Wall clock time and date at job start Tue Mar 31 2020 07:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47575 * 2 1 4 4 C 1.53002 * 109.46627 * 120.00249 * 2 1 3 5 5 C 1.50706 * 109.47153 * 299.99409 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.52996 * 109.47326 * 239.99598 * 2 1 3 14 14 O 1.45203 * 109.47110 * 60.00253 * 13 2 1 15 15 C 1.34796 * 117.00085 * 179.97438 * 14 13 2 16 16 O 1.21538 * 120.00211 * 0.02562 * 15 14 13 17 17 C 1.46951 * 120.00057 * 180.02562 * 15 14 13 18 18 C 1.33079 * 120.00404 * 179.97438 * 17 15 14 19 19 C 1.50695 * 120.00248 * 180.02562 * 18 17 15 20 20 H 1.09002 * 110.43539 * 0.70304 * 19 18 17 21 21 C 1.54812 * 110.48718 * 238.15789 * 19 18 17 22 22 C 1.55227 * 101.98579 * 220.51659 * 21 19 18 23 23 O 1.44377 * 103.56710 * 36.88485 * 22 21 19 24 24 C 1.43745 * 106.97441 * 320.00756 * 23 22 21 25 25 H 1.08992 * 109.47521 * 300.00580 * 1 2 3 26 26 H 1.09004 * 109.46549 * 60.00337 * 1 2 3 27 27 H 1.08997 * 109.47072 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47158 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46704 * 300.00181 * 3 2 1 30 30 H 1.09002 * 109.46915 * 59.99684 * 3 2 1 31 31 H 1.09004 * 109.47178 * 180.02562 * 4 2 1 32 32 H 1.08993 * 109.47411 * 59.99881 * 4 2 1 33 33 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 34 34 H 1.09007 * 109.47383 * 180.02562 * 13 2 1 35 35 H 1.09001 * 109.47155 * 300.00762 * 13 2 1 36 36 H 1.08004 * 119.99753 * 0.02562 * 17 15 14 37 37 H 1.08004 * 119.99842 * 0.02562 * 18 17 15 38 38 H 1.08996 * 110.90878 * 338.63998 * 21 19 18 39 39 H 1.08998 * 110.91049 * 102.24746 * 21 19 18 40 40 H 1.09001 * 110.52224 * 278.37967 * 22 21 19 41 41 H 1.09004 * 110.64452 * 155.43497 * 22 21 19 42 42 H 1.09001 * 109.88232 * 267.09669 * 24 23 22 43 43 H 1.08998 * 110.00684 * 146.00886 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4798 6 1 0.9165 0.8671 2.3806 7 6 1.8710 -0.4816 3.7320 8 7 2.6229 -1.5538 3.8528 9 14 1.2478 0.3987 5.2572 10 1 1.7378 -0.3048 6.4698 11 1 1.7474 1.7972 5.2605 12 1 -0.2372 0.4035 5.2539 13 6 2.0401 -0.7213 -1.2491 14 8 1.5561 -0.0369 -2.4348 15 6 1.9188 -0.5488 -3.6278 16 8 2.6199 -1.5404 -3.6758 17 6 1.4664 0.0920 -4.8705 18 6 1.8249 -0.4131 -6.0484 19 6 1.3615 0.2444 -7.3227 20 1 0.7556 1.1226 -7.0993 21 6 0.5627 -0.7585 -8.1904 22 6 1.0744 -0.4282 -9.6182 23 8 2.4725 -0.1298 -9.4164 24 6 2.5680 0.6304 -8.2002 25 1 -0.3634 0.5139 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1299 -0.7210 1.2496 32 1 1.6766 -1.7489 1.2492 33 1 2.9464 -2.0110 3.0608 34 1 3.1301 -0.7217 -1.2489 35 1 1.6766 -1.7490 -1.2492 36 1 0.8437 0.9734 -4.8279 37 1 2.4479 -1.2943 -6.0910 38 1 0.8042 -1.7861 -7.9190 39 1 -0.5089 -0.5772 -8.1075 40 1 0.5509 0.4391 -10.0206 41 1 0.9568 -1.2885 -10.2772 42 1 2.5361 1.6963 -8.4258 43 1 3.4958 0.3891 -7.6815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835386091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:46 Heat of formation + Delta-G solvation = -144.278272 kcal Electronic energy + Delta-G solvation = -21729.658968 eV Core-core repulsion = 18353.442632 eV Total energy + Delta-G solvation = -3376.216336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31063 -39.80727 -37.40010 -35.57009 -34.87447 -32.51595 -31.42212 -29.46170 -27.01599 -26.49648 -26.48947 -24.33550 -23.10777 -22.63737 -21.10149 -19.83890 -18.55759 -17.80144 -16.92592 -16.52079 -16.34599 -16.11439 -15.96717 -15.41625 -14.37584 -14.23979 -13.81786 -13.71345 -13.47918 -13.26753 -12.61271 -12.60251 -12.42534 -12.21096 -12.01484 -11.79552 -11.77784 -11.33181 -11.28946 -11.15671 -10.95372 -10.64189 -10.53301 -10.38184 -10.30526 -10.17218 -10.09063 -9.85909 -9.69961 -9.45321 -8.50819 -8.32915 -6.34422 -4.03464 0.90555 2.85231 2.93055 3.43890 3.45488 3.46409 3.64073 4.07211 4.18459 4.38970 4.54555 4.64329 4.67140 4.72813 4.94269 5.03043 5.20397 5.26694 5.27884 5.37033 5.40353 5.42501 5.45315 5.56028 5.71134 5.84242 5.97165 6.05154 6.09247 6.27204 6.37884 6.44052 6.54475 6.62751 6.72332 6.98486 7.02001 7.06155 7.30359 7.45679 7.88258 8.20510 8.46327 8.88436 9.67267 11.05415 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.053359 B = 0.002478 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.624151 B =11296.543557 C =11416.717517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.052 4.052 3 C -0.125 4.125 4 C 0.021 3.979 5 C -0.590 4.590 6 H 0.055 0.945 7 C 0.013 3.987 8 N -0.914 5.914 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.079 3.921 14 O -0.345 6.345 15 C 0.487 3.513 16 O -0.517 6.517 17 C -0.179 4.179 18 C -0.058 4.058 19 C -0.102 4.102 20 H 0.097 0.903 21 C -0.147 4.147 22 C 0.045 3.955 23 O -0.377 6.377 24 C 0.054 3.946 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.268 0.732 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 5.177 -24.495 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.052 4.052 3 C -0.182 4.182 4 C -0.016 4.016 5 C -0.628 4.628 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.550 5.550 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C 0.005 3.995 14 O -0.261 6.261 15 C 0.333 3.667 16 O -0.409 6.409 17 C -0.198 4.198 18 C -0.076 4.076 19 C -0.121 4.121 20 H 0.116 0.884 21 C -0.185 4.185 22 C -0.031 4.031 23 O -0.295 6.295 24 C -0.023 4.023 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.157 0.843 37 H 0.150 0.850 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.474 4.794 -22.923 23.843 hybrid contribution -0.106 -0.063 -1.380 1.386 sum -4.580 4.731 -24.304 25.180 Atomic orbital electron populations 1.21707 0.94631 1.00907 1.00988 1.20656 0.96273 0.96184 0.92074 1.21708 0.99939 0.95605 1.00993 1.19258 0.95707 0.95255 0.91381 1.21940 1.34837 1.14459 0.91538 0.92689 1.25822 0.95297 0.96545 1.01415 1.70779 1.32702 1.18091 1.33461 0.83560 0.75883 0.75296 0.75670 1.20877 1.21476 1.21479 1.23504 0.98873 0.95898 0.81181 1.86582 1.69241 1.55546 1.14715 1.21481 0.77702 0.82195 0.85319 1.90845 1.35936 1.25621 1.88460 1.22055 1.05105 1.02948 0.89680 1.23698 0.94043 0.97538 0.92351 1.21837 0.97512 0.99198 0.93508 0.88449 1.23266 1.00644 1.00243 0.94349 1.23640 0.82089 1.00764 0.96612 1.88903 1.24923 1.74046 1.41672 1.23218 0.98432 0.95973 0.84630 0.91396 0.94082 0.93879 0.93863 0.94068 0.91400 0.97291 0.97292 0.92147 0.91675 0.91695 0.84327 0.84957 0.89741 0.89455 0.91892 0.88636 0.91514 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 2 C -0.05 -1.06 0.61 -154.51 -0.09 -1.16 16 3 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 4 C 0.02 0.53 3.35 -27.88 -0.09 0.43 16 5 C -0.59 -16.09 7.65 -34.44 -0.26 -16.35 16 6 H 0.05 1.46 5.68 -52.49 -0.30 1.16 16 7 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 8 N -0.91 -27.87 13.65 55.43 0.76 -27.12 16 9 Si 1.07 25.04 29.90 -169.99 -5.08 19.96 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 13 C 0.08 1.48 4.33 37.16 0.16 1.64 16 14 O -0.34 -5.81 8.89 -40.75 -0.36 -6.17 16 15 C 0.49 7.51 7.91 34.26 0.27 7.78 16 16 O -0.52 -9.40 16.01 -19.29 -0.31 -9.71 16 17 C -0.18 -1.92 9.77 -37.85 -0.37 -2.28 16 18 C -0.06 -0.52 8.07 -36.10 -0.29 -0.81 16 19 C -0.10 -0.67 3.37 -90.24 -0.30 -0.97 16 20 H 0.10 0.50 7.87 -51.93 -0.41 0.09 16 21 C -0.15 -0.85 6.72 -24.60 -0.17 -1.02 16 22 C 0.05 0.27 7.72 38.34 0.30 0.57 16 23 O -0.38 -3.37 11.52 -35.23 -0.41 -3.78 16 24 C 0.05 0.39 7.36 37.73 0.28 0.67 16 25 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 26 H 0.04 0.70 7.68 -51.93 -0.40 0.30 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.70 7.68 -51.93 -0.40 0.30 16 30 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 31 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 32 H 0.01 0.23 8.00 -51.93 -0.42 -0.18 16 33 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.14 1.17 7.90 -52.48 -0.41 0.75 16 37 H 0.13 1.35 7.49 -52.48 -0.39 0.96 16 38 H 0.08 0.54 7.86 -51.93 -0.41 0.13 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.67 7.69 -51.93 -0.40 0.27 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -32.25 351.21 -7.29 -39.54 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -7.11 Total: -2.54 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.07 Total: -15.47 kcal Atomic # 7 Polarization: -27.87 SS G_CDS: 0.76 Total: -27.12 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -1.08 Total: -19.66 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.25 -7.29 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835386091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.738 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds