99604 * 3 2 1 30 30 H 1.08991 * 109.47083 * 59.99897 * 3 2 1 31 31 H 1.09001 * 109.46918 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.46925 * 299.99807 * 4 2 1 33 33 H 0.96993 * 120.00409 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47176 * 180.02562 * 13 2 1 35 35 H 1.09000 * 109.47548 * 60.00723 * 13 2 1 36 36 H 1.08000 * 119.99821 * 9.08364 * 17 15 14 37 37 H 1.07997 * 120.00315 * 199.10098 * 18 17 15 38 38 H 1.09003 * 110.48364 * 20.39874 * 21 19 18 39 39 H 1.09007 * 110.48630 * 257.75893 * 21 19 18 40 40 H 1.08993 * 109.87898 * 121.45169 * 22 21 19 41 41 H 1.08999 * 109.87876 * 242.60999 * 22 21 19 42 42 H 1.09003 * 110.62172 * 281.56124 * 24 23 22 43 43 H 1.09001 * 110.62151 * 158.56329 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3807 7 6 1.8712 -0.4816 -3.7320 8 7 1.4324 0.1379 -4.8059 9 14 2.9452 -2.0005 -3.9033 10 1 2.0867 -3.2113 -3.9493 11 1 3.7376 -1.9077 -5.1558 12 1 3.8652 -2.0898 -2.7411 13 6 2.0399 -0.7212 1.2492 14 8 1.5560 -0.0368 2.4348 15 6 1.9185 -0.5486 3.6279 16 8 2.6204 -1.5396 3.6760 17 6 1.4652 0.0916 4.8705 18 6 1.9647 -0.2986 6.0407 19 6 3.2652 -1.0583 6.0891 20 1 3.5813 -1.3492 5.0874 21 6 4.3642 -0.2280 6.7959 22 6 5.1100 -1.2547 7.6701 23 8 4.5108 -2.5384 7.4267 24 6 3.1485 -2.2964 7.0143 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 3.1300 -0.7216 -1.2490 32 1 1.6767 -1.7490 -1.2492 33 1 1.6667 -0.1934 -5.6868 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7489 1.2492 36 1 0.7267 0.8788 4.8341 37 1 1.4381 -0.0707 6.9556 38 1 3.9161 0.5479 7.4167 39 1 5.0406 0.2119 6.0629 40 1 6.1643 -1.2796 7.3947 41 1 5.0057 -0.9906 8.7225 42 1 2.5202 -2.0732 7.8767 43 1 2.7565 -3.1515 6.4636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835386089.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:41 Heat of formation + Delta-G solvation = -139.995480 kcal Electronic energy + Delta-G solvation = -22274.269655 eV Core-core repulsion = 18898.239035 eV Total energy + Delta-G solvation = -3376.030620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62265 -40.31726 -38.86188 -37.00028 -35.35585 -34.41424 -32.04034 -30.12743 -29.78114 -28.03365 -27.99788 -25.34773 -24.11699 -23.46467 -22.16000 -20.83801 -19.74047 -18.93335 -18.65152 -17.61836 -17.27944 -17.26482 -16.32476 -16.19109 -15.98124 -15.42573 -15.31028 -14.94907 -14.60112 -14.28606 -14.24515 -14.09596 -13.88247 -13.68817 -13.06825 -12.87746 -12.71524 -12.68376 -12.56728 -12.30358 -12.21626 -12.14014 -12.11398 -11.80786 -11.77886 -11.36720 -11.27628 -10.96971 -10.87359 -10.72785 -10.60698 -10.20415 -8.24228 -6.25307 0.03959 1.34845 1.37158 1.47170 1.79327 1.90918 2.37252 2.98269 3.10539 3.59322 3.70155 3.81779 3.91755 3.91862 3.99338 4.14327 4.16664 4.33005 4.35026 4.49078 4.55112 4.56258 4.66163 4.74239 4.83152 4.84657 4.95849 4.97939 5.02859 5.07932 5.09168 5.19187 5.23675 5.32067 5.35543 5.39413 5.52195 5.62312 5.70472 5.79308 5.90824 6.35578 6.77254 6.81936 7.37219 8.91484 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028396 B = 0.003196 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.827526 B = 8757.729851 C = 9284.381175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 C -0.121 4.121 4 C -0.003 4.003 5 C -0.505 4.505 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.935 3.065 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.252 1.252 13 C 0.087 3.913 14 O -0.347 6.347 15 C 0.481 3.519 16 O -0.537 6.537 17 C -0.205 4.205 18 C -0.018 4.018 19 C -0.155 4.155 20 H 0.109 0.891 21 C -0.139 4.139 22 C 0.042 3.958 23 O -0.408 6.408 24 C 0.060 3.940 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.264 0.736 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.172 0.828 37 H 0.181 0.819 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 0.503 28.064 28.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.049 4.049 3 C -0.178 4.178 4 C -0.040 4.040 5 C -0.543 4.543 6 H 0.069 0.931 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.760 3.240 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.176 1.176 13 C 0.013 3.987 14 O -0.263 6.263 15 C 0.330 3.670 16 O -0.431 6.431 17 C -0.223 4.223 18 C -0.036 4.036 19 C -0.173 4.173 20 H 0.126 0.874 21 C -0.176 4.176 22 C -0.035 4.035 23 O -0.328 6.328 24 C -0.016 4.016 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.189 0.811 37 H 0.198 0.802 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.438 0.016 27.870 27.976 hybrid contribution 0.460 -0.607 -1.200 1.422 sum 2.898 -0.591 26.669 26.833 Atomic orbital electron populations 1.21652 0.93819 1.01137 1.01231 1.20453 0.96913 0.96340 0.91220 1.21644 0.99957 0.94978 1.01213 1.19571 0.96081 0.95573 0.92796 1.21305 1.30522 1.12419 0.90010 0.93057 1.25832 0.97392 0.99972 0.95746 1.70036 1.47977 1.42667 0.98479 0.85880 0.79829 0.80259 0.78028 1.19529 1.21240 1.17565 1.23111 0.98512 0.95520 0.81553 1.86588 1.69627 1.55176 1.14873 1.22526 0.76317 0.82527 0.85638 1.90668 1.37033 1.27702 1.87702 1.22224 1.07416 1.04896 0.87802 1.23988 0.91611 0.89682 0.98363 1.22843 0.94444 0.96208 1.03781 0.87400 1.22951 0.96629 0.98747 0.99293 1.23346 0.98147 0.82143 0.99814 1.88846 1.26106 1.29110 1.88722 1.23594 0.83940 0.97213 0.96868 0.91548 0.93601 0.93575 0.93656 0.93590 0.91582 0.96456 0.96567 0.92725 0.91896 0.91751 0.81106 0.80209 0.87809 0.90836 0.89798 0.90234 0.89496 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 8.08 71.98 0.58 -3.88 16 2 C -0.05 -1.88 0.61 -52.18 -0.03 -1.91 16 3 C -0.12 -4.45 8.08 71.98 0.58 -3.87 16 4 C 0.00 -0.13 3.11 29.85 0.09 -0.03 16 5 C -0.50 -27.93 8.20 25.60 0.21 -27.72 16 6 H 0.05 3.08 5.92 -2.91 -0.02 3.06 16 7 C 0.01 0.40 5.47 84.65 0.46 0.87 16 8 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 9 Si 0.94 44.50 27.47 68.60 1.88 46.38 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 12 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 13 C 0.09 2.94 4.33 71.98 0.31 3.25 16 14 O -0.35 -10.29 8.89 -57.07 -0.51 -10.80 16 15 C 0.48 12.79 7.72 70.10 0.54 13.33 16 16 O -0.54 -17.08 13.14 19.74 0.26 -16.82 16 17 C -0.20 -3.37 10.12 23.40 0.24 -3.13 16 18 C -0.02 -0.23 8.76 24.53 0.21 -0.01 16 19 C -0.15 -2.70 2.98 -10.24 -0.03 -2.73 16 20 H 0.11 2.79 4.51 -27.48 -0.12 2.66 16 21 C -0.14 -1.83 6.59 31.58 0.21 -1.62 16 22 C 0.04 0.61 7.70 72.35 0.56 1.17 16 23 O -0.41 -8.84 11.52 -148.98 -1.72 -10.56 16 24 C 0.06 1.04 7.16 72.67 0.52 1.56 16 25 H 0.07 2.09 7.68 -2.39 -0.02 2.07 16 26 H 0.04 1.90 6.62 -2.38 -0.02 1.89 16 27 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 29 H 0.04 1.91 6.62 -2.38 -0.02 1.90 16 30 H 0.07 2.09 7.68 -2.39 -0.02 2.07 16 31 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 32 H 0.02 0.73 7.57 -2.38 -0.02 0.72 16 33 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 38 H 0.10 0.80 7.85 -2.39 -0.02 0.78 16 39 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 0.98 8.04 -2.39 -0.02 0.96 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -69.72 343.87 5.48 -64.24 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.81 Total: 10.98 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 4.46 Total: -24.73 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.30 Total: -58.70 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.96 Total: -38.17 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Total: -69.72 5.48 -64.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835386089.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.757 kcal (2) G-P(sol) polarization free energy of solvation -69.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds