Wall clock time and date at job start Tue Mar 31 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 112.84480 * 2 1 4 4 C 1.34770 * 120.00266 * 64.93143 * 3 2 1 5 5 S 1.71199 * 119.99968 * 5.11479 * 4 3 2 6 6 N 1.34781 * 120.00053 * 185.11196 * 4 3 2 7 7 C 1.46924 * 120.63050 * 354.61160 * 6 4 3 8 8 C 1.53619 * 108.54409 * 126.36779 * 7 6 4 9 9 C 1.53041 * 109.24260 * 54.85373 * 8 7 6 10 10 C 1.50700 * 109.44744 * 178.50065 * 9 8 7 11 11 H 1.07996 * 120.00590 * 120.06624 * 10 9 8 12 12 C 1.37886 * 119.99992 * 300.06075 * 10 9 8 13 13 N 1.31515 * 119.99662 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 119.99991 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47512 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47130 * 120.00271 * 14 12 10 17 17 H 1.48501 * 109.47095 * 239.99856 * 14 12 10 18 18 C 1.53035 * 109.53879 * 298.51092 * 9 8 7 19 19 C 1.46928 * 120.63033 * 174.88644 * 6 4 3 20 20 C 1.53775 * 113.61411 * 228.69643 * 2 1 3 21 21 C 1.53786 * 87.07867 * 220.01719 * 20 2 1 22 22 C 1.53775 * 113.61495 * 131.19479 * 2 1 3 23 23 H 1.09001 * 109.46941 * 283.73740 * 1 2 3 24 24 H 1.09003 * 109.46706 * 163.74066 * 1 2 3 25 25 H 1.09002 * 109.47303 * 43.74252 * 1 2 3 26 26 H 0.97004 * 119.99444 * 244.93481 * 3 2 1 27 27 H 1.09004 * 109.58633 * 246.20220 * 7 6 4 28 28 H 1.09002 * 109.58461 * 6.61984 * 7 6 4 29 29 H 1.09003 * 109.63230 * 294.86293 * 8 7 6 30 30 H 1.08999 * 109.43108 * 174.72498 * 8 7 6 31 31 H 1.09001 * 109.45662 * 58.53136 * 9 8 7 32 32 H 0.97001 * 119.99731 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.49890 * 301.41703 * 18 9 8 34 34 H 1.09000 * 109.50032 * 181.31425 * 18 9 8 35 35 H 1.09004 * 109.58555 * 353.38029 * 19 6 4 36 36 H 1.09001 * 109.58377 * 113.65878 * 19 6 4 37 37 H 1.09006 * 113.61804 * 334.55960 * 20 2 1 38 38 H 1.08998 * 113.62250 * 105.46981 * 20 2 1 39 39 H 1.09006 * 113.61140 * 270.88238 * 21 20 2 40 40 H 1.09003 * 113.69185 * 139.99212 * 21 20 2 41 41 H 1.09007 * 113.61380 * 254.53233 * 22 2 1 42 42 H 1.08996 * 113.61740 * 25.43032 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0988 1.3501 0.0000 4 6 1.9047 2.1631 1.0572 5 16 1.1069 1.5760 2.4535 6 7 2.3387 3.4385 1.0152 7 6 3.1274 3.9236 -0.1256 8 6 2.4511 5.1837 -0.6865 9 6 2.2786 6.2068 0.4385 10 6 1.6489 7.4593 -0.1145 11 1 0.7014 7.8037 0.2726 12 6 2.2826 8.1657 -1.1149 13 7 3.4367 7.7467 -1.5860 14 14 1.5024 9.7186 -1.7999 15 1 0.2148 9.9735 -1.1054 16 1 2.4174 10.8684 -1.5852 17 1 1.2546 9.5480 -3.2541 18 6 1.3778 5.6219 1.5286 19 6 2.0372 4.3683 2.1121 20 6 2.1460 -0.9300 -1.0585 21 6 3.1923 -1.3135 0.0013 22 6 2.1460 -0.9280 1.0602 23 1 -0.3633 0.2440 0.9983 24 1 -0.3633 -0.9866 -0.2877 25 1 -0.3634 0.7424 -0.7105 26 1 2.6151 1.6588 -0.7610 27 1 4.1379 4.1642 0.2048 28 1 3.1663 3.1540 -0.8965 29 1 1.4744 4.9241 -1.0951 30 1 3.0736 5.6096 -1.4734 31 1 3.2533 6.4473 0.8631 32 1 3.8823 8.2434 -2.2900 33 1 0.4113 5.3582 1.0992 34 1 1.2365 6.3597 2.3185 35 1 1.3566 3.8923 2.8180 36 1 2.9603 4.6425 2.6228 37 1 1.4945 -1.7549 -1.3473 38 1 2.5650 -0.4007 -1.9142 39 1 4.0711 -0.6685 0.0006 40 1 3.4455 -2.3737 0.0033 41 1 2.5650 -0.3969 1.9150 42 1 1.4946 -1.7521 1.3507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840741940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:35 Heat of formation + Delta-G solvation = 33.578318 kcal Electronic energy + Delta-G solvation = -20912.477485 eV Core-core repulsion = 18019.019211 eV Total energy + Delta-G solvation = -2893.458273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37066 -38.80178 -35.41374 -33.29333 -31.25177 -30.61099 -29.34242 -26.74829 -25.90105 -24.08562 -23.13735 -22.48050 -21.37302 -19.68425 -19.15047 -17.90003 -16.60932 -16.38573 -15.45953 -15.16918 -14.63767 -14.45448 -14.21970 -13.68000 -13.51619 -13.28720 -12.98161 -12.78797 -12.71138 -12.30078 -11.96436 -11.74442 -11.44187 -11.24527 -11.05342 -10.98265 -10.81627 -10.75040 -10.55651 -10.34319 -10.27399 -10.23877 -9.77459 -9.32100 -9.11371 -8.54274 -8.42385 -7.29880 -6.88932 -6.16108 -4.22109 1.77623 2.27045 2.90064 3.19997 3.29119 3.33443 3.46965 4.29245 4.31631 4.47980 4.78834 4.81981 5.06921 5.17526 5.36141 5.46926 5.56734 5.60042 5.63714 5.66397 5.72377 5.80774 5.85194 5.92744 5.96188 6.08823 6.17496 6.31167 6.34584 6.44091 6.49626 6.61111 6.69053 6.83446 6.91168 7.08088 7.19544 7.50827 7.58097 7.73620 7.87790 8.25461 8.81813 9.44144 10.89734 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.004335 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.504281 B = 6456.779562 C = 6870.335989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 N -0.676 5.676 4 C 0.573 3.427 5 S -0.679 6.679 6 N -0.549 5.549 7 C 0.091 3.909 8 C -0.121 4.121 9 C 0.047 3.953 10 C -0.511 4.511 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.122 4.122 19 C 0.101 3.899 20 C -0.138 4.138 21 C -0.148 4.148 22 C -0.128 4.128 23 H 0.096 0.904 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.396 0.604 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -14.657 -0.531 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.074 3.926 3 N -0.310 5.310 4 C 0.212 3.788 5 S -0.550 6.550 6 N -0.254 5.254 7 C -0.033 4.033 8 C -0.160 4.160 9 C 0.028 3.972 10 C -0.549 4.549 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.160 4.160 19 C -0.021 4.021 20 C -0.176 4.176 21 C -0.186 4.186 22 C -0.167 4.167 23 H 0.115 0.885 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.236 0.764 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.133 0.867 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.097 -14.924 0.208 14.926 hybrid contribution 0.439 1.403 -1.795 2.320 sum 0.536 -13.521 -1.587 13.624 Atomic orbital electron populations 1.22206 0.92935 1.01290 1.05234 1.21285 0.93864 0.79377 0.98038 1.44794 1.54303 1.14202 1.17694 1.22060 0.83752 0.82944 0.90030 1.93029 1.59519 1.79984 1.22466 1.47592 1.48725 1.06811 1.22322 1.22430 0.95768 0.98505 0.86647 1.22144 0.99736 0.91777 1.02339 1.18679 0.95160 0.92856 0.90503 1.21227 1.06415 1.07921 1.19375 0.92413 1.24968 0.94803 0.97666 0.96525 1.69822 1.15553 1.39520 1.28375 0.86529 0.79512 0.83194 0.78775 1.19705 1.20941 1.21048 1.22022 0.99685 0.94313 0.99985 1.22399 1.01955 0.89604 0.88135 1.23305 0.98735 0.99009 0.96552 1.22953 0.97323 1.01352 0.96976 1.23307 0.97249 0.98332 0.97853 0.88486 0.92017 0.93094 0.76408 0.90403 0.92225 0.93931 0.87267 0.95255 0.92937 0.92652 0.91290 0.86708 0.91227 0.88363 0.91363 0.90660 0.91286 0.88888 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.96 37.16 0.33 -1.62 16 2 C 0.16 1.89 0.97 -131.01 -0.13 1.77 16 3 N -0.68 -8.99 5.07 -48.55 -0.25 -9.24 16 4 C 0.57 9.40 7.36 -86.92 -0.64 8.76 16 5 S -0.68 -12.71 23.06 -107.50 -2.48 -15.19 16 6 N -0.55 -9.18 2.97 -174.52 -0.52 -9.70 16 7 C 0.09 1.48 6.46 -3.49 -0.02 1.46 16 8 C -0.12 -2.49 5.17 -26.39 -0.14 -2.62 16 9 C 0.05 1.05 2.06 -91.73 -0.19 0.86 16 10 C -0.51 -13.10 8.56 -34.44 -0.29 -13.40 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 13 N -0.89 -23.58 11.31 55.43 0.63 -22.95 16 14 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.12 -2.37 5.30 -26.62 -0.14 -2.51 16 19 C 0.10 1.77 6.30 -3.71 -0.02 1.75 16 20 C -0.14 -1.23 7.36 -25.92 -0.19 -1.42 16 21 C -0.15 -1.40 7.99 -25.92 -0.21 -1.61 16 22 C -0.13 -1.50 6.48 -25.92 -0.17 -1.67 16 23 H 0.10 1.46 6.15 -51.93 -0.32 1.14 16 24 H 0.06 0.62 7.84 -51.93 -0.41 0.21 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.40 4.67 6.12 -40.82 -0.25 4.42 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 0.81 5.56 -51.93 -0.29 0.52 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.11 2.51 6.03 -51.93 -0.31 2.20 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.12 2.08 6.00 -50.54 -0.30 1.77 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.10 0.74 7.90 -51.93 -0.41 0.33 16 38 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 1.36 6.50 -51.92 -0.34 1.02 16 42 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 329.16 15.07 4.96 4.96 Total: -1.00 -27.82 329.16 -11.39 -39.22 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.82 Total: 6.39 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.90 Total: -8.78 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.14 Total: -41.88 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: -12.71 SS G_CDS: -2.48 Total: -15.19 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.82 -11.39 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840741940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.794 kcal (2) G-P(sol) polarization free energy of solvation -27.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds