Wall clock time and date at job start Tue Mar 31 2020 06:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.62865 * 2 1 4 4 C 1.53005 * 109.63455 * 120.38970 * 2 1 3 5 5 C 1.50091 * 110.13653 * 169.46641 * 4 2 1 6 6 C 1.31651 * 123.77998 * 342.83527 * 5 4 2 7 7 C 1.46955 * 118.10885 * 180.43828 * 6 5 4 8 8 O 1.21532 * 120.00221 * 0.02562 * 7 6 5 9 9 O 1.34795 * 119.99596 * 180.02562 * 7 6 5 10 10 C 1.45197 * 116.99776 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47394 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.46685 * 64.99580 * 11 10 9 13 13 C 1.42903 * 113.99957 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47280 * 180.02562 * 13 12 11 15 15 H 1.08010 * 120.00126 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00328 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99684 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00389 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46731 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47212 * 119.99911 * 18 16 14 21 21 H 1.48502 * 109.46993 * 239.99895 * 18 16 14 22 22 C 1.50092 * 123.77598 * 0.41563 * 6 5 4 23 23 C 1.53002 * 110.13572 * 342.82742 * 22 6 5 24 24 H 1.09002 * 109.47153 * 299.60726 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.60917 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.60898 * 1 2 3 27 27 H 1.08996 * 109.47000 * 59.99935 * 3 2 1 28 28 H 1.08998 * 109.47149 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47195 * 300.00319 * 3 2 1 30 30 H 1.09000 * 109.36174 * 289.67703 * 4 2 1 31 31 H 1.09005 * 109.35375 * 49.40171 * 4 2 1 32 32 H 1.08002 * 118.10982 * 162.84921 * 5 4 2 33 33 H 1.09005 * 109.47289 * 299.99900 * 10 9 7 34 34 H 1.09002 * 109.47545 * 60.00130 * 10 9 7 35 35 H 1.08998 * 109.47333 * 184.99524 * 11 10 9 36 36 H 1.08998 * 109.47296 * 305.00176 * 11 10 9 37 37 H 1.08999 * 109.47637 * 300.00635 * 13 12 11 38 38 H 1.09005 * 109.46413 * 60.00451 * 13 12 11 39 39 H 0.97004 * 119.99967 * 179.97438 * 17 16 14 40 40 H 1.09007 * 109.35904 * 103.03402 * 22 6 5 41 41 H 1.09002 * 109.35981 * 222.76210 * 22 6 5 42 42 H 1.08996 * 109.63337 * 290.05879 * 23 22 6 43 43 H 1.09006 * 109.62831 * 169.46733 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 2.0441 -0.7290 1.2431 5 6 3.5226 -0.9619 1.1310 6 6 4.1915 -0.8883 -0.0005 7 6 5.6372 -1.1497 0.0315 8 8 6.1819 -1.4250 1.0826 9 8 6.3593 -1.0842 -1.1048 10 6 7.7819 -1.3547 -0.9984 11 6 8.4287 -1.2347 -2.3798 12 8 8.3337 0.1168 -2.8343 13 6 8.9116 0.3387 -4.1223 14 6 8.7562 1.7895 -4.4994 15 1 8.2656 2.4737 -3.8229 16 6 9.2403 2.2434 -5.7079 17 7 9.8373 1.4101 -6.5318 18 14 9.0483 4.0418 -6.1750 19 1 8.3462 4.7643 -5.0840 20 1 10.3891 4.6444 -6.3856 21 1 8.2566 4.1463 -7.4270 22 6 3.5624 -0.5533 -1.3215 23 6 2.0452 -0.7351 -1.2435 24 1 -0.3633 0.5077 0.8935 25 1 -0.3633 -1.0277 -0.0070 26 1 -0.3634 0.5199 -0.8865 27 1 1.6820 1.9559 0.8899 28 1 3.1339 1.4382 -0.0005 29 1 1.6820 1.9560 -0.8900 30 1 1.8394 -0.1248 2.1269 31 1 1.5351 -1.6885 1.3355 32 1 4.0692 -1.2041 2.0304 33 1 8.2388 -0.6350 -0.3191 34 1 7.9321 -2.3635 -0.6137 35 1 9.4777 -1.5238 -2.3162 36 1 7.9128 -1.8908 -3.0808 37 1 9.9707 0.0823 -4.0946 38 1 8.4060 -0.2849 -4.8597 39 1 10.1776 1.7293 -7.3823 40 1 3.7897 0.4815 -1.5778 41 1 3.9643 -1.2128 -2.0907 42 1 1.8070 -1.7959 -1.1667 43 1 1.5799 -0.3159 -2.1357 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838342068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:41 Heat of formation + Delta-G solvation = -145.689487 kcal Electronic energy + Delta-G solvation = -22185.232540 eV Core-core repulsion = 18808.955009 eV Total energy + Delta-G solvation = -3376.277531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.58844 -39.23383 -37.03993 -35.97659 -33.63719 -32.76083 -31.09200 -30.08040 -27.62585 -27.45721 -26.84124 -23.54341 -23.08382 -22.35128 -21.62138 -20.01056 -18.04067 -17.06378 -16.69802 -16.43899 -16.31411 -15.36844 -15.09585 -14.66687 -14.60837 -14.33403 -14.15888 -13.99948 -13.53606 -13.18298 -12.81578 -12.74584 -12.40728 -12.30688 -12.07939 -11.94740 -11.89821 -11.65271 -11.41529 -10.92598 -10.87700 -10.82597 -10.72914 -10.68852 -10.38893 -10.33721 -10.20162 -10.02664 -9.23199 -9.11085 -8.87596 -8.21033 -6.12002 -4.13483 1.14749 2.86177 3.00661 3.28958 3.35401 3.42157 4.32071 4.32966 4.43398 4.53729 4.73780 4.82210 4.93259 5.02036 5.13417 5.24376 5.24746 5.26670 5.36319 5.40547 5.48102 5.48460 5.55327 5.69849 5.71045 5.73455 5.88212 5.90690 5.91195 5.93845 6.01966 6.04012 6.11862 6.23068 6.30537 6.50714 6.63360 7.05934 7.40137 7.78547 7.90138 8.12858 8.53051 8.99614 9.51371 10.99646 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.003616 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.081042 B = 7740.995040 C = 8946.289628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.070 4.070 3 C -0.147 4.147 4 C -0.084 4.084 5 C -0.069 4.069 6 C -0.144 4.144 7 C 0.495 3.505 8 O -0.523 6.523 9 O -0.334 6.334 10 C 0.074 3.926 11 C 0.062 3.938 12 O -0.390 6.390 13 C 0.194 3.806 14 C -0.514 4.514 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.081 4.081 23 C -0.109 4.109 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.263 0.737 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.252 -6.276 13.584 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.204 4.204 4 C -0.120 4.120 5 C -0.088 4.088 6 C -0.145 4.145 7 C 0.342 3.658 8 O -0.415 6.415 9 O -0.249 6.249 10 C 0.000 4.000 11 C -0.015 4.015 12 O -0.310 6.310 13 C 0.120 3.880 14 C -0.552 4.552 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.118 4.118 23 C -0.146 4.146 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.039 -6.211 13.783 22.779 hybrid contribution 0.461 0.564 -0.428 0.845 sum -16.578 -5.647 13.356 22.025 Atomic orbital electron populations 1.21851 0.94189 1.01743 1.01959 1.20660 0.95430 0.95900 0.94975 1.21969 1.02029 0.94685 1.01767 1.20688 0.91517 1.01151 0.98689 1.22933 0.96386 0.92186 0.97270 1.20153 0.89540 1.07189 0.97606 1.21598 0.88920 0.73465 0.81853 1.90807 1.72919 1.45789 1.31987 1.86694 1.22812 1.80615 1.34808 1.23209 0.76762 1.01121 0.98882 1.22316 0.98114 0.88145 0.92972 1.87922 1.81464 1.23215 1.38424 1.20239 0.92217 0.97303 0.78252 1.21091 1.37769 0.93567 1.02760 0.91458 1.24949 0.95032 0.98628 0.95900 1.69972 1.38911 1.34884 1.10047 0.86281 0.77870 0.83928 0.78436 1.19454 1.20835 1.20804 1.20395 0.94496 1.03435 0.93486 1.21703 0.95006 1.00353 0.97535 0.92627 0.92636 0.92338 0.92800 0.91772 0.92297 0.89908 0.89610 0.85846 0.90546 0.90512 0.91980 0.93208 0.97640 0.97498 0.92694 0.89485 0.89754 0.91637 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.48 37.16 0.32 -0.59 16 2 C -0.07 -0.56 0.78 -154.31 -0.12 -0.68 16 3 C -0.15 -1.31 7.81 37.16 0.29 -1.02 16 4 C -0.08 -0.65 4.87 -28.17 -0.14 -0.79 16 5 C -0.07 -0.73 9.01 -36.47 -0.33 -1.06 16 6 C -0.14 -1.83 5.12 -103.26 -0.53 -2.36 16 7 C 0.50 7.95 7.84 34.26 0.27 8.22 16 8 O -0.52 -9.24 15.75 -19.29 -0.30 -9.54 16 9 O -0.33 -5.85 9.51 -43.54 -0.41 -6.26 16 10 C 0.07 1.23 5.86 37.16 0.22 1.44 16 11 C 0.06 1.16 6.33 37.16 0.24 1.40 16 12 O -0.39 -9.59 10.30 -38.80 -0.40 -9.99 16 13 C 0.19 5.35 5.69 36.00 0.20 5.55 16 14 C -0.51 -15.24 9.43 -34.44 -0.32 -15.56 16 15 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 18 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.08 -0.95 4.81 -28.18 -0.14 -1.08 16 23 C -0.11 -0.97 4.94 -26.54 -0.13 -1.10 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.68 5.69 -51.93 -0.30 0.38 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 31 H 0.09 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.12 1.36 7.17 -52.49 -0.38 0.99 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.09 1.09 6.92 -51.93 -0.36 0.73 16 41 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 42 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -32.81 351.99 -7.69 -40.51 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -7.32 Total: -4.62 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -0.27 Total: -6.10 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -1.12 Total: -25.79 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.81 -7.69 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838342068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.183 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds