Wall clock time and date at job start Tue Mar 31 2020 07:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46951 * 89.97785 * 9 8 7 11 11 C 1.34772 * 119.99900 * 180.02562 * 10 9 8 12 12 O 1.21590 * 120.00332 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00183 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00160 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.46747 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00459 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99258 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00350 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99530 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47432 * 90.00237 * 19 17 15 21 21 H 1.48506 * 109.46838 * 210.00012 * 19 17 15 22 22 H 1.48498 * 109.46964 * 329.99572 * 19 17 15 23 23 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 33 33 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 34 34 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 35 35 H 0.97004 * 120.00025 * 0.02562 * 10 9 8 36 36 H 0.96998 * 119.99426 * 0.02562 * 13 11 10 37 37 H 1.09004 * 109.46601 * 300.00389 * 14 13 11 38 38 H 1.08995 * 109.46627 * 59.99906 * 14 13 11 39 39 H 0.97007 * 119.99804 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 7 4.9431 -0.8912 -4.3106 11 6 6.0332 -1.0537 -5.0862 12 8 6.6835 -2.0785 -5.0140 13 7 6.4019 -0.0807 -5.9428 14 6 7.5872 -0.2571 -6.7856 15 6 7.7791 0.9660 -7.6449 16 1 7.0876 1.7922 -7.5704 17 6 8.8381 1.0305 -8.5254 18 7 9.6810 0.0250 -8.6150 19 14 9.0764 2.5468 -9.5901 20 1 9.9345 3.5246 -8.8741 21 1 9.7281 2.1579 -10.8666 22 1 7.7560 3.1632 -9.8762 23 7 3.2573 -0.8636 -1.5060 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -0.2075 2.1393 33 1 5.3468 -2.1309 -2.6676 34 1 4.3358 -2.8636 -3.9362 35 1 4.4241 -0.0738 -4.3685 36 1 5.8829 0.7367 -6.0007 37 1 8.4643 -0.3983 -6.1540 38 1 7.4533 -1.1316 -7.4222 39 1 10.4258 0.0703 -9.2349 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847362070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:20 Heat of formation + Delta-G solvation = 90.173571 kcal Electronic energy + Delta-G solvation = -21487.728114 eV Core-core repulsion = 18082.723531 eV Total energy + Delta-G solvation = -3405.004582 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.155 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.56670 -39.19320 -38.06616 -35.05574 -34.00839 -33.60147 -32.48853 -31.98347 -28.42938 -28.11698 -27.75075 -26.30163 -24.78518 -22.77369 -21.98727 -20.91861 -20.21437 -18.24975 -17.47774 -17.32959 -16.28350 -15.69155 -15.08542 -14.85306 -14.75621 -14.56224 -14.38895 -13.95675 -13.58617 -13.35928 -13.05658 -13.01547 -12.87110 -12.84938 -12.41609 -12.15361 -12.04714 -11.92687 -11.72970 -11.58247 -11.08126 -11.06098 -10.93256 -10.85645 -10.47666 -10.27373 -9.41093 -9.33629 -8.82570 -8.67019 -7.74041 -6.12116 -4.18410 1.03781 1.57039 1.86737 3.27222 3.32046 3.34749 3.39990 3.61935 3.89162 3.95493 3.96667 4.07117 4.36126 4.38866 4.83744 4.86581 4.90486 5.03198 5.06484 5.09260 5.09513 5.24010 5.30020 5.38280 5.47547 5.52114 5.66487 5.69937 5.76546 6.01347 6.71424 7.11142 7.53708 7.57270 7.61243 7.91757 8.06444 8.20609 8.79123 8.94806 9.33892 9.50344 10.98138 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.030209 B = 0.002786 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.651631 B =10046.720733 C =10490.092756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 C -0.160 4.160 4 C -0.159 4.159 5 N -0.131 5.131 6 N -0.064 5.064 7 N -0.271 5.271 8 C 0.153 3.847 9 C 0.244 3.756 10 N -0.753 5.753 11 C 0.698 3.302 12 O -0.597 6.597 13 N -0.727 5.727 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 N -0.288 5.288 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.393 0.607 36 H 0.387 0.613 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.172 2.403 21.079 28.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.097 3.903 3 C -0.218 4.218 4 C -0.217 4.217 5 N -0.045 5.045 6 N -0.056 5.056 7 N -0.142 5.142 8 C -0.129 4.129 9 C 0.116 3.884 10 N -0.412 5.412 11 C 0.398 3.602 12 O -0.476 6.476 13 N -0.379 5.379 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 N -0.139 5.139 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.225 0.775 36 H 0.219 0.781 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.001 1.454 21.155 28.473 hybrid contribution 0.164 1.516 -0.729 1.690 sum -18.837 2.971 20.427 27.945 Atomic orbital electron populations 1.22093 0.90060 1.04609 1.04324 1.21411 0.96442 0.92815 0.79604 1.22244 1.03499 0.91976 1.04089 1.22240 1.03447 1.01036 0.95014 1.50571 1.01206 1.34720 1.18034 1.78956 1.21989 1.09074 0.95617 1.75923 1.00831 1.18180 1.19306 1.25679 0.95720 0.99462 0.92077 1.19068 0.87731 0.90955 0.90654 1.45003 1.31061 1.21009 1.44105 1.16007 0.80228 0.84564 0.79404 1.90888 1.55820 1.28820 1.72098 1.45705 1.32437 1.18236 1.41509 1.19006 0.80894 0.97213 0.88313 1.21228 1.12113 1.02310 1.22340 0.91974 1.24940 0.95455 0.96693 0.96934 1.69979 1.14911 1.30676 1.36709 0.86417 0.78356 0.82439 0.79684 1.20518 1.21013 1.19795 1.74661 1.03132 1.19115 1.17031 0.90557 0.89249 0.90597 0.89155 0.90240 0.91312 0.91393 0.90283 0.89148 0.88891 0.88497 0.77460 0.78134 0.95631 0.95581 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 7.91 37.16 0.29 -0.42 16 2 C 0.18 1.14 1.30 -131.82 -0.17 0.97 16 3 C -0.16 -0.85 8.66 37.15 0.32 -0.53 16 4 C -0.16 -0.79 8.67 37.16 0.32 -0.47 16 5 N -0.13 -1.39 3.73 0.48 0.00 -1.39 16 6 N -0.06 -0.80 12.24 60.35 0.74 -0.06 16 7 N -0.27 -3.86 12.50 32.45 0.41 -3.46 16 8 C 0.15 2.07 7.74 -156.62 -1.21 0.85 16 9 C 0.24 3.48 6.30 -5.19 -0.03 3.44 16 10 N -0.75 -12.02 5.55 -66.41 -0.37 -12.39 16 11 C 0.70 14.70 8.57 -86.92 -0.74 13.95 16 12 O -0.60 -14.95 16.34 5.29 0.09 -14.87 16 13 N -0.73 -15.90 5.55 -66.41 -0.37 -16.27 16 14 C 0.27 7.23 5.43 -5.19 -0.03 7.20 16 15 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 19 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 N -0.29 -3.55 11.83 32.47 0.38 -3.16 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.39 5.46 8.48 -40.82 -0.35 5.11 16 36 H 0.39 7.30 8.34 -40.82 -0.34 6.96 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -34.61 339.75 -5.67 -40.28 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.72 Total: 4.30 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -1.67 Total: 11.45 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 1.53 Total: -62.36 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.09 Total: -14.87 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.61 -5.67 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847362070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.456 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds