Wall clock time and date at job start Tue Mar 31 2020 06:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00127 * 2 1 4 4 C 1.52994 * 109.47118 * 124.99608 * 3 2 1 5 5 C 1.50705 * 110.05538 * 58.58720 * 4 3 2 6 6 O 1.20826 * 120.00204 * 121.41733 * 5 4 3 7 7 O 1.34231 * 119.99666 * 301.40920 * 5 4 3 8 8 C 1.45196 * 117.00091 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47451 * 180.02562 * 8 7 5 10 10 O 1.42903 * 109.46800 * 64.99755 * 9 8 7 11 11 C 1.42906 * 113.99349 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46651 * 179.97438 * 11 10 9 13 13 H 1.07991 * 119.99981 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99620 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00178 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99576 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46875 * 90.00718 * 16 14 12 18 18 H 1.48499 * 109.46681 * 210.00437 * 16 14 12 19 19 H 1.48495 * 109.47070 * 330.00310 * 16 14 12 20 20 C 1.54264 * 110.03090 * 179.97438 * 4 3 2 21 21 C 1.54897 * 104.19493 * 142.89700 * 20 4 3 22 22 C 1.54889 * 102.74591 * 322.05796 * 21 20 4 23 23 C 1.53873 * 110.03450 * 297.16925 * 4 3 2 24 24 H 1.08003 * 120.00393 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00160 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99340 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.46780 * 4.99388 * 3 2 1 28 28 H 1.09003 * 109.46827 * 244.99972 * 3 2 1 29 29 H 1.09003 * 109.47013 * 300.00168 * 8 7 5 30 30 H 1.08999 * 109.47298 * 59.99852 * 8 7 5 31 31 H 1.09000 * 109.47085 * 185.00114 * 9 8 7 32 32 H 1.09002 * 109.46883 * 305.00216 * 9 8 7 33 33 H 1.08999 * 109.47451 * 299.99898 * 11 10 9 34 34 H 1.08999 * 109.47357 * 60.00823 * 11 10 9 35 35 H 0.96998 * 119.99575 * 179.97438 * 15 14 12 36 36 H 1.08998 * 110.49036 * 24.22157 * 20 4 3 37 37 H 1.09000 * 110.49063 * 261.57197 * 20 4 3 38 38 H 1.09000 * 110.75568 * 80.37108 * 21 20 4 39 39 H 1.09002 * 110.75327 * 203.73969 * 21 20 4 40 40 H 1.08998 * 110.48466 * 156.62292 * 22 21 20 41 41 H 1.08999 * 110.48474 * 279.26336 * 22 21 20 42 42 H 1.08999 * 110.03697 * 121.43095 * 23 4 3 43 43 H 1.08994 * 110.03428 * 359.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1816 5 6 3.9945 0.1747 1.0894 6 8 5.1844 0.3784 1.0380 7 8 3.5273 -1.0835 1.0644 8 6 4.5090 -2.1496 0.9751 9 6 3.7934 -3.5018 0.9582 10 8 3.0082 -3.6103 -0.2309 11 6 2.2943 -4.8429 -0.3454 12 6 1.5043 -4.8484 -1.6288 13 1 1.5438 -3.9962 -2.2908 14 6 0.7320 -5.9421 -1.9582 15 7 0.6844 -6.9802 -1.1522 16 14 -0.2467 -5.9492 -3.5493 17 1 0.5848 -6.5202 -4.6392 18 1 -1.4689 -6.7744 -3.3749 19 1 -0.6338 -4.5588 -3.8985 20 6 3.8142 2.6644 1.1936 21 6 3.9524 3.0101 2.6972 22 6 2.5880 2.5622 3.2776 23 6 2.2554 1.2675 2.5066 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 5.0885 -2.0341 0.0592 30 1 5.1763 -2.1020 1.8356 31 1 4.5313 -4.3037 0.9808 32 1 3.1445 -3.5804 1.8305 33 1 3.0008 -5.6730 -0.3497 34 1 1.6143 -4.9489 0.4998 35 1 0.1407 -7.7494 -1.3838 36 1 3.2520 3.4402 0.6739 37 1 4.7969 2.5354 0.7400 38 1 4.7684 2.4466 3.1497 39 1 4.0981 4.0815 2.8353 40 1 2.6758 2.3587 4.3448 41 1 1.8278 3.3215 3.0944 42 1 2.5710 0.3978 3.0830 43 1 1.1849 1.2161 2.3079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838284780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:31 Heat of formation + Delta-G solvation = -135.189385 kcal Electronic energy + Delta-G solvation = -22958.041142 eV Core-core repulsion = 19582.218929 eV Total energy + Delta-G solvation = -3375.822212 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.92278 -38.30816 -36.91514 -36.01058 -34.37477 -32.77607 -30.58744 -29.79423 -28.84418 -26.94426 -25.30367 -23.54006 -22.37911 -21.70534 -20.93729 -19.55120 -19.42240 -17.37640 -16.63674 -16.51797 -16.28255 -15.55598 -15.24607 -14.91208 -14.54004 -14.40813 -14.24348 -13.65612 -13.50280 -13.16469 -12.92390 -12.70754 -12.24109 -11.97155 -11.71256 -11.54035 -11.34459 -11.31100 -11.10435 -11.02637 -10.90401 -10.85916 -10.77012 -10.69130 -10.50376 -10.26490 -10.12231 -10.00091 -9.14132 -9.02623 -8.88773 -8.22659 -6.12948 -4.14581 2.29402 2.64191 2.80908 3.29411 3.34584 3.40021 4.21609 4.31543 4.37737 4.56500 4.72955 4.95736 4.98592 5.10242 5.23175 5.23861 5.25779 5.27599 5.42086 5.46498 5.49662 5.51809 5.71163 5.74081 5.78192 5.82101 5.85517 5.87942 5.94672 5.98987 6.08819 6.12505 6.17179 6.39330 6.64922 7.04187 7.07511 7.17338 7.38487 7.77054 7.91429 8.11377 8.50867 8.98030 9.50329 10.98591 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.004042 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.027615 B = 6926.291488 C = 7585.816426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C -0.079 4.079 4 C -0.049 4.049 5 C 0.473 3.527 6 O -0.516 6.516 7 O -0.332 6.332 8 C 0.069 3.931 9 C 0.062 3.938 10 O -0.390 6.390 11 C 0.195 3.805 12 C -0.514 4.514 13 H 0.067 0.933 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.907 3.093 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.271 1.271 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.111 4.111 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.141 0.859 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.005 0.995 34 H 0.007 0.993 35 H 0.264 0.736 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 18.399 8.230 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.176 4.176 3 C -0.116 4.116 4 C -0.050 4.050 5 C 0.316 3.684 6 O -0.405 6.405 7 O -0.248 6.248 8 C -0.005 4.005 9 C -0.016 4.016 10 O -0.310 6.310 11 C 0.121 3.879 12 C -0.552 4.552 13 H 0.085 0.915 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.734 3.266 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.150 4.150 21 C -0.162 4.162 22 C -0.163 4.163 23 C -0.149 4.149 24 H 0.120 0.880 25 H 0.104 0.896 26 H 0.158 0.842 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.039 18.368 8.088 20.472 hybrid contribution -0.359 -0.612 -0.607 0.934 sum 3.679 17.757 7.480 19.616 Atomic orbital electron populations 1.23812 0.95915 1.01447 1.02000 1.23430 0.96470 0.98976 0.98691 1.20863 0.97122 0.97252 0.96396 1.21207 0.94181 0.91296 0.98359 1.23526 0.88625 0.84503 0.71754 1.90603 1.17879 1.85843 1.46138 1.86679 1.40457 1.15030 1.82587 1.23225 0.90219 0.84646 1.02403 1.22311 0.95242 0.93004 0.91002 1.87909 1.62953 1.41938 1.38212 1.20228 0.90239 0.80085 0.97354 1.21034 1.26659 1.02635 1.04863 0.91517 1.24935 0.96740 0.95076 0.97655 1.69960 1.40651 1.06195 1.36979 0.86353 0.79249 0.78245 0.82781 1.20468 1.21061 1.19561 1.22476 1.01080 0.93833 0.97612 1.22509 0.97531 1.00996 0.95213 1.22417 0.97291 0.97017 0.99557 1.22240 1.00804 0.98591 0.93224 0.88028 0.89554 0.84163 0.90174 0.90619 0.90581 0.90603 0.92082 0.93245 0.97696 0.97526 0.92642 0.90312 0.89601 0.91308 0.91227 0.91427 0.91277 0.91074 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.71 14.26 29.01 0.41 -2.29 16 2 C -0.16 -2.33 7.80 -36.03 -0.28 -2.61 16 3 C -0.08 -0.94 4.44 -27.89 -0.12 -1.06 16 4 C -0.05 -0.58 0.65 -154.55 -0.10 -0.68 16 5 C 0.47 7.13 6.29 36.01 0.23 7.35 16 6 O -0.52 -8.65 15.14 -18.75 -0.28 -8.93 16 7 O -0.33 -5.45 7.13 -42.03 -0.30 -5.75 16 8 C 0.07 1.09 5.84 37.16 0.22 1.31 16 9 C 0.06 1.13 6.33 37.16 0.24 1.36 16 10 O -0.39 -9.26 10.30 -38.80 -0.40 -9.66 16 11 C 0.20 5.27 5.69 36.01 0.20 5.48 16 12 C -0.51 -14.99 9.43 -34.44 -0.32 -15.31 16 13 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 16 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.11 -1.14 5.71 -25.07 -0.14 -1.28 16 21 C -0.12 -1.12 6.91 -24.73 -0.17 -1.29 16 22 C -0.13 -1.06 6.83 -25.04 -0.17 -1.23 16 23 C -0.11 -1.17 5.69 -25.59 -0.15 -1.32 16 24 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 25 H 0.09 0.98 7.84 -52.48 -0.41 0.57 16 26 H 0.14 2.54 5.64 -52.49 -0.30 2.25 16 27 H 0.08 0.77 7.79 -51.93 -0.40 0.37 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 30 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 34 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 0.65 7.85 -51.93 -0.41 0.24 16 37 H 0.09 1.00 6.84 -51.93 -0.36 0.64 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.82 7.66 -51.93 -0.40 0.42 16 43 H 0.08 0.86 7.17 -51.93 -0.37 0.49 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -31.63 352.56 -7.48 -39.10 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.26 Total: -0.84 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -0.26 Total: -10.03 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.74 Total: -25.94 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.98 Total: -24.34 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.63 -7.48 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838284780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.086 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds