Wall clock time and date at job start Tue Mar 31 2020 07:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47249 * 2 1 4 4 C 1.53003 * 109.47098 * 120.00423 * 2 1 3 5 5 C 1.50702 * 109.46878 * 299.99363 * 4 2 1 6 6 O 1.20763 * 120.00124 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99878 * 179.72241 * 5 4 2 8 8 O 1.45200 * 109.47210 * 180.27576 * 7 5 4 9 9 C 1.34222 * 117.00373 * 180.02562 * 8 7 5 10 10 O 1.20830 * 120.00005 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00330 * 180.02562 * 9 8 7 12 12 C 1.53002 * 109.47166 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46862 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00559 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99776 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99975 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99967 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47343 * 59.99538 * 17 15 13 19 19 H 1.48504 * 109.46994 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47439 * 299.99601 * 17 15 13 21 21 C 1.53008 * 109.46646 * 239.99593 * 2 1 3 22 22 C 1.53008 * 117.49205 * 128.74889 * 21 2 1 23 23 C 1.52996 * 117.49362 * 60.09342 * 21 2 1 24 24 H 1.09003 * 109.46745 * 299.99893 * 1 2 3 25 25 H 1.08993 * 109.47157 * 59.99468 * 1 2 3 26 26 H 1.09000 * 109.47059 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46913 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47300 * 300.00019 * 3 2 1 29 29 H 1.09003 * 109.47160 * 60.00361 * 3 2 1 30 30 H 1.09004 * 109.47205 * 179.97438 * 4 2 1 31 31 H 1.08994 * 109.47547 * 59.99311 * 4 2 1 32 32 H 1.08994 * 109.47178 * 300.27850 * 7 5 4 33 33 H 1.09006 * 109.46629 * 60.28046 * 7 5 4 34 34 H 1.09001 * 109.47215 * 299.99820 * 11 9 8 35 35 H 1.09003 * 109.47211 * 60.00015 * 11 9 8 36 36 H 1.09001 * 109.47593 * 299.99880 * 12 11 9 37 37 H 1.09004 * 109.47278 * 60.00321 * 12 11 9 38 38 H 0.97000 * 119.99879 * 179.97438 * 16 15 13 39 39 H 1.08995 * 115.55141 * 274.41642 * 21 2 1 40 40 H 1.08994 * 117.49938 * 0.02562 * 22 21 2 41 41 H 1.08998 * 117.49567 * 145.02142 * 22 21 2 42 42 H 1.09004 * 117.49547 * 214.97395 * 23 21 2 43 43 H 1.08995 * 117.50532 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5378 -0.0109 2.4797 6 8 0.8432 0.9708 2.3689 7 6 1.8967 -0.5295 3.8484 8 8 1.2916 0.3173 4.8608 9 6 1.5163 -0.0100 6.1430 10 8 2.1966 -0.9721 6.4106 11 6 0.9202 0.8223 7.2488 12 6 1.3263 0.2373 8.6030 13 6 0.7307 1.0701 9.7089 14 1 0.1236 1.9307 9.4698 15 6 0.9617 0.7339 11.0260 16 7 1.7014 -0.3138 11.3171 17 14 0.2240 1.7664 12.3967 18 1 -1.2563 1.7604 12.2792 19 1 0.6181 1.1986 13.7111 20 1 0.7234 3.1608 12.2897 21 6 2.0399 -0.7214 -1.2493 22 6 3.0763 0.0039 -2.1102 23 6 1.6373 -0.1484 -2.6096 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4423 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1301 -0.7218 1.2490 31 1 1.6767 -1.7489 1.2493 32 1 1.5272 -1.5489 3.9591 33 1 2.9802 -0.5207 3.9676 34 1 1.2859 1.8462 7.1705 35 1 -0.1664 0.8170 7.1623 36 1 0.9603 -0.7864 8.6812 37 1 2.4129 0.2424 8.6899 38 1 1.8642 -0.5502 12.2437 39 1 2.1252 -1.8047 -1.1647 40 1 3.3951 0.9945 -1.7863 41 1 3.8431 -0.6025 -2.5923 42 1 1.4581 -0.8548 -3.4201 43 1 1.0089 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837739317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:37 Heat of formation + Delta-G solvation = -115.300798 kcal Electronic energy + Delta-G solvation = -21727.335192 eV Core-core repulsion = 18352.375413 eV Total energy + Delta-G solvation = -3374.959779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72686 -39.83941 -38.36888 -36.07366 -33.89616 -33.59761 -31.28541 -30.35660 -27.61556 -27.42781 -25.74788 -23.77517 -22.55181 -22.17167 -20.02334 -19.80535 -18.68288 -17.40878 -17.00011 -16.62098 -16.31442 -15.85182 -15.54378 -15.30188 -14.49788 -14.42870 -14.33137 -13.93182 -13.65600 -13.46973 -12.76095 -12.37164 -12.34739 -12.24301 -12.04305 -11.92484 -11.62082 -11.43438 -11.24705 -11.21999 -11.03072 -10.94402 -10.67309 -10.61931 -10.53928 -10.20077 -10.05337 -10.01388 -9.69328 -9.40026 -9.19419 -8.38001 -6.02075 -4.06949 1.71428 2.75610 2.76042 3.33176 3.37563 3.39813 3.45523 3.86602 4.28948 4.40769 4.44666 4.54743 4.69971 4.77225 4.90004 4.99217 5.05677 5.11585 5.18530 5.25184 5.32829 5.33306 5.39610 5.51134 5.53545 5.54111 5.69654 5.76759 5.79697 5.82056 6.01242 6.11448 6.18070 6.18660 6.20895 6.56448 6.86806 7.34502 7.65104 7.71719 7.96956 8.20960 8.37201 8.99803 9.57079 11.08901 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.053846 B = 0.002408 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.873310 B =11627.228841 C =11865.284832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.021 4.021 3 C -0.159 4.159 4 C -0.154 4.154 5 C 0.355 3.645 6 O -0.418 6.418 7 C 0.010 3.990 8 O -0.349 6.349 9 C 0.457 3.543 10 O -0.506 6.506 11 C -0.103 4.103 12 C 0.034 3.966 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.144 4.144 22 C -0.185 4.185 23 C -0.178 4.178 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.276 -1.016 -27.079 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 C -0.216 4.216 4 C -0.191 4.191 5 C 0.228 3.772 6 O -0.290 6.290 7 C -0.065 4.065 8 O -0.267 6.267 9 C 0.301 3.699 10 O -0.392 6.392 11 C -0.140 4.140 12 C -0.004 4.004 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.162 4.162 22 C -0.222 4.222 23 C -0.214 4.214 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.188 -0.895 -26.927 26.968 hybrid contribution -0.093 0.090 0.706 0.718 sum 1.095 -0.805 -26.221 26.256 Atomic orbital electron populations 1.22082 0.93732 1.01774 1.03381 1.19858 0.96110 0.94974 0.91194 1.22235 1.00490 0.95381 1.03451 1.22094 1.03283 1.01142 0.92598 1.24464 0.78008 0.84163 0.90562 1.90326 1.27828 1.22492 1.88344 1.23315 1.00362 0.95947 0.86830 1.86675 1.69420 1.54115 1.16450 1.24913 0.78069 0.84556 0.82390 1.90638 1.36742 1.28175 1.83659 1.21788 1.01517 0.98982 0.91717 1.19024 0.97812 0.96674 0.86849 1.21122 1.32224 1.12569 0.90819 0.92310 1.25023 0.95174 0.95236 0.98912 1.69981 1.37999 1.25937 1.18915 0.86587 0.79572 0.80417 0.80989 1.20148 1.21264 1.20145 1.22348 1.03792 0.98830 0.91260 1.23171 0.92427 1.02680 1.03942 1.22930 0.98196 1.03308 0.97008 0.90209 0.92686 0.93093 0.92736 0.92693 0.90113 0.87905 0.87976 0.88198 0.88206 0.88803 0.88804 0.95573 0.95579 0.92785 0.87826 0.88048 0.89139 0.89052 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.02 37.16 0.30 -1.06 16 2 C -0.02 -0.17 0.62 -154.50 -0.10 -0.26 16 3 C -0.16 -1.38 6.77 37.15 0.25 -1.13 16 4 C -0.15 -1.13 4.69 -27.88 -0.13 -1.26 16 5 C 0.35 3.83 6.65 -29.03 -0.19 3.64 16 6 O -0.42 -5.73 11.50 -13.71 -0.16 -5.89 16 7 C 0.01 0.13 5.88 36.01 0.21 0.34 16 8 O -0.35 -5.89 9.75 -45.90 -0.45 -6.34 16 9 C 0.46 8.98 7.96 36.00 0.29 9.27 16 10 O -0.51 -11.20 15.73 -18.75 -0.30 -11.49 16 11 C -0.10 -2.12 5.75 -27.88 -0.16 -2.28 16 12 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 13 C -0.53 -14.84 9.11 -34.44 -0.31 -15.16 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 17 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.14 -0.97 5.15 -90.61 -0.47 -1.44 16 22 C -0.19 -1.18 9.57 -26.69 -0.26 -1.44 16 23 C -0.18 -1.15 9.38 -26.69 -0.25 -1.40 16 24 H 0.08 0.88 5.52 -51.93 -0.29 0.59 16 25 H 0.05 0.46 7.29 -51.93 -0.38 0.08 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.43 6.97 -51.93 -0.36 0.07 16 28 H 0.05 0.45 7.07 -51.93 -0.37 0.08 16 29 H 0.08 0.88 5.52 -51.93 -0.29 0.60 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.10 1.12 8.13 -51.93 -0.42 0.69 16 33 H 0.10 1.12 8.13 -51.93 -0.42 0.69 16 34 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.10 0.63 8.11 -51.93 -0.42 0.21 16 40 H 0.10 0.66 5.85 -51.93 -0.30 0.36 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.64 7.07 -51.93 -0.37 0.27 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -32.88 349.32 -7.91 -40.79 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.96 Total: -2.73 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.03 Total: -9.84 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.90 Total: -23.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.88 -7.91 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837739317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.506 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds