Wall clock time and date at job start Tue Mar 31 2020 05:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 O 1.45202 * 109.46800 * 89.97686 * 9 8 7 11 11 C 1.34228 * 116.99649 * 179.97438 * 10 9 8 12 12 O 1.20825 * 119.99950 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00003 * 179.97438 * 11 10 9 14 14 C 1.52996 * 109.47362 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47588 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00563 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99659 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47082 * 59.99782 * 19 17 15 21 21 H 1.48502 * 109.47162 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47349 * 299.99675 * 19 17 15 23 23 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 33 33 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 34 34 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 35 35 H 1.08995 * 109.47251 * 300.00665 * 13 11 10 36 36 H 1.09006 * 109.46737 * 60.00195 * 13 11 10 37 37 H 1.09004 * 109.47292 * 300.00729 * 14 13 11 38 38 H 1.09006 * 109.47081 * 60.00349 * 14 13 11 39 39 H 0.97000 * 119.99577 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 8 4.9395 -0.9006 -4.3023 11 6 6.0349 -1.1253 -5.0448 12 8 6.6412 -2.1639 -4.9282 13 6 6.5078 -0.0826 -6.0248 14 6 7.7654 -0.5850 -6.7367 15 6 8.2388 0.4579 -7.7162 16 1 7.6970 1.3864 -7.8202 17 6 9.3634 0.2268 -8.4796 18 7 10.0234 -0.9037 -8.3526 19 14 9.9496 1.5192 -9.6942 20 1 10.2614 2.7761 -8.9675 21 1 11.1696 1.0312 -10.3860 22 1 8.8835 1.7776 -10.6952 23 7 3.2573 -0.8636 -1.5060 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2492 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -0.2075 2.1393 33 1 5.3468 -2.1309 -2.6676 34 1 4.3358 -2.8636 -3.9362 35 1 5.7256 0.1065 -6.7598 36 1 6.7360 0.8403 -5.4914 37 1 8.5479 -0.7745 -6.0018 38 1 7.5369 -1.5077 -7.2701 39 1 10.8148 -1.0661 -8.8894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848005420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:42 Heat of formation + Delta-G solvation = 26.767673 kcal Electronic energy + Delta-G solvation = -21416.494098 eV Core-core repulsion = 17976.447279 eV Total energy + Delta-G solvation = -3440.046820 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.56695 -40.00449 -38.07015 -36.29871 -33.67090 -33.58369 -32.97799 -31.15423 -28.67794 -28.10462 -27.76458 -25.82659 -24.80229 -22.71273 -21.88410 -20.92861 -19.87500 -17.65326 -17.45070 -17.17116 -16.42135 -16.20505 -15.79062 -14.79015 -14.70296 -14.47290 -14.40248 -13.89346 -13.70728 -13.31171 -13.07493 -12.90231 -12.53445 -12.40414 -12.32867 -12.25369 -12.11755 -12.00398 -11.62919 -11.21094 -11.09865 -11.07826 -10.93468 -10.66584 -10.51387 -10.48811 -10.03747 -9.93794 -9.55825 -9.18511 -8.36452 -6.00516 -4.05414 1.02588 1.54457 1.78536 2.77884 3.12029 3.33978 3.38540 3.40644 3.62028 3.93894 3.97740 4.07960 4.31746 4.45666 4.84183 4.87326 4.91702 5.03701 5.06434 5.09034 5.10458 5.31803 5.34871 5.35755 5.39256 5.52323 5.55713 5.60159 5.71298 6.00539 6.12103 6.19319 6.58052 6.88057 7.66944 7.74036 7.98744 8.19001 8.22015 8.38425 9.01305 9.58517 11.10469 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.035774 B = 0.002651 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.503152 B =10560.334149 C =10861.216375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 C -0.160 4.160 4 C -0.159 4.159 5 N -0.130 5.130 6 N -0.062 5.062 7 N -0.268 5.268 8 C 0.167 3.833 9 C 0.165 3.835 10 O -0.362 6.362 11 C 0.462 3.538 12 O -0.501 6.501 13 C -0.101 4.101 14 C 0.033 3.967 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 N -0.284 5.284 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.285 2.684 21.027 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.097 3.903 3 C -0.218 4.218 4 C -0.217 4.217 5 N -0.044 5.044 6 N -0.054 5.054 7 N -0.140 5.140 8 C -0.115 4.115 9 C 0.088 3.912 10 O -0.279 6.279 11 C 0.306 3.694 12 O -0.387 6.387 13 C -0.139 4.139 14 C -0.004 4.004 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.136 5.136 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.590 2.327 21.144 28.918 hybrid contribution 0.862 0.468 -0.695 1.202 sum -18.728 2.794 20.449 27.869 Atomic orbital electron populations 1.22096 0.89998 1.04622 1.04377 1.21435 0.96494 0.92864 0.79511 1.22250 1.03531 0.91934 1.04133 1.22243 1.03434 1.01036 0.95025 1.50557 1.01102 1.34669 1.18070 1.78941 1.21870 1.09001 0.95616 1.75878 1.00701 1.18300 1.19084 1.25042 0.95020 0.99661 0.91805 1.20655 0.89347 0.90030 0.91206 1.86598 1.45728 1.45310 1.50214 1.24835 0.76281 0.89043 0.79276 1.90652 1.55030 1.27736 1.65271 1.21800 1.01886 0.95455 0.94760 1.19032 0.89381 0.96985 0.95009 1.21112 1.11148 1.02700 1.21780 0.92359 1.25015 0.96527 0.95564 0.97195 1.69982 1.18504 1.23776 1.40506 0.86597 0.78140 0.81663 0.81227 1.20181 1.21254 1.20156 1.74609 1.03270 1.18463 1.17262 0.90507 0.89198 0.90587 0.89116 0.90228 0.91229 0.91389 0.90301 0.89086 0.88306 0.87897 0.88769 0.88854 0.95494 0.95447 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 7.91 37.16 0.29 -0.45 16 2 C 0.18 1.21 1.30 -131.82 -0.17 1.03 16 3 C -0.16 -0.92 8.66 37.15 0.32 -0.60 16 4 C -0.16 -0.81 8.67 37.16 0.32 -0.49 16 5 N -0.13 -1.47 3.73 0.48 0.00 -1.47 16 6 N -0.06 -0.82 12.24 60.35 0.74 -0.08 16 7 N -0.27 -4.08 12.50 32.45 0.41 -3.68 16 8 C 0.17 2.45 8.01 -156.62 -1.25 1.19 16 9 C 0.16 2.43 6.09 36.01 0.22 2.65 16 10 O -0.36 -6.29 10.20 -39.25 -0.40 -6.69 16 11 C 0.46 9.17 7.96 36.01 0.29 9.45 16 12 O -0.50 -11.24 15.73 -18.75 -0.29 -11.53 16 13 C -0.10 -2.09 5.75 -27.89 -0.16 -2.25 16 14 C 0.03 0.87 4.26 -27.89 -0.12 0.75 16 15 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 19 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 N -0.28 -3.78 11.83 32.47 0.38 -3.39 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 34 H 0.10 1.43 8.13 -51.93 -0.42 1.01 16 35 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 36 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 37 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -34.27 341.62 -4.85 -39.12 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -5.88 Total: -5.38 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.67 Total: -2.26 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 2.27 Total: -34.92 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.70 Total: -18.22 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.27 -4.85 -39.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848005420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.888 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds