Wall clock time and date at job start Tue Mar 31 2020 07:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 120.00066 * 2 1 4 4 H 1.09001 * 109.89851 * 359.06529 * 3 2 1 5 5 O 1.43239 * 109.83077 * 238.13194 * 3 2 1 6 6 C 1.43651 * 109.97044 * 242.20099 * 5 3 2 7 7 C 1.54947 * 105.13541 * 335.56862 * 6 5 3 8 8 C 1.54383 * 109.83069 * 119.99775 * 3 2 1 9 9 H 1.09002 * 110.84833 * 22.67980 * 8 3 2 10 10 C 1.50707 * 111.02215 * 259.13945 * 8 3 2 11 11 O 1.20819 * 119.99805 * 2.89126 * 10 8 3 12 12 O 1.34225 * 119.99713 * 182.89811 * 10 8 3 13 13 C 1.45207 * 116.99678 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47138 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47155 * 300.00556 * 14 13 12 16 16 C 1.53008 * 109.46795 * 60.00056 * 14 13 12 17 17 C 1.52998 * 109.47126 * 180.02562 * 14 13 12 18 18 C 1.50703 * 109.46919 * 180.02562 * 17 14 13 19 19 H 1.08000 * 120.00267 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99818 * 180.02562 * 18 17 14 21 21 N 1.31515 * 119.99844 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00133 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46907 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47231 * 119.99875 * 22 20 18 25 25 H 1.48503 * 109.47008 * 239.99896 * 22 20 18 26 26 H 1.07997 * 119.99632 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99958 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99632 * 179.97438 * 2 1 3 29 29 H 1.09001 * 110.30552 * 216.65680 * 6 5 3 30 30 H 1.09001 * 110.39477 * 94.52867 * 6 5 3 31 31 H 1.09008 * 111.12557 * 278.53106 * 7 6 5 32 32 H 1.09000 * 111.12530 * 154.36522 * 7 6 5 33 33 H 1.08991 * 109.46985 * 300.00079 * 13 12 10 34 34 H 1.08997 * 109.46788 * 59.99793 * 13 12 10 35 35 H 1.08996 * 109.47668 * 60.00136 * 15 14 13 36 36 H 1.08999 * 109.46913 * 180.02562 * 15 14 13 37 37 H 1.09006 * 109.46884 * 299.99298 * 15 14 13 38 38 H 1.09001 * 109.47015 * 60.00267 * 16 14 13 39 39 H 1.09002 * 109.46567 * 180.02562 * 16 14 13 40 40 H 1.08997 * 109.46924 * 299.99998 * 16 14 13 41 41 H 1.09001 * 109.47355 * 300.00144 * 17 14 13 42 42 H 1.08997 * 109.46876 * 60.00198 * 17 14 13 43 43 H 0.96999 * 119.99884 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3615 2.1387 -0.0167 5 8 2.9226 1.3702 -1.1443 6 6 4.2937 1.4547 -0.7243 7 6 4.2436 2.0590 0.7015 8 6 2.9542 1.3956 1.2577 9 1 3.1686 0.4028 1.6535 10 6 2.3157 2.2639 2.3110 11 8 1.2195 2.7354 2.1220 12 8 2.9649 2.5135 3.4590 13 6 2.2897 3.3585 4.4278 14 6 3.1771 3.5282 5.6626 15 6 3.4524 2.1579 6.2850 16 6 4.5007 4.1779 5.2540 17 6 2.4654 4.4180 6.6837 18 6 3.3397 4.5856 7.8997 19 1 4.3065 4.1059 7.9399 20 6 2.9054 5.3514 8.9607 21 7 1.7283 5.9360 8.9115 22 14 3.9894 5.5599 10.4677 23 1 5.2547 4.8068 10.2752 24 1 4.2946 7.0000 10.6626 25 1 3.2803 5.0380 11.6636 26 1 -0.5399 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 4.8545 2.1081 -1.3927 30 1 4.7451 0.4628 -0.6992 31 1 4.1428 3.1438 0.6651 32 1 5.1180 1.7669 1.2830 33 1 2.0933 4.3345 3.9842 34 1 1.3470 2.8954 4.7192 35 1 3.9593 1.5236 5.5578 36 1 4.0842 2.2789 7.1650 37 1 2.5094 1.6950 6.5762 38 1 4.3046 5.1542 4.8105 39 1 5.1330 4.2984 6.1336 40 1 5.0075 3.5436 4.5267 41 1 2.2689 5.3943 6.2405 42 1 1.5226 3.9547 6.9747 43 1 1.4229 6.4751 9.6578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835387948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:56 Heat of formation + Delta-G solvation = -131.919075 kcal Electronic energy + Delta-G solvation = -22661.318134 eV Core-core repulsion = 19285.637733 eV Total energy + Delta-G solvation = -3375.680401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87836 -39.31752 -37.20077 -35.46961 -34.04948 -32.74708 -32.31476 -28.94042 -27.35921 -26.51857 -26.45212 -24.19243 -22.89243 -22.60203 -20.49806 -20.11822 -18.34274 -17.81262 -16.84696 -16.63113 -16.24105 -16.00942 -15.65793 -14.74163 -14.57121 -14.19233 -13.92756 -13.55721 -13.42215 -13.15001 -12.79083 -12.43382 -12.31632 -12.09267 -12.05298 -11.82678 -11.48415 -11.31268 -11.26049 -11.01129 -10.84331 -10.64660 -10.51095 -10.35078 -10.33800 -10.21220 -9.93359 -9.78117 -9.61012 -9.24997 -8.96913 -8.39821 -6.03718 -4.04994 1.94844 2.22829 2.72005 3.28550 3.36655 3.39572 3.68295 4.06601 4.30356 4.41478 4.52065 4.76547 4.79947 4.96060 4.99836 5.13085 5.31994 5.39071 5.44827 5.46670 5.47345 5.56492 5.65231 5.77210 5.78622 5.99348 6.14622 6.33147 6.35024 6.46508 6.49966 6.57800 6.66824 6.67365 6.76065 7.06963 7.07365 7.09717 7.57581 7.68910 7.84456 7.94898 8.36377 8.99584 9.58366 11.07977 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034175 B = 0.003301 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.107034 B = 8479.873510 C = 8877.777792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.175 4.175 3 C 0.120 3.880 4 H 0.105 0.895 5 O -0.370 6.370 6 C 0.049 3.951 7 C -0.143 4.143 8 C -0.113 4.113 9 H 0.122 0.878 10 C 0.469 3.531 11 O -0.507 6.507 12 O -0.346 6.346 13 C 0.078 3.922 14 C -0.058 4.058 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.034 3.966 18 C -0.510 4.510 19 H 0.062 0.938 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.890 3.110 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.152 -11.012 -17.341 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.193 4.193 3 C 0.063 3.937 4 H 0.122 0.878 5 O -0.289 6.289 6 C -0.027 4.027 7 C -0.181 4.181 8 C -0.132 4.132 9 H 0.140 0.860 10 C 0.311 3.689 11 O -0.396 6.396 12 O -0.261 6.261 13 C 0.005 3.995 14 C -0.059 4.059 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.003 4.003 18 C -0.548 4.548 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.131 0.869 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.640 -10.734 -17.457 20.814 hybrid contribution 0.349 0.227 1.264 1.330 sum 3.988 -10.507 -16.194 19.711 Atomic orbital electron populations 1.23959 0.95820 1.02427 0.97570 1.23078 0.96277 0.97710 1.02211 1.21782 0.91775 0.97133 0.83051 0.87774 1.88513 1.15927 1.95124 1.29333 1.23431 0.84063 1.00575 0.94616 1.23279 0.96653 1.01741 0.96383 1.22545 0.96701 1.00399 0.93560 0.85961 1.22964 0.84069 0.79239 0.82625 1.90655 1.20718 1.49314 1.78908 1.86483 1.49022 1.64280 1.26354 1.23553 0.96045 0.92520 0.87341 1.20820 0.95501 0.97482 0.92058 1.21718 1.01115 0.95221 1.00261 1.21714 0.96904 0.98921 1.00735 1.19133 0.95475 0.93568 0.92095 1.21185 1.03050 1.30056 1.00481 0.92009 1.25019 0.95096 0.95817 0.98599 1.69976 1.18811 1.32929 1.31739 0.86558 0.80689 0.77828 0.83070 1.19709 1.21085 1.21090 0.87937 0.87940 0.86936 0.89036 0.91621 0.89517 0.88160 0.91547 0.91544 0.94241 0.91516 0.93767 0.93767 0.91528 0.94240 0.96342 0.96339 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 14.32 29.01 0.42 -1.17 16 2 C -0.17 -1.79 9.02 -36.03 -0.33 -2.12 16 3 C 0.12 1.37 3.33 -27.16 -0.09 1.28 16 4 H 0.10 1.37 6.51 -51.93 -0.34 1.03 16 5 O -0.37 -4.19 11.00 -35.23 -0.39 -4.58 16 6 C 0.05 0.40 7.78 38.19 0.30 0.70 16 7 C -0.14 -1.26 6.60 -24.48 -0.16 -1.43 16 8 C -0.11 -1.22 3.01 -89.82 -0.27 -1.49 16 9 H 0.12 1.12 7.84 -51.93 -0.41 0.71 16 10 C 0.47 6.89 7.27 36.01 0.26 7.15 16 11 O -0.51 -8.80 15.21 -18.74 -0.29 -9.08 16 12 O -0.35 -5.49 8.88 -39.24 -0.35 -5.84 16 13 C 0.08 1.42 4.32 37.16 0.16 1.58 16 14 C -0.06 -1.16 0.61 -154.50 -0.09 -1.25 16 15 C -0.13 -2.34 8.08 37.16 0.30 -2.04 16 16 C -0.13 -2.31 8.08 37.16 0.30 -2.01 16 17 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 18 C -0.51 -13.57 7.65 -34.44 -0.26 -13.83 16 19 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 22 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.10 1.06 7.85 -52.49 -0.41 0.65 16 27 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.11 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.83 8.04 -51.92 -0.42 0.41 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 34 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 35 H 0.04 0.64 7.68 -51.93 -0.40 0.24 16 36 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 40 H 0.04 0.63 7.68 -51.93 -0.40 0.24 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -30.51 350.99 -6.84 -37.35 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.14 Total: -1.20 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 0.32 Total: -12.45 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -1.02 Total: -19.50 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.51 -6.84 -37.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835387948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.574 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds