Wall clock time and date at job start Tue Mar 31 2020 06:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.97198 * 2 1 4 4 C 1.54279 * 109.98329 * 121.27198 * 2 1 3 5 5 C 1.54978 * 103.75127 * 96.22675 * 4 2 1 6 6 C 1.54897 * 102.33522 * 37.08185 * 5 4 2 7 7 H 1.09000 * 110.44117 * 203.51431 * 6 5 4 8 8 O 1.45203 * 110.43977 * 81.11335 * 6 5 4 9 9 C 1.34226 * 116.99798 * 150.00415 * 8 6 5 10 10 O 1.20824 * 119.99959 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99900 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.46912 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47060 * 179.97438 * 12 11 9 14 14 C 1.52992 * 109.47482 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47114 * 60.00582 * 19 17 15 21 21 H 1.48503 * 109.47134 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47402 * 300.00322 * 19 17 15 23 23 C 1.51449 * 109.98444 * 238.68760 * 2 1 3 24 24 O 1.20766 * 126.33964 * 60.33072 * 23 2 1 25 25 H 1.08999 * 109.47026 * 298.72887 * 1 2 3 26 26 H 1.09003 * 109.47146 * 58.72884 * 1 2 3 27 27 H 1.09002 * 109.46581 * 178.72920 * 1 2 3 28 28 H 1.08991 * 109.47619 * 181.27089 * 3 2 1 29 29 H 1.09002 * 109.47009 * 301.27276 * 3 2 1 30 30 H 1.09008 * 109.47132 * 61.26616 * 3 2 1 31 31 H 1.08997 * 110.57212 * 337.65486 * 4 2 1 32 32 H 1.09004 * 110.69047 * 214.85412 * 4 2 1 33 33 H 1.09001 * 110.83570 * 278.87255 * 5 4 2 34 34 H 1.09001 * 110.83428 * 155.29239 * 5 4 2 35 35 H 1.09001 * 109.46980 * 59.99650 * 11 9 8 36 36 H 1.08992 * 109.47158 * 299.99756 * 11 9 8 37 37 H 1.09002 * 109.47398 * 300.00078 * 12 11 9 38 38 H 1.09001 * 109.47194 * 60.00258 * 12 11 9 39 39 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 40 40 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 41 41 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 42 42 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 43 43 H 0.96996 * 119.99885 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0526 1.4380 0.0000 4 6 2.0573 -0.7526 1.2392 5 6 2.3366 -2.1825 0.7106 6 6 2.8772 -1.9085 -0.7149 7 1 2.7321 -2.7814 -1.3513 8 8 4.2828 -1.5477 -0.6635 9 6 5.0346 -1.8731 -1.7268 10 8 4.5349 -2.4409 -2.6690 11 6 6.5022 -1.5311 -1.7449 12 6 7.1209 -2.0087 -3.0603 13 6 8.6107 -1.6609 -3.0789 14 6 9.2293 -2.1379 -4.3944 15 6 10.6966 -1.7948 -4.4132 16 1 11.1434 -1.2877 -3.5707 17 6 11.4690 -2.1292 -5.5052 18 7 10.9251 -2.7472 -6.5309 19 14 13.2877 -1.7033 -5.5286 20 1 13.9674 -2.3722 -4.3903 21 1 13.8881 -2.1664 -6.8055 22 1 13.4532 -0.2325 -5.4090 23 6 2.0477 -0.7397 -1.2160 24 8 1.8397 -0.4526 -2.3704 25 1 -0.3633 0.4940 0.9012 26 1 -0.3633 0.5335 -0.8784 27 1 -0.3632 -1.0275 -0.0228 28 1 3.1423 1.4286 -0.0228 29 1 1.6753 1.9617 -0.8784 30 1 1.7124 1.9482 0.9012 31 1 1.3012 -0.7753 2.0240 32 1 2.9753 -0.2940 1.6067 33 1 1.4178 -2.7675 0.6710 34 1 3.0891 -2.6814 1.3213 35 1 7.0003 -2.0234 -0.9096 36 1 6.6249 -0.4518 -1.6561 37 1 6.9982 -3.0881 -3.1487 38 1 6.6229 -1.5167 -3.8958 39 1 8.7330 -0.5814 -2.9907 40 1 9.1091 -2.1525 -2.2435 41 1 9.1070 -3.2173 -4.4832 42 1 8.7309 -1.6459 -5.2297 43 1 11.4684 -2.9822 -7.2993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840574864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:11 Heat of formation + Delta-G solvation = -157.601343 kcal Electronic energy + Delta-G solvation = -21952.538072 eV Core-core repulsion = 18575.744004 eV Total energy + Delta-G solvation = -3376.794068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24972 -39.82654 -37.30989 -36.37034 -34.99278 -32.74603 -32.32206 -29.94182 -27.80365 -27.43469 -25.82957 -24.54056 -23.02425 -21.33278 -20.67513 -20.03977 -18.97040 -17.81115 -17.03146 -16.36976 -16.17736 -15.91053 -15.26774 -15.17120 -14.48818 -14.40362 -14.19577 -14.04730 -13.42092 -13.37048 -12.85637 -12.67660 -12.65686 -12.58764 -12.42983 -11.87273 -11.78908 -11.67800 -11.59808 -11.39011 -11.20888 -11.04229 -10.99853 -10.59959 -10.59544 -10.46721 -10.40916 -9.65221 -9.54359 -9.28846 -9.03023 -8.30936 -5.95756 -3.98562 1.28784 2.20939 2.67589 3.35433 3.39842 3.42031 3.52468 3.91457 4.11753 4.37226 4.48548 4.58157 4.63013 4.74480 4.85326 4.94868 5.13124 5.18987 5.24130 5.25955 5.30884 5.32632 5.39575 5.44446 5.45333 5.58791 5.63241 5.70044 5.75384 5.84084 6.04325 6.16786 6.29223 6.45985 6.75962 6.94089 7.04025 7.15961 7.71915 7.73003 7.87359 8.04894 8.46327 9.08798 9.65165 11.15581 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039535 B = 0.002532 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.059937 B =11056.934305 C =11091.355502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 C -0.135 4.135 4 C -0.110 4.110 5 C -0.117 4.117 6 C 0.024 3.976 7 H 0.108 0.892 8 O -0.336 6.336 9 C 0.453 3.547 10 O -0.492 6.492 11 C -0.108 4.108 12 C -0.110 4.110 13 C -0.109 4.109 14 C 0.020 3.980 15 C -0.522 4.522 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.364 3.636 24 O -0.410 6.410 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.375 4.578 19.786 29.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.123 4.123 3 C -0.192 4.192 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.032 4.032 7 H 0.126 0.874 8 O -0.254 6.254 9 C 0.296 3.704 10 O -0.378 6.378 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.235 3.765 24 O -0.278 6.278 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.634 4.486 18.674 28.929 hybrid contribution 0.919 0.057 -0.189 0.940 sum -20.715 4.544 18.485 28.133 Atomic orbital electron populations 1.21787 0.91861 1.02504 1.03049 1.21759 0.97787 0.97593 0.95178 1.21766 1.01690 0.92890 1.02880 1.22471 1.02157 0.94260 0.95855 1.22605 1.01718 0.98082 0.93041 1.24059 0.79688 0.99073 1.00369 0.87395 1.86656 1.19720 1.75155 1.43893 1.24457 0.90696 0.75506 0.79779 1.90699 1.73852 1.38029 1.35186 1.21626 0.85633 1.04387 1.02948 1.21601 0.97437 1.01904 0.93782 1.21644 0.91550 1.00184 1.01311 1.19093 0.94990 0.96598 0.91029 1.21231 0.94371 1.37903 1.02482 0.92741 1.25044 0.98543 0.95280 0.95693 1.69964 1.36032 1.40776 1.06704 0.86657 0.85366 0.78762 0.77188 1.20258 1.21320 1.20266 1.25301 0.77686 0.83991 0.89539 1.90451 1.50584 1.65016 1.21740 0.91174 0.91809 0.92182 0.91742 0.91931 0.91163 0.90028 0.89767 0.88884 0.88785 0.87658 0.87812 0.91454 0.91484 0.93188 0.93161 0.96538 0.96534 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 8.39 37.16 0.31 -0.52 16 2 C -0.12 -0.94 0.91 -154.62 -0.14 -1.08 16 3 C -0.13 -1.00 8.40 37.16 0.31 -0.69 16 4 C -0.11 -0.62 5.92 -25.02 -0.15 -0.77 16 5 C -0.12 -0.74 6.67 -24.69 -0.16 -0.91 16 6 C 0.02 0.26 3.16 -26.32 -0.08 0.18 16 7 H 0.11 1.29 7.14 -51.93 -0.37 0.92 16 8 O -0.34 -4.10 9.95 -39.25 -0.39 -4.49 16 9 C 0.45 6.68 7.96 36.01 0.29 6.96 16 10 O -0.49 -8.98 15.19 -18.75 -0.28 -9.27 16 11 C -0.11 -1.46 5.81 -27.88 -0.16 -1.62 16 12 C -0.11 -1.93 4.50 -26.73 -0.12 -2.05 16 13 C -0.11 -2.22 5.15 -26.74 -0.14 -2.36 16 14 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 15 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 16 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.36 4.21 6.17 -28.11 -0.17 4.04 16 24 O -0.41 -6.35 17.99 5.99 0.11 -6.24 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 31 H 0.08 0.30 7.84 -51.93 -0.41 -0.10 16 32 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -34.45 358.92 -7.70 -42.15 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -7.49 Total: -5.39 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.77 Total: -12.21 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.74 Total: -26.85 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.57 Total: -20.00 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.45 -7.70 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840574864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.455 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds