Wall clock time and date at job start Tue Mar 31 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 110.39107 * 2 1 4 4 C 1.54891 * 110.44235 * 237.43938 * 2 1 3 5 5 C 1.54981 * 102.33546 * 203.63526 * 4 2 1 6 6 C 1.54285 * 103.74899 * 37.08315 * 5 4 2 7 7 H 1.09004 * 110.01604 * 96.24458 * 6 5 4 8 8 O 1.45197 * 109.98359 * 217.52917 * 6 5 4 9 9 C 1.34236 * 116.99873 * 208.86812 * 8 6 5 10 10 O 1.20823 * 119.99905 * 0.02562 * 9 8 6 11 11 C 1.50702 * 120.00010 * 179.97438 * 9 8 6 12 12 C 1.53003 * 109.46878 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.46838 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47119 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.51450 * 106.85069 * 336.88076 * 6 5 4 24 24 O 1.20763 * 126.33976 * 179.62089 * 23 6 5 25 25 H 1.09000 * 109.47291 * 299.01981 * 1 2 3 26 26 H 1.08992 * 109.47190 * 59.03224 * 1 2 3 27 27 H 1.09009 * 109.46634 * 179.02447 * 1 2 3 28 28 H 1.09006 * 109.46656 * 180.97411 * 3 2 1 29 29 H 1.08996 * 109.47248 * 300.97377 * 3 2 1 30 30 H 1.08994 * 109.46856 * 60.97779 * 3 2 1 31 31 H 1.08999 * 110.83274 * 321.84929 * 4 2 1 32 32 H 1.09005 * 110.83203 * 85.22375 * 4 2 1 33 33 H 1.09003 * 110.56890 * 278.52540 * 5 4 2 34 34 H 1.08993 * 110.57070 * 155.65126 * 5 4 2 35 35 H 1.08998 * 109.46799 * 60.00757 * 11 9 8 36 36 H 1.08994 * 109.46990 * 300.00480 * 11 9 8 37 37 H 1.08998 * 109.46943 * 60.00655 * 12 11 9 38 38 H 1.08994 * 109.47116 * 300.00266 * 12 11 9 39 39 H 1.09004 * 109.46806 * 60.00265 * 13 12 11 40 40 H 1.09000 * 109.47828 * 300.00570 * 13 12 11 41 41 H 1.09004 * 109.47066 * 60.00422 * 14 13 12 42 42 H 1.08994 * 109.47405 * 300.00252 * 14 13 12 43 43 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0710 -0.7811 -1.2232 5 6 3.4863 -1.1989 -0.7497 6 6 3.2931 -1.5170 0.7476 7 1 3.1462 -2.5882 0.8855 8 8 4.4515 -1.0738 1.5025 9 6 4.7420 -1.7496 2.6254 10 8 4.0514 -2.6808 2.9658 11 6 5.9301 -1.3475 3.4608 12 6 6.0364 -2.2726 4.6748 13 6 7.2429 -1.8648 5.5225 14 6 7.3497 -2.7903 6.7362 15 6 8.5378 -2.3882 7.5716 16 1 9.1548 -1.5556 7.2675 17 6 8.8334 -3.0794 8.7274 18 7 9.8671 -2.7251 9.4593 19 14 7.7659 -4.5191 9.2537 20 1 8.2991 -5.7727 8.6628 21 1 7.7752 -4.6268 10.7348 22 1 6.3746 -4.3021 8.7820 23 6 2.0603 -0.7630 1.2009 24 8 1.5867 -0.7679 2.3118 25 1 -0.3634 0.4985 0.8986 26 1 -0.3633 0.5287 -0.8811 27 1 -0.3633 -1.0276 -0.0175 28 1 3.1529 1.4166 -0.0175 29 1 1.6940 1.9590 -0.8811 30 1 1.7224 1.9483 0.8986 31 1 1.4557 -1.6576 -1.4265 32 1 2.1269 -0.1369 -2.1008 33 1 4.1913 -0.3777 -0.8788 34 1 3.8247 -2.0838 -1.2886 35 1 5.8058 -0.3184 3.7976 36 1 6.8381 -1.4271 2.8631 37 1 6.1609 -3.3016 4.3376 38 1 5.1284 -2.1934 5.2725 39 1 7.1189 -0.8357 5.8597 40 1 8.1508 -1.9443 4.9245 41 1 7.4739 -3.8193 6.3987 42 1 6.4420 -2.7112 7.3344 43 1 10.0752 -3.2116 10.2722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840574863.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:07 Heat of formation + Delta-G solvation = -155.509408 kcal Electronic energy + Delta-G solvation = -21963.927023 eV Core-core repulsion = 18587.223668 eV Total energy + Delta-G solvation = -3376.703355 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.29740 -39.84846 -37.30663 -36.52779 -35.11143 -32.69860 -32.29814 -30.31836 -27.86184 -27.54952 -26.07022 -24.75030 -22.73689 -21.25661 -20.64456 -20.08177 -19.02317 -17.84353 -17.09355 -16.63244 -16.50655 -15.94172 -15.71198 -14.84597 -14.68953 -14.24011 -14.06342 -13.95295 -13.63589 -13.16140 -12.87448 -12.77126 -12.61850 -12.58717 -12.57685 -12.31076 -12.11307 -11.78372 -11.69519 -11.59706 -11.18384 -11.16080 -11.13248 -10.79848 -10.58742 -10.50477 -9.87323 -9.67570 -9.55128 -9.52351 -9.13363 -8.49541 -6.00655 -3.98274 1.31733 2.18582 2.61445 3.35237 3.42423 3.46241 3.48386 3.86580 4.03666 4.30483 4.49961 4.53467 4.54336 4.65666 4.85135 4.86400 5.03159 5.15312 5.18699 5.18895 5.25114 5.29964 5.34061 5.35080 5.41767 5.50111 5.54298 5.65975 5.69394 5.79496 5.95005 6.04566 6.26398 6.34171 6.61729 6.75852 6.95768 7.02228 7.35896 7.48740 7.69261 7.84170 8.57819 9.04282 9.62539 11.12808 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038158 B = 0.002665 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.608756 B =10504.650011 C =10671.408130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C -0.132 4.132 4 C -0.111 4.111 5 C -0.115 4.115 6 C 0.026 3.974 7 H 0.112 0.888 8 O -0.341 6.341 9 C 0.456 3.544 10 O -0.495 6.495 11 C -0.109 4.109 12 C -0.112 4.112 13 C -0.102 4.102 14 C -0.015 4.015 15 C -0.520 4.520 16 H 0.071 0.929 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.361 3.639 24 O -0.410 6.410 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.016 0.984 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.976 6.646 -26.731 32.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C -0.189 4.189 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.030 4.030 7 H 0.130 0.870 8 O -0.259 6.259 9 C 0.298 3.702 10 O -0.381 6.381 11 C -0.147 4.147 12 C -0.150 4.150 13 C -0.139 4.139 14 C -0.053 4.053 15 C -0.558 4.558 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 C 0.232 3.768 24 O -0.278 6.278 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.376 6.306 -25.857 31.784 hybrid contribution -0.512 -0.960 0.386 1.155 sum -17.888 5.346 -25.470 31.580 Atomic orbital electron populations 1.21744 0.92170 1.02572 1.02936 1.21968 0.97776 0.97392 0.95200 1.21689 1.01857 0.92351 1.03026 1.22558 0.95188 1.00271 0.96802 1.22413 0.98471 1.03701 0.90605 1.24001 0.84595 1.01810 0.92637 0.87030 1.86693 1.44671 1.57858 1.36674 1.24357 0.86327 0.80185 0.79288 1.90678 1.50122 1.28198 1.69059 1.21594 0.93494 1.03268 0.96321 1.21620 1.00815 0.98450 0.94070 1.21471 0.95108 1.00363 0.96993 1.19578 0.97435 0.94840 0.93426 1.21171 1.11015 1.16799 1.06791 0.91038 1.25042 0.94987 0.97275 0.96294 1.69918 1.27741 1.41261 1.15535 0.86777 0.81891 0.83118 0.77529 1.20313 1.21434 1.18910 1.25281 0.84573 0.78303 0.88681 1.90458 1.59635 1.54356 1.23389 0.91664 0.91384 0.92265 0.91400 0.90982 0.91883 0.90188 0.89180 0.88803 0.89351 0.87677 0.87565 0.91498 0.91461 0.92548 0.92559 0.97007 0.96560 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.46 37.16 0.31 -0.57 16 2 C -0.12 -0.86 0.87 -154.10 -0.13 -1.00 16 3 C -0.13 -0.81 8.54 37.16 0.32 -0.49 16 4 C -0.11 -0.51 5.85 -24.69 -0.14 -0.66 16 5 C -0.11 -0.68 6.25 -25.01 -0.16 -0.83 16 6 C 0.03 0.26 3.15 -26.84 -0.08 0.18 16 7 H 0.11 1.24 7.18 -51.93 -0.37 0.87 16 8 O -0.34 -4.15 9.89 -39.38 -0.39 -4.54 16 9 C 0.46 6.62 7.95 36.01 0.29 6.90 16 10 O -0.49 -8.76 15.21 -18.75 -0.29 -9.04 16 11 C -0.11 -1.44 5.81 -27.88 -0.16 -1.61 16 12 C -0.11 -1.88 4.50 -26.73 -0.12 -2.00 16 13 C -0.10 -1.99 5.15 -26.74 -0.14 -2.13 16 14 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 15 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 16 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 17 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 19 Si 0.88 22.44 27.47 -169.99 -4.67 17.77 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 23 C 0.36 4.05 6.34 -28.10 -0.18 3.87 16 24 O -0.41 -6.31 17.78 6.00 0.11 -6.20 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.07 0.41 7.40 -51.93 -0.38 0.03 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.32 8.06 -51.93 -0.42 -0.10 16 32 H 0.09 0.26 8.05 -51.93 -0.42 -0.16 16 33 H 0.09 0.51 7.63 -51.93 -0.40 0.11 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 38 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.01 0.28 7.58 -51.93 -0.39 -0.11 16 42 H 0.02 0.40 7.19 -51.93 -0.37 0.03 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -35.11 354.10 -7.28 -42.39 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -7.41 Total: -5.58 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -0.74 Total: -12.46 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.77 Total: -27.68 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.57 Total: -19.79 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.11 -7.28 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840574863.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.117 kcal (2) G-P(sol) polarization free energy of solvation -35.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds